Rmu_sc0031852.1_g000001

HEAT-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031852.1
OG0003507
Physical Location & Seq
Reverse (-)
2 .. 1510
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031852.1_g000001.1.cds

Sequence Viewer

Length: 1509 bp
atggagatcactcagtatctattgtcagctcaatcagccgatgcaagagttcgtactgaagcagaatctaatctgaggaaatttcaagagcaaaacctacctgctttccttctgttgttgtcggttgagctagcaaacaatgaaaagccagttgaatcccgaaggttagctggtattgttcttaagaacttactagatgccaaagattctattacgaagaaacatcttgctcagcaatggatggatattgatattgcatttaaatcccaaatcaagagctgcctcttacagacacttgggtcatctgtggcagaggcaaggcacacctctgcccaagttcttgccaaagttgcttctattgatgttccccggaaacagtggcctgagctaattggacatttgcttaataacatgattcagcgcgatagctctgccggtttgaaacagtcaaccttggaaactcttggttatgtatgtgaggaaatatcccatcctgatcttcagcaagacaaggtaaactctgttcttacagctgtaattcaaggaatgaatcttgagaacagttctgaagtccgtcttgctgcaacaagggcattatgtaatgccttggagtttgctcagacaaactttgaaaatgagatggaacgaacttacatcatgaagatgatctgtgagactgccttatctaaggaggtagaggttaggcaggctgcttttgagtgccttgcctcaattgcttctacatactattctgtgcttgggacttacatgcaggctctctttgagcttacatcaaatgcggtaaaaggggatgtagaacctgttgcccttcaagcaattgagttctggagttccatttgtgaaaaagaaacagaattgcaaaagtatgagacagctgacaggaactgttgggactctttaccggactttgtgcctcctcattcacgttttatagaaaaatctcgaatttctctaattccaatagtgctagagactttgctaatgcaggaagaaaatgtaagccaggatgacaacatttggaatatctcaatggctgggaagaaatgcctagaacttgttgcccaaactgttgggtttgtcattgtaccgcttgtgattccatttgtggtggctaacagagtgaaaccagattggcattgtcgggaggcagcagtttttgcacttggtgcaattattgaaggctcaaccatctaccaggatcttggggtcttattaaaatactgtgaactggtccgtgaacttatagatgacttgcttttcttaatgaatgatgaaaacaaccaagtcaaagaaactactgcatggactctcggtcgtatatttgaatttttgcatagtcctgttggtggattttctgtgattacttccgataatcttccaatagtggtagatatattggtgaagagcgttagtgatgctccaaatgttgcaactaaggtgtgtcgggcgatttatacacttgctgagggctatgaggaagctggaatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

503

Amino Acids

56.18

Weight (kDa)

