Rh3DG118100

HEAT-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003507
Physical Location & Seq
Forward (+)
9940892 .. 9943932
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG118100.1

Sequence Viewer

Length: 2607 bp
ATGGCCATGGAGATCACTCAGTATCTATTGTCAGCTCAATCAGCCGATGCAAGAGTTCGTACTGAAGCAGAATCTAATCTGAGGAAATTTCAAGAGCAAAACCTACCTGCTTTCCTTCTGTTGTTGTCGGTTGAGCTAGCAAACAATGAAAAGCCAGTTGAATCCCGAAGGTTAGCTGGTATTGTTCTTAAGAACTTACTAGATGCCAAAGATTCTATTACGAAGAAACATCTTGCTCAGCAATGGATGGATATTGATATTGCATTTAAATCCCAAATCAAGAGCTGGCTCTTACAGACACTTGGGTCATCTGTGGCAGAGGCAAGGCACACCTCTGCCCAAGTTCTTGCCAAAGTTGCTTCTATTGATGTTCCCCGGAAACAGTGGCCTGAGCTAATTGGACATTTGCTTAATAACATGATTCAGCGCGATAGCTCTGCCGGTTTGAAACAGTCAACCTTGGAAACTCTTGGTTATGTATGTGAGGAAATATCCCATCCTGATCTTCAGCAAGACAAGGTAAACTCTGTTCTTACAGCTGTAATTCAAGGAATGAATCTTGAGAACAGTTCTGAAGTCCGTCTTGCTGCAACAAGGGCATTATGTAATGCCTTGGAGTTTGCTCAGACAAACTTTGAAAATGAGATGGAACGAACTTACATCATGAAGATGATCTGTGAGACTGCCTTATCTAAAGAGGTAGAGGTTAGGCAGGCTGCTTTTGAGTGCCTTGCCTCAATTGCTTCTACATACTATTCTGTGCTTGGGACTTACATGCAGGCTCTCTTTGAGCTTACATCAAATGCGGTAAAAGGGGATGTAGAACCTGTTGCCCTTCAAGCAATTGAGTTCTGGAGTTCCATTTGTGAAAAAGAAACAGAATTGCAAAAGTATGAGACAGCTGACAGGAACTGTTGGGACTCTTTACCGGACTTTGTGCCTCCTCATTCACGTTTTATAGAAAAATCGCGAATTTCTCTAATTCCAATATTGCTAGAGACTTTGCTAATGCAGGAAGAAAATGTAAGCCAGGATGACAACATTTGGAATATCTCAATGGCTGGGAAGAAATGCCTAGAACTTGTTGCCCAAACTGTTGGGTTTGTCATTGTACCGCTTGTGATTCCATTTGTGGTGGCTAACAGAGTGAAACCAGATTGGCATTGTCGGGAGGCAGCAGTTTTTGCACTTGGTGCAATTATTGAAGGCTCAACCATCTACCAGGATCTTGGGGTCTTATTAAAATACTGTGAACTGGTCCGTGAACTTATAGATGACTTGCTTTTCTTAATGAATGATGAAAACAACCAAGTCAAAGAAACTACTGCATGGACTCTCGGTCGTATATTTGAATTTTTGCATAGTCCTGTTGGTGGATTTTCTGTGATTACTTCCGATAATCTTCCAATAGTGGTAGATATATTGGTGAAGAGCATTAGTGATGCTCCAAATGTTGCAACTAAGGTGTGTCGGGCGATTTATACACTTGCTGAGGGCTATGAGGAAGCTGGAATGCATTCATCTTTTTTTATGCCATATATCCCTAGGATCATTGAAAGTCTTCTTTTTGCTGCTAGTCGTGCAGATGTGGATGATTCGAAATTGAGGTCTGCTGCATATGAATCATTAAACGAGGTAGTGAAGTGTTCCAGCAGTACCGAAACACCACAGATTATAAGAGAATTACTCTCTGTGATTTTGGAGAGGTTGGGTCAGACTTTAGAGCTTCAGATTGTATCATCAGATGGCAAGGAAAAGCAAGCAGACTTGCAGGCTTCTCTTTGTGGAGTTCTCCAGGTTATAATCGAGAAAGTTAGCAGTGCCGATGATTTAGAAACCAGGTCCATTATGTTGACACAGGCAGACCAGATAATGTTTTTGTTTCTTAATGTCTTTTCTTGCCGAAGTTCTACAGTGCATGAGGAAGCCATGCTTGCTATTGGTGCCCTTGCTCATGCTACTGGGTCTGAGTTTGGCAAGTACCTTCCTGAATTATACAAGTACTTGAAGAGGGGGTTGCAAAATTTCAAGGACTATCAAGCCTGTTCTGTCACAGTTGGTGTGGTTGGCGACATTGCTCGTGCCTTGAAGTACAAGGTAGTACCATATTGTGATGGGATTATGCAAATTCTGTTGACGAATCTTTCTAGTGAAGCACTCGACCGGTCTGTCAAGCCTCCCATATTCTCTGTCATTGGCGACATAGCTCTCTCAATAGATGAAAACTTTCAGAAGTATGTTGACTCTGCAGTGCCAATGATGCAGAGAGCTGCGGAGCTGTGTGCTCAGATGGACTCCAATGATGATGAGTTATTGGAGTACGGCAGTCAGCTCAAGTGTAGCATCTTTGAAGCTTATTCTGGTATACTTCGGGGCACCAAGAAGTCTAAGATCATGATGCCATATGCCCAGCTTCTCTACGAGTTTATAGGATTTGTTTTGAAGGAGAAAGACAGGGATATGCTTCTAAGAAAAGCTTTAGCTGCTGTGATGGATGACCTTGCAGATTTACTTGGTACAAACACAAAGACACTCTTTGGAGACCTTACTGCTCGTGTAACATATACTGGTGCGTGTCTTCAATCTGATGGTGATAACCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

868

Amino Acids

96.67

Weight (kDa)

4.89

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 23 - 103 9.4e-09 Importin-beta N-terminal domain
TPR_IPO5 PF25780 106 - 265 2.6e-09 IPO5-like, TPR repeats
HEAT_EZ PF13513 387 - 449 1.9e-06 HEAT-like repeat
TPR_IMB1 PF25574 471 - 840 2.9e-90 Importin subunit beta-1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1676, 1802
AasI GACNNNNNNGTC 2 cut(s) 304, 2168
Acc36I ACCTGC 1 cut(s) 115
AccB1I GGYRCC 2 cut(s) 1943, 2375
AccI GTMKAC 1 cut(s) 2365
AccII CGCG 2 cut(s) 429, 970
AciI CCGC 3 cut(s) 806, 1115, 2273
AclWI GGATC 2 cut(s) 1233, 1556
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 86, 972, 1352, 2023, 2127
AcuI CTGAAG 4 cut(s) 84, 491, 594, 1712
AdeI CACNNNGTG 1 cut(s) 1193
AfaI GTAC 9 cut(s) 61, 1113, 1657, 1982, 2003, 2093, 2103, 2321, 2518
AfiI CCNNNNNNNGG 1 cut(s) 1373
AflII CTTAAG 1 cut(s) 188
AgeI ACCGGT 1 cut(s) 2163
AhdI GACNNNNNGTC 1 cut(s) 1338
AjnI CCWGG 4 cut(s) 1029, 1221, 1794, 1838
Alw21I GWGCWC 1 cut(s) 2287
Alw26I GTCTC 4 cut(s) 674, 890, 992, 2535
AlwI GGATC 2 cut(s) 1233, 1556
AlwNI CAGNNNCTG 1 cut(s) 912
AoxI GGCC 2 cut(s) 3, 386
ApeKI GCWGC 7 cut(s) 587, 716, 1175, 1571, 1613, 2270, 2483
ApoI RAATTY 5 cut(s) 86, 972, 1352, 2023, 2127
ArsI GACNNNNNNTTYG 2 cut(s) 1592, 1624
AsiGI ACCGGT 1 cut(s) 2163
Asp700I GAANNNNTTC 3 cut(s) 1516, 1560, 2226
AspA2I CCTAGG 1 cut(s) 1544
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 2 cut(s) 1258, 1842
