pycom04g14590

HEAT-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0003507
Physical Location & Seq
Forward (+)
17453700 .. 17454398
699 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g14590.1

Sequence Viewer

Length: 699 bp
ATGGCTATTGATATTTCTATTATATCCCAAATCAAGGACTTGCTCTTAAGGACACTTGGGTCACCTGTCCTGGAGGCAAGACACACATCTGCCCAAGTTATTGCAAAAGTTGCTTCTATTGATATTCCCAGAAAACAATGGCCTGACCTTATTGGGTCTTTGCTCAACAATATGACTCAGCGAGATAACCCAGCTGGTTTGAAGCAGTCAACTTTGGAAGCACTTGGTTATGTATGTGAGGAGATATCTCATCAAGATCTTGAGCAAGGTGAGGTGAACAATGTTCTTACTGCTGTGGTCCAAGGAATGAACCTTGCTGAAAATAGCCCAGAAGTTCGTCTGGCTGCAACACGGGCTTTATATAATGCCCTGGAGTTTGCACAAACCAACTTTGACACTCAGATGGAACGAGATTTCATTATGAAGATGGTCTGCGAGACGGCTTTGTCTAAGGAGGTACAAATTAGGCAGGCTGCTTTTGAGTGTCTTGCTTCAATTGCTTCCAGATATTACGAGGTGCTTGAGCCTTACATGCAGGCTCTCTTTGAGCTTACATCAAATGCTATAAAAGGGGATGAAGAGGGGGTTGCCCTTCAAGCAATTGAGTTTTGGAGCTCCATTTGTGATGAAGAAATAGAGCTTCAAGAATTTGATCGATCTCTGACACTGGGGACTCGGGGCCTCATTCAAAATTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

233

Amino Acids

25.89

Weight (kDa)