4.86

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 109
AccII CGCG 1 cut(s) 423
AciI CCGC 2 cut(s) 800, 1109
AclWI GGATC 1 cut(s) 1227
AcsI RAATTY 3 cut(s) 80, 966, 1346
AcuI CTGAAG 3 cut(s) 78, 485, 588
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 2 cut(s) 55, 1107
AfiI CCNNNNNNNGG 1 cut(s) 1367
AflII CTTAAG 1 cut(s) 182
AgsI TTSAA 8 cut(s) 86, 155, 442, 542, 632, 833, 1199, 1346
AhdI GACNNNNNGTC 1 cut(s) 1332
AjnI CCWGG 2 cut(s) 1023, 1215
Alw26I GTCTC 3 cut(s) 668, 884, 986
AlwI GGATC 1 cut(s) 1227
AlwNI CAGNNNCTG 1 cut(s) 906
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 4 cut(s) 279, 581, 710, 1169
ApoI RAATTY 3 cut(s) 80, 966, 1346
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 1252
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 1 cut(s) 1432
AsuNHI GCTAGC 1 cut(s) 130
AvaII GGWCC 1 cut(s) 1252
BbvCI CCTCAGC 1 cut(s) 1485
BbvI GCAGC 4 cut(s) 266, 568, 697, 1181
BccI CCATC 4 cut(s) 235, 498, 634, 1217
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 2 cut(s) 1025, 1217
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 3 cut(s) 668, 884, 986
BfaI CTAG 4 cut(s) 131, 194, 989, 1070
BfrI CTTAAG 1 cut(s) 182
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 4 cut(s) 280, 582, 711, 1170
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 4 cut(s) 281, 583, 712, 1171
Bme1390I CCNGG 3 cut(s) 370, 1025, 1217
Bme18I GGWCC 1 cut(s) 1252
BmeRI GACNNNNNGTC 1 cut(s) 1332
BmgT120I GGNCC 1 cut(s) 1252
BmrFI CCNGG 3 cut(s) 370, 1025, 1217
BmsI GCATC 3 cut(s) 31, 187, 1426
BmtI GCTAGC 1 cut(s) 134
BpmI CTGGAG 1 cut(s) 868
Bpu10I CCTNAGC 2 cut(s) 384, 1485
Bpu1102I GCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 575
BpuMI CCSGG 1 cut(s) 370
BsaJI CCNNGG 3 cut(s) 368, 453, 606
BsaWI WCCGGW 1 cut(s) 922
Bsc4I CCNNNNNNNGG 1 cut(s) 1367
Bse118I RCCGGY 1 cut(s) 434
Bse1I ACTGG 2 cut(s) 149, 1254
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 2 cut(s) 1025, 1217
BseDI CCNNGG 3 cut(s) 368, 453, 606
BseGI GGATG 4 cut(s) 246, 490, 817, 1033
BseLI CCNNNNNNNGG 1 cut(s) 1367
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 6 cut(s) 26, 65, 245, 375, 632, 1476
BseNI ACTGG 2 cut(s) 149, 1254
BseRI GAGGAG 1 cut(s) 927
BseXI GCAGC 4 cut(s) 266, 568, 697, 1181
BseYI CCCAGC 1 cut(s) 1055
Bsh1236I CGCG 1 cut(s) 423
Bsh1285I CGRYCG 1 cut(s) 1336
BshFI GGCC 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 1336
BsiSI CCGG 3 cut(s) 370, 435, 923
BslFI GGGAC 2 cut(s) 775, 926
BslI CCNNNNNNNGG 1 cut(s) 1367
BsmAI GTCTC 3 cut(s) 668, 884, 986
BsmFI GGGAC 2 cut(s) 775, 926
BsnI GGCC 1 cut(s) 382
Bsp143I GATC 4 cut(s) 6, 496, 666, 1219
Bsp1720I GCTNAGC 1 cut(s) 231
BspACI CCGC 2 cut(s) 800, 1109
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 6 cut(s) 25, 66, 244, 376, 631, 1477
BspFNI CGCG 1 cut(s) 423
BspHI TCATGA 1 cut(s) 657
BspMI ACCTGC 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 134
BspPI GGATC 1 cut(s) 1227
BspQI GCTCTTC 1 cut(s) 1418
BspTI CTTAAG 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 434