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 1438, 2603
AsuII TTCGAA 1 cut(s) 1598
AsuNHI GCTAGC 1 cut(s) 136
AvaII GGWCC 2 cut(s) 1258, 1842
AvrII CCTAGG 1 cut(s) 1544
BaeGI GKGCMC 2 cut(s) 1948, 2378
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 1943, 2375
BauI CACGAG 2 cut(s) 2079, 2553
BbsI GAAGAC 2 cut(s) 1553, 2570
Bbv12I GWGCWC 1 cut(s) 2287
BbvCI CCTCAGC 1 cut(s) 1491
BbvI GCAGC 7 cut(s) 574, 703, 1187, 1558, 1600, 2257, 2470
BccI CCATC 9 cut(s) 241, 504, 640, 1223, 1739, 2108, 2284, 2485, 2582
BceAI ACGGC 1 cut(s) 2338
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BciT130I CCWGG 4 cut(s) 1031, 1223, 1796, 1840
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 4 cut(s) 674, 890, 992, 2535
BfaI CTAG 7 cut(s) 137, 200, 995, 1076, 1545, 1575, 2148
BfmI CTRYAG 2 cut(s) 1911, 2247
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 115
BisI GCNGC 7 cut(s) 588, 717, 1176, 1572, 1614, 2271, 2484
BlnI CCTAGG 1 cut(s) 1544
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 7 cut(s) 589, 718, 1177, 1573, 1615, 2272, 2485
BmcAI AGTACT 1 cut(s) 2003
Bme1390I CCNGG 5 cut(s) 376, 1031, 1223, 1796, 1840
Bme18I GGWCC 2 cut(s) 1258, 1842
BmeRI GACNNNNNGTC 1 cut(s) 1338
BmgT120I GGNCC 2 cut(s) 1258, 1842
BmiI GGNNCC 2 cut(s) 1945, 2377
BmrFI CCNGG 5 cut(s) 376, 1031, 1223, 1796, 1840
BmrI ACTGGG 1 cut(s) 1971
BmsI GCATC 6 cut(s) 37, 193, 1432, 2250, 2352, 2388
BmtI GCTAGC 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 1971
BpiI GAAGAC 2 cut(s) 1553, 2570
BplI GAGNNNNNCTC 2 cut(s) 1671, 1703
BpmI CTGGAG 2 cut(s) 874, 1778
Bpu10I CCTNAGC 2 cut(s) 390, 1491
Bpu1102I GCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 1598
BpuEI CTTGAG 2 cut(s) 581, 2318
BpuMI CCSGG 1 cut(s) 376
BsaI GGTCTC 1 cut(s) 2535
BsaJI CCNNGG 5 cut(s) 6, 374, 459, 612, 1544
BsaWI WCCGGW 2 cut(s) 928, 2163
Bsc4I CCNNNNNNNGG 1 cut(s) 1373
Bse118I RCCGGY 2 cut(s) 440, 2163
Bse1I ACTGG 4 cut(s) 155, 1260, 1966, 2572
Bse3DI GCAATG 2 cut(s) 248, 2073
BseBI CCWGG 4 cut(s) 1031, 1223, 1796, 1840
BseDI CCNNGG 5 cut(s) 6, 374, 459, 612, 1544
BseGI GGATG 6 cut(s) 252, 496, 823, 1039, 1597, 2500
BseLI CCNNNNNNNGG 1 cut(s) 1373
BseMI GCAATG 2 cut(s) 248, 2073