4.49

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_IPO5 PF25780 26 - 184 3.7e-11 IPO5-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 58, 445
AcsI RAATTY 2 cut(s) 647, 691
AfaI GTAC 1 cut(s) 459
AfiI CCNNNNNNNGG 1 cut(s) 34
AflII CTTAAG 1 cut(s) 46
AgsI TTSAA 5 cut(s) 202, 495, 596, 644, 689
AjnI CCWGG 2 cut(s) 69, 369
AluBI AGCT 4 cut(s) 194, 550, 615, 640
AluI AGCT 4 cut(s) 194, 550, 615, 640
Alw21I GWGCWC 1 cut(s) 617
Alw26I GTCTC 1 cut(s) 431
Ama87I CYCGRG 1 cut(s) 675
AoxI GGCC 2 cut(s) 140, 679
ApeKI GCWGC 2 cut(s) 344, 473
ApoI RAATTY 2 cut(s) 647, 691
AspS9I GGNCC 2 cut(s) 298, 679
AsuHPI GGTGA 3 cut(s) 54, 281, 286
AvaI CYCGRG 1 cut(s) 675
AvaII GGWCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 617
BbvI GCAGC 2 cut(s) 331, 460
BccI CCATC 2 cut(s) 397, 421
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 2 cut(s) 71, 371
BcoDI GTCTC 1 cut(s) 431
BfrI CTTAAG 1 cut(s) 46
BglII AGATCT 1 cut(s) 256
BisI GCNGC 2 cut(s) 345, 474
BlsI GCNGC 2 cut(s) 346, 475
Bme1390I CCNGG 2 cut(s) 71, 371
Bme18I GGWCC 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 675
BmgT120I GGNCC 2 cut(s) 298, 679
BmiI GGNNCC 1 cut(s) 680
BmrFI CCNGG 2 cut(s) 71, 371
BmrI ACTGGG 1 cut(s) 677
BmuI ACTGGG 1 cut(s) 677
BpmI CTGGAG 2 cut(s) 92, 392
BpuEI CTTGAG 2 cut(s) 281, 542
Bsa29I ATCGAT 1 cut(s) 655
BsaJI CCNNGG 2 cut(s) 301, 369
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 1 cut(s) 672
BseBI CCWGG 2 cut(s) 71, 371
BseCI ATCGAT 1 cut(s) 655
BseDI CCNNGG 2 cut(s) 301, 369
BseGI GGATG 1 cut(s) 580
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 191, 413
BseNI ACTGG 1 cut(s) 672
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 331, 460
BseYI CCCAGC 1 cut(s) 190
BshFI GGCC 2 cut(s) 142, 681
BshVI ATCGAT 1 cut(s) 655
BsiHKAI GWGCWC 1 cut(s) 617
BsiHKCI CYCGRG 1 cut(s) 675
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 431
BsmBI CGTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 685
BsnI GGCC 2 cut(s) 142, 681
BsoBI CYCGRG 1 cut(s) 675
Bsp1286I GDGCHC 1 cut(s) 617
Bsp143I GATC 3 cut(s) 256, 652, 656
BspANI GGCC 2 cut(s) 142, 681
BspCNI CTCAG 2 cut(s) 190, 412
BspDI ATCGAT 1 cut(s) 655
BspLI GGNNCC 1 cut(s) 680
BspTI CTTAAG 1 cut(s) 46
BsrI ACTGG 1 cut(s) 672
BssECI CCNNGG 2 cut(s) 301, 369
BssMI GATC 3 cut(s) 256, 652, 656
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 2 cut(s) 71, 371
Bst6I CTCTTC 1 cut(s) 573
BstAFI CTTAAG 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 471, 537
BstDEI CTNAG 3 cut(s) 177, 399, 450
BstEII GGTNACC 1 cut(s) 60
BstF5I GGATG 1 cut(s) 580
BstKTI GATC 3 cut(s) 259, 655, 659
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 3 cut(s) 256, 652, 656
BstMWI GCNNNNNNNGC 5 cut(s) 110, 353, 497, 532, 596
BstNI CCWGG 2 cut(s) 71, 371
BstNSI RCATGY 1 cut(s) 535
BstPI GGTNACC 1 cut(s) 60
BstSCI CCNGG 2 cut(s) 69, 369
BstV1I GCAGC 2 cut(s) 331, 460
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
Bsu15I ATCGAT 1 cut(s) 655
BsuRI GGCC 2 cut(s) 142, 681
BsuTUI ATCGAT 1 cut(s) 655
BtsCI GGATG 1 cut(s) 580
BtsIMutI CAGTG 1 cut(s) 665
Cac8I GCNNGC 2 cut(s) 471, 537
Cfr13I GGNCC 2 cut(s) 298, 679
ClaI ATCGAT 1 cut(s) 655
Csp6I GTAC 1 cut(s) 458
CviAII CATG 1 cut(s) 532
CviQI GTAC 1 cut(s) 458
DdeI CTNAG 3 cut(s) 177, 399, 450
DpnI GATC 3 cut(s) 258, 654, 658
DpnII GATC 3 cut(s) 256, 652, 656
DrdI GACNNNNNNGTC 2 cut(s) 58, 445
DseDI GACNNNNNNGTC 2 cut(s) 58, 445
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Ecl136II GAGCTC 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 617
Eco32I GATATC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 298
Eco53kI GAGCTC 1 cut(s) 615
Eco88I CYCGRG 1 cut(s) 675
Eco91I GGTNACC 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 679
EcoO65I GGTNACC 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 69, 369
EcoRV GATATC 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 617
ErhI CCWWGG 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 1 cut(s) 535
FaqI GGGAC 1 cut(s) 685
FatI CATG 1 cut(s) 531
Fnu4HI GCNGC 2 cut(s) 345, 474
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 1 cut(s) 617
Fsp4HI GCNGC 2 cut(s) 345, 474
GluI GCNGC 2 cut(s) 345, 474
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 2 cut(s) 92, 392
HaeIII GGCC 2 cut(s) 142, 681
Hin1II CATG 1 cut(s) 535
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 2 cut(s) 175, 673
HphI GGTGA 3 cut(s) 54, 281, 286
Hpy166II GTNNAC 2 cut(s) 210, 277
Hpy188I TCNGA 2 cut(s) 402, 663
Hpy188III TCNNGA 4 cut(s) 254, 260, 504, 644
Hpy8I GTNNAC 2 cut(s) 210, 277
HpyAV CCTTC 1 cut(s) 602
HpyCH4V TGCA 4 cut(s) 104, 347, 380, 535
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 353, 497, 532, 596
HpyF3I CTNAG 3 cut(s) 177, 399, 450
Hsp92II CATG 1 cut(s) 535
Kzo9I GATC 3 cut(s) 256, 652, 656
LmnI GCTCC 2 cut(s) 612, 620
Lsp1109I GCAGC 2 cut(s) 331, 460
MaeIII GTNAC 1 cut(s) 60
MalI GATC 3 cut(s) 258, 654, 658
MboI GATC 3 cut(s) 256, 652, 656
MboII GAAGA 3 cut(s) 436, 590, 641
MfeI CAATTG 2 cut(s) 495, 600
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 617
MluCI AATT 5 cut(s) 462, 495, 600, 647, 691
MlyI GAGTC 2 cut(s) 169, 667
MnlI CCTC 7 cut(s) 67, 232, 265, 448, 508, 574, 692
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 46
MspR9I CCNGG 2 cut(s) 71, 371
MunI CAATTG 2 cut(s) 495, 600
MvaI CCWGG 2 cut(s) 71, 371
MwoI GCNNNNNNNGC 5 cut(s) 110, 353, 497, 532, 596
NdeII GATC 3 cut(s) 256, 652, 656
NlaIII CATG 1 cut(s) 535
NlaIV GGNNCC 1 cut(s) 680
NmuCI GTSAC 1 cut(s) 60
NspI RCATGY 1 cut(s) 535
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 2 cut(s) 346, 475
PleI GAGTC 2 cut(s) 169, 667
PpsI GAGTC 2 cut(s) 169, 667
Psp124BI GAGCTC 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 69, 369
PspEI GGTNACC 1 cut(s) 60
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 2 cut(s) 69, 369
PspN4I GGNNCC 1 cut(s) 680
PspPI GGNCC 2 cut(s) 298, 679
PsuI RGATCY 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 459
RsaNI GTAC 1 cut(s) 458
RseI CAYNNNNRTG 1 cut(s) 401
SacI GAGCTC 1 cut(s) 617
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 345, 474
Sau3AI GATC 3 cut(s) 256, 652, 656
Sau96I GGNCC 2 cut(s) 298, 679
SchI GAGTC 2 cut(s) 169, 667
ScrFI CCNGG 2 cut(s) 71, 371
SduI GDGCHC 1 cut(s) 617
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 3 cut(s) 46, 260, 521
SmoI CTYRAG 3 cut(s) 46, 260, 521
Sse9I AATT 5 cut(s) 462, 495, 600, 647, 691
SstI GAGCTC 1 cut(s) 617
StyD4I CCNGG 2 cut(s) 69, 369
StyI CCWWGG 1 cut(s) 301
TaqI TCGA 1 cut(s) 655
TasI AATT 5 cut(s) 462, 495, 600, 647, 691
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 672
TseFI GTSAC 1 cut(s) 60
TseI GCWGC 2 cut(s) 344, 473
Tsp45I GTSAC 1 cut(s) 60
TspDTI ATGAA 5 cut(s) 323, 406, 437, 591, 642
TspRI CASTG 1 cut(s) 672
Vha464I CTTAAG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 2 cut(s) 647, 691
XceI RCATGY 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.