BsrI ACTGG 2 cut(s) 149, 1254
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 3 cut(s) 368, 453, 606
BssMI GATC 4 cut(s) 6, 496, 666, 1219
BssT1I CCWWGG 2 cut(s) 453, 606
Bst2UI CCWGG 2 cut(s) 1025, 1217
Bst4CI ACNGT 6 cut(s) 378, 447, 563, 908, 1090, 1244
Bst6I CTCTTC 1 cut(s) 1418
BstAFI CTTAAG 1 cut(s) 182
BstAPI GCANNNNNTGC 2 cut(s) 1178, 1187
BstC8I GCNNGC 3 cut(s) 132, 708, 774
BstDEI CTNAG 8 cut(s) 12, 74, 231, 384, 618, 687, 1455, 1485
BstF5I GGATG 4 cut(s) 246, 490, 817, 1033
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 4 cut(s) 9, 499, 669, 1222
BstMAI GTCTC 3 cut(s) 668, 884, 986
BstMBI GATC 4 cut(s) 6, 496, 666, 1219
BstMCI CGRYCG 1 cut(s) 1336
BstMWI GCNNNNNNNGC 7 cut(s) 35, 350, 590, 734, 833, 1178, 1187
BstNI CCWGG 2 cut(s) 1025, 1217
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 3 cut(s) 368, 1023, 1215
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 4 cut(s) 266, 568, 697, 1181
BstX2I RGATCY 1 cut(s) 1219
BstXI CCANNNNNNTGG 2 cut(s) 1091, 1223
BstYI RGATCY 1 cut(s) 1219
BsuRI GGCC 1 cut(s) 382
BtsCI GGATG 4 cut(s) 246, 490, 817, 1033
BtsIMutI CAGTG 1 cut(s) 383
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 3 cut(s) 132, 708, 774
CaiI CAGNNNCTG 1 cut(s) 906
CciI TCATGA 1 cut(s) 657
CfoI GCGC 1 cut(s) 423
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 1252
Csp6I GTAC 2 cut(s) 54, 1106
CviAII CATG 4 cut(s) 412, 658, 769, 1323
CviQI GTAC 2 cut(s) 54, 1106
DdeI CTNAG 8 cut(s) 12, 74, 231, 384, 618, 687, 1455, 1485
DpnI GATC 4 cut(s) 8, 498, 668, 1221
DpnII GATC 4 cut(s) 6, 496, 666, 1219
DraI TTTAAA 1 cut(s) 262
DraIII CACNNNGTG 1 cut(s) 1187
DrdI GACNNNNNNGTC 1 cut(s) 298
DriI GACNNNNNGTC 1 cut(s) 1332
DseDI GACNNNNNNGTC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 1418
Eam1105I GACNNNNNGTC 1 cut(s) 1332
EarI CTCTTC 1 cut(s) 1418
Eco130I CCWWGG 2 cut(s) 453, 606
Eco47I GGWCC 1 cut(s) 1252
Eco57I CTGAAG 3 cut(s) 78, 485, 588
EcoRII CCWGG 2 cut(s) 1023, 1215
EcoT14I CCWWGG 2 cut(s) 453, 606
ErhI CCWWGG 2 cut(s) 453, 606
FaeI CATG 4 cut(s) 415, 661, 772, 1326
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 2 cut(s) 775, 926
FatI CATG 4 cut(s) 411, 657, 768, 1322
Fnu4HI GCNGC 4 cut(s) 280, 582, 711, 1170
FokI GGATG 4 cut(s) 253, 477, 824, 1040
Fsp4HI GCNGC 4 cut(s) 280, 582, 711, 1170
FspBI CTAG 4 cut(s) 131, 194, 989, 1070
GlaI GCGC 1 cut(s) 422
GluI GCNGC 4 cut(s) 280, 582, 711, 1170
GsaI CCCAGC 1 cut(s) 1059
GsuI CTGGAG 1 cut(s) 868
HaeIII GGCC 1 cut(s) 382
HapII CCGG 3 cut(s) 370, 435, 923
HhaI GCGC 1 cut(s) 423
Hin1II CATG 4 cut(s) 415, 661, 772, 1326
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HinfI GANTC 8 cut(s) 65, 155, 206, 415, 550, 914, 1117, 1327
HpaII CCGG 3 cut(s) 370, 435, 923
HphI GGTGA 1 cut(s) 1432
Hpy166II GTNNAC 4 cut(s) 450, 517, 1247, 1259
Hpy188I TCNGA 4 cut(s) 75, 568, 621, 1390
Hpy188III TCNNGA 9 cut(s) 86, 159, 274, 494, 554, 658, 847, 963, 1163
Hpy8I GTNNAC 4 cut(s) 450, 517, 1247, 1259
HpyAV CCTTC 4 cut(s) 119, 156, 839, 1193
HpyCH4III ACNGT 6 cut(s) 378, 447, 563, 908, 1090, 1244