BseMII CTCAG 8 cut(s) 32, 71, 251, 381, 638, 1482, 1959, 2300
BseNI ACTGG 4 cut(s) 155, 1260, 1966, 2572
BseRI GAGGAG 1 cut(s) 933
BseSI GKGCMC 2 cut(s) 1948, 2378
BseXI GCAGC 7 cut(s) 574, 703, 1187, 1558, 1600, 2257, 2470
BseYI CCCAGC 2 cut(s) 1061, 2409
BsgI GTGCAG 1 cut(s) 1602
Bsh1236I CGCG 2 cut(s) 429, 970
Bsh1285I CGRYCG 2 cut(s) 1342, 2164
BshFI GGCC 2 cut(s) 5, 388
BshNI GGYRCC 2 cut(s) 1943, 2375
BshTI ACCGGT 1 cut(s) 2163
BsiEI CGRYCG 2 cut(s) 1342, 2164
BsiHKAI GWGCWC 1 cut(s) 2287
BsiSI CCGG 4 cut(s) 376, 441, 929, 2164
BslFI GGGAC 2 cut(s) 781, 932
BslI CCNNNNNNNGG 1 cut(s) 1373
BsmAI GTCTC 4 cut(s) 674, 890, 992, 2535
BsmFI GGGAC 2 cut(s) 781, 932
BsmI GAATGC 2 cut(s) 1516, 1518
BsnI GGCC 2 cut(s) 5, 388
Bso31I GGTCTC 1 cut(s) 2535
Bsp119I TTCGAA 1 cut(s) 1598
Bsp1286I GDGCHC 3 cut(s) 1948, 2287, 2378
Bsp143I GATC 6 cut(s) 12, 502, 672, 1225, 1548, 2391
Bsp1720I GCTNAGC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 6
Bsp68I TCGCGA 1 cut(s) 970
BspACI CCGC 3 cut(s) 806, 1115, 2273
BspANI GGCC 2 cut(s) 5, 388
BspCNI CTCAG 8 cut(s) 31, 72, 250, 382, 637, 1483, 1960, 2299
BspFNI CGCG 2 cut(s) 429, 970
BspHI TCATGA 2 cut(s) 663, 2394
BspLI GGNNCC 2 cut(s) 1945, 2377
BspMAI CTGCAG 1 cut(s) 2251
BspMI ACCTGC 1 cut(s) 115
BspOI GCTAGC 1 cut(s) 140
BspPI GGATC 2 cut(s) 1233, 1556
BspQI GCTCTTC 1 cut(s) 1424
BspT104I TTCGAA 1 cut(s) 1598
BspT107I GGYRCC 2 cut(s) 1943, 2375
BspTI CTTAAG 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 2535
BsrDI GCAATG 2 cut(s) 248, 2073
BsrFI RCCGGY 2 cut(s) 440, 2163
BsrI ACTGG 4 cut(s) 155, 1260, 1966, 2572
BssAI RCCGGY 2 cut(s) 440, 2163
BssECI CCNNGG 5 cut(s) 6, 374, 459, 612, 1544
BssMI GATC 6 cut(s) 12, 502, 672, 1225, 1548, 2391
BssNAI GTATAC 1 cut(s) 2366
BssSI CACGAG 2 cut(s) 2079, 2553
BssT1I CCWWGG 4 cut(s) 6, 459, 612, 1544
Bst1107I GTATAC 1 cut(s) 2366
Bst2BI CACGAG 2 cut(s) 2079, 2553
Bst2UI CCWGG 4 cut(s) 1031, 1223, 1796, 1840
Bst4CI ACNGT 8 cut(s) 384, 453, 569, 914, 1096, 1250, 1915, 2056
Bst6I CTCTTC 2 cut(s) 1424, 2003
BstAFI CTTAAG 1 cut(s) 188
BstAPI GCANNNNNTGC 2 cut(s) 1184, 1193
BstBI TTCGAA 1 cut(s) 1598
BstC8I GCNNGC 7 cut(s) 138, 287, 714, 780, 1761, 1773, 1935
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 6 cut(s) 252, 496, 823, 1039, 1597, 2500
BstFNI CGCG 2 cut(s) 429, 970
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 6 cut(s) 15, 505, 675, 1228, 1551, 2394
BstMAI GTCTC 4 cut(s) 674, 890, 992, 2535
BstMBI GATC 6 cut(s) 12, 502, 672, 1225, 1548, 2391
BstMCI CGRYCG 2 cut(s) 1342, 2164
BstNI CCWGG 4 cut(s) 1031, 1223, 1796, 1840
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 5 cut(s) 374, 1029, 1221, 1794, 1838
BstSFI CTRYAG 2 cut(s) 1911, 2247
BstSLI GKGCMC 2 cut(s) 1948, 2378
BstUI CGCG 2 cut(s) 429, 970
BstV1I GCAGC 7 cut(s) 574, 703, 1187, 1558, 1600, 2257, 2470
BstV2I GAAGAC 2 cut(s) 1553, 2570
BstX2I RGATCY 1 cut(s) 1225
BstXI CCANNNNNNTGG 2 cut(s) 1097, 1229
BstYI RGATCY 1 cut(s) 1225
BstZ17I GTATAC 1 cut(s) 2366
BsuRI GGCC 2 cut(s) 5, 388
BtgI CCRYGG 1 cut(s) 6
BtsCI GGATG 6 cut(s) 252, 496, 823, 1039, 1597, 2500
BtsI GCAGTG 2 cut(s) 1825, 2256
BtsIMutI CAGTG 4 cut(s) 389, 1825, 1920, 2256
BtuMI TCGCGA 1 cut(s) 970
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 7 cut(s) 138, 287, 714, 780, 1761, 1773, 1935
CaiI CAGNNNCTG 1 cut(s) 912
CciI TCATGA 2 cut(s) 663, 2394
CfoI GCGC 1 cut(s) 429
Cfr10I RCCGGY 2 cut(s) 440, 2163
Cfr13I GGNCC 2 cut(s) 1258, 1842
CsiI ACCWGGT 1 cut(s) 1838
Csp6I GTAC 9 cut(s) 60, 1112, 1656, 1981, 2002, 2092, 2102, 2320, 2517
CspAI ACCGGT 1 cut(s) 2163
CviAII CATG 9 cut(s) 7, 418, 664, 775, 1329, 1919, 1930, 1955, 2395
CviQI GTAC 9 cut(s) 60, 1112, 1656, 1981, 2002, 2092, 2102, 2320, 2517
DpnI GATC 6 cut(s) 14, 504, 674, 1227, 1550, 2393
DpnII GATC 6 cut(s) 12, 502, 672, 1225, 1548, 2391
DraI TTTAAA 1 cut(s) 268
DraIII CACNNNGTG 1 cut(s) 1193
DrdI GACNNNNNNGTC 2 cut(s) 304, 2168
DriI GACNNNNNGTC 1 cut(s) 1338
DseDI GACNNNNNNGTC 2 cut(s) 304, 2168
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 1424, 2003
Eam1105I GACNNNNNGTC 1 cut(s) 1338
EarI CTCTTC 2 cut(s) 1424, 2003
Eco130I CCWWGG 4 cut(s) 6, 459, 612, 1544
Eco31I GGTCTC 1 cut(s) 2535
Eco47I GGWCC 2 cut(s) 1258, 1842
Eco57I CTGAAG 4 cut(s) 84, 491, 594, 1712
EcoRII CCWGG 4 cut(s) 1029, 1221, 1794, 1838
EcoT14I CCWWGG 4 cut(s) 6, 459, 612, 1544
EcoT22I ATGCAT 1 cut(s) 1518