HpyCH4IV ACGT 1 cut(s) 946
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 350, 590, 734, 833, 1178, 1187
HpyF3I CTNAG 8 cut(s) 12, 74, 231, 384, 618, 687, 1455, 1485
HpySE526I ACGT 1 cut(s) 946
Hsp92II CATG 4 cut(s) 415, 661, 772, 1326
HspAI GCGC 1 cut(s) 421
Kzo9I GATC 4 cut(s) 6, 496, 666, 1219
LguI GCTCTTC 1 cut(s) 1418
LmnI GCTCC 1 cut(s) 1444
Lsp1109I GCAGC 4 cut(s) 266, 568, 697, 1181
LweI GCATC 3 cut(s) 31, 187, 1426
MaeI CTAG 4 cut(s) 131, 194, 989, 1070
MaeII ACGT 1 cut(s) 946
MalI GATC 4 cut(s) 8, 498, 668, 1221
MboI GATC 4 cut(s) 6, 496, 666, 1219
MboII GAAGA 7 cut(s) 229, 491, 673, 1022, 1072, 1388, 1435
MfeI CAATTG 2 cut(s) 732, 837
MflI RGATCY 1 cut(s) 1219
MlyI GAGTC 2 cut(s) 908, 1321
MseI TTAA 5 cut(s) 183, 261, 405, 1235, 1283
MslI CAYNNNNRTG 1 cut(s) 662
MspA1I CMGCKG 2 cut(s) 533, 896
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 3 cut(s) 370, 435, 923
MspR9I CCNGG 3 cut(s) 370, 1025, 1217
MunI CAATTG 2 cut(s) 732, 837
MvaI CCWGG 2 cut(s) 1025, 1217
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 7 cut(s) 35, 350, 590, 734, 833, 1178, 1187
NciI CCSGG 1 cut(s) 370
NdeII GATC 4 cut(s) 6, 496, 666, 1219
NheI GCTAGC 1 cut(s) 130
NlaIII CATG 4 cut(s) 415, 661, 772, 1326
NspI RCATGY 1 cut(s) 772
PagI TCATGA 1 cut(s) 657
PciSI GCTCTTC 1 cut(s) 1418
PfeI GAWTC 6 cut(s) 65, 155, 206, 415, 550, 1117
PkrI GCNGC 4 cut(s) 281, 583, 712, 1171
PleI GAGTC 2 cut(s) 908, 1321
PpsI GAGTC 2 cut(s) 908, 1321
Psp6I CCWGG 2 cut(s) 1023, 1215
PspFI CCCAGC 1 cut(s) 1055
PspGI CCWGG 2 cut(s) 1023, 1215
PspPI GGNCC 1 cut(s) 1252
PsrI GAACNNNNNNTAC 2 cut(s) 507, 539
PstNI CAGNNNCTG 1 cut(s) 906
PsuI RGATCY 1 cut(s) 1219
PvuII CAGCTG 2 cut(s) 533, 896
RsaI GTAC 2 cut(s) 55, 1107
RsaNI GTAC 2 cut(s) 54, 1106
RseI CAYNNNNRTG 1 cut(s) 662
SapI GCTCTTC 1 cut(s) 1418
SaqAI TTAA 5 cut(s) 183, 261, 405, 1235, 1283
SatI GCNGC 4 cut(s) 280, 582, 711, 1170
Sau3AI GATC 4 cut(s) 6, 496, 666, 1219
Sau96I GGNCC 1 cut(s) 1252
SchI GAGTC 2 cut(s) 908, 1321
ScrFI CCNGG 3 cut(s) 370, 1025, 1217
SfaNI GCATC 3 cut(s) 31, 187, 1426
SinI GGWCC 1 cut(s) 1252
SmiI ATTTAAAT 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 182, 554
SmoI CTYRAG 2 cut(s) 182, 554
SsiI CCGC 2 cut(s) 800, 1109
SspMI CTAG 4 cut(s) 131, 194, 989, 1070
StyD4I CCNGG 3 cut(s) 368, 1023, 1215
StyI CCWWGG 2 cut(s) 453, 606
SwaI ATTTAAAT 1 cut(s) 262
TaaI ACNGT 6 cut(s) 378, 447, 563, 908, 1090, 1244
TaiI ACGT 1 cut(s) 949
TaqI TCGA 1 cut(s) 964
TaqII GACCGA 1 cut(s) 1322
TfiI GAWTC 6 cut(s) 65, 155, 206, 415, 550, 1117
Tru1I TTAA 5 cut(s) 183, 261, 405, 1235, 1283
Tru9I TTAA 5 cut(s) 183, 261, 405, 1235, 1283
TscAI CASTG 1 cut(s) 383
TseI GCWGC 4 cut(s) 279, 581, 710, 1169
TspDTI ATGAA 5 cut(s) 156, 563, 674, 1301, 1308
TspGWI ACGGA 2 cut(s) 563, 1244
TspRI CASTG 1 cut(s) 383
Vha464I CTTAAG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 1252
XapI RAATTY 3 cut(s) 80, 966, 1346
XceI RCATGY 1 cut(s) 772
XspI CTAG 4 cut(s) 131, 194, 989, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.