ErhI CCWWGG 4 cut(s) 6, 459, 612, 1544
FaeI CATG 9 cut(s) 10, 421, 667, 778, 1332, 1922, 1933, 1958, 2398
FalI AAGNNNNNCTT 8 cut(s) 567, 599, 1917, 1949, 2461, 2493, 2519, 2551
FaqI GGGAC 2 cut(s) 781, 932
FatI CATG 9 cut(s) 6, 417, 663, 774, 1328, 1918, 1929, 1954, 2394
FauNDI CATATG 2 cut(s) 1618, 2404
FblI GTMKAC 1 cut(s) 2365
Fnu4HI GCNGC 7 cut(s) 588, 717, 1176, 1572, 1614, 2271, 2484
FokI GGATG 6 cut(s) 259, 483, 830, 1046, 1604, 2507
Fsp4HI GCNGC 7 cut(s) 588, 717, 1176, 1572, 1614, 2271, 2484
FspBI CTAG 7 cut(s) 137, 200, 995, 1076, 1545, 1575, 2148
GlaI GCGC 1 cut(s) 428
GluI GCNGC 7 cut(s) 588, 717, 1176, 1572, 1614, 2271, 2484
GsaI CCCAGC 2 cut(s) 1065, 2413
GsuI CTGGAG 2 cut(s) 874, 1778
HaeIII GGCC 2 cut(s) 5, 388
HapII CCGG 4 cut(s) 376, 441, 929, 2164
HhaI GCGC 1 cut(s) 429
Hin1II CATG 9 cut(s) 10, 421, 667, 778, 1332, 1922, 1933, 1958, 2398
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HincII GTYRAC 4 cut(s) 456, 1854, 2136, 2242
HindII GTYRAC 4 cut(s) 456, 1854, 2136, 2242
HindIII AAGCTT 2 cut(s) 2352, 2475
HpaII CCGG 4 cut(s) 376, 441, 929, 2164
HphI GGTGA 2 cut(s) 1438, 2603
Hpy166II GTNNAC 8 cut(s) 456, 523, 1253, 1265, 1854, 2136, 2242, 2366
Hpy8I GTNNAC 8 cut(s) 456, 523, 1253, 1265, 1854, 2136, 2242, 2366
HpyAV CCTTC 6 cut(s) 125, 162, 845, 1199, 1994, 2437
HpyCH4III ACNGT 8 cut(s) 384, 453, 569, 914, 1096, 1250, 1915, 2056
HpyCH4IV ACGT 1 cut(s) 952
HpySE526I ACGT 1 cut(s) 952
Hsp92II CATG 9 cut(s) 10, 421, 667, 778, 1332, 1922, 1933, 1958, 2398
HspAI GCGC 1 cut(s) 427
Kzo9I GATC 6 cut(s) 12, 502, 672, 1225, 1548, 2391
LguI GCTCTTC 1 cut(s) 1424
LmnI GCTCC 2 cut(s) 1450, 2275
Lsp1109I GCAGC 7 cut(s) 574, 703, 1187, 1558, 1600, 2257, 2470
LweI GCATC 6 cut(s) 37, 193, 1432, 2250, 2352, 2388
MabI ACCWGGT 1 cut(s) 1838
MaeI CTAG 7 cut(s) 137, 200, 995, 1076, 1545, 1575, 2148
MaeII ACGT 1 cut(s) 952
MaeIII GTNAC 2 cut(s) 2050, 2557
MalI GATC 6 cut(s) 14, 504, 674, 1227, 1550, 2393
MboI GATC 6 cut(s) 12, 502, 672, 1225, 1548, 2391
MfeI CAATTG 2 cut(s) 738, 843
MflI RGATCY 1 cut(s) 1225
MhlI GDGCHC 3 cut(s) 1948, 2287, 2378
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 914, 1327, 2237, 2288
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1518
MroXI GAANNNNTTC 3 cut(s) 1516, 1560, 2226
MscI TGGCCA 1 cut(s) 5
MseI TTAA 7 cut(s) 189, 267, 411, 1241, 1289, 1628, 1887
MslI CAYNNNNRTG 1 cut(s) 668
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 539, 902
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 4 cut(s) 376, 441, 929, 2164
MspR9I CCNGG 5 cut(s) 376, 1031, 1223, 1796, 1840
MunI CAATTG 2 cut(s) 738, 843
Mva1269I GAATGC 2 cut(s) 1516, 1518
MvaI CCWGG 4 cut(s) 1031, 1223, 1796, 1840
MvnI CGCG 2 cut(s) 429, 970
NciI CCSGG 1 cut(s) 376
NcoI CCATGG 1 cut(s) 6
NdeI CATATG 2 cut(s) 1618, 2404
NdeII GATC 6 cut(s) 12, 502, 672, 1225, 1548, 2391
NheI GCTAGC 1 cut(s) 136
NlaIII CATG 9 cut(s) 10, 421, 667, 778, 1332, 1922, 1933, 1958, 2398
NlaIV GGNNCC 2 cut(s) 1945, 2377
NmuCI GTSAC 1 cut(s) 2050
NruI TCGCGA 1 cut(s) 970
NsiI ATGCAT 1 cut(s) 1518
NspI RCATGY 1 cut(s) 778
NspV TTCGAA 1 cut(s) 1598
PagI TCATGA 2 cut(s) 663, 2394
PciSI GCTCTTC 1 cut(s) 1424
PctI GAATGC 2 cut(s) 1516, 1518
PdmI GAANNNNTTC 3 cut(s) 1516, 1560, 2226
PfeI GAWTC 9 cut(s) 71, 161, 212, 421, 556, 1123, 1595, 1622, 2140
PinAI ACCGGT 1 cut(s) 2163
PkrI GCNGC 7 cut(s) 589, 718, 1177, 1573, 1615, 2272, 2485
PleI GAGTC 4 cut(s) 914, 1327, 2237, 2288
PpsI GAGTC 4 cut(s) 914, 1327, 2237, 2288
PsiI TTATAA 2 cut(s) 1676, 1802
Psp6I CCWGG 4 cut(s) 1029, 1221, 1794, 1838
PspFI CCCAGC 2 cut(s) 1061, 2409
PspGI CCWGG 4 cut(s) 1029, 1221, 1794, 1838
PspN4I GGNNCC 2 cut(s) 1945, 2377
PspPI GGNCC 2 cut(s) 1258, 1842
PsrI GAACNNNNNNTAC 2 cut(s) 513, 545
PstI CTGCAG 1 cut(s) 2251
PstNI CAGNNNCTG 1 cut(s) 912
PsuI RGATCY 1 cut(s) 1225
PvuII CAGCTG 2 cut(s) 539, 902
RruI TCGCGA 1 cut(s) 970
RsaI GTAC 9 cut(s) 61, 1113, 1657, 1982, 2003, 2093, 2103, 2321, 2518
RsaNI GTAC 9 cut(s) 60, 1112, 1656, 1981, 2002, 2092, 2102, 2320, 2517
RseI CAYNNNNRTG 1 cut(s) 668
SapI GCTCTTC 1 cut(s) 1424
SaqAI TTAA 7 cut(s) 189, 267, 411, 1241, 1289, 1628, 1887
SatI GCNGC 7 cut(s) 588, 717, 1176, 1572, 1614, 2271, 2484
Sau3AI GATC 6 cut(s) 12, 502, 672, 1225, 1548, 2391
Sau96I GGNCC 2 cut(s) 1258, 1842
ScaI AGTACT 1 cut(s) 2003
SchI GAGTC 4 cut(s) 914, 1327, 2237, 2288
ScrFI CCNGG 5 cut(s) 376, 1031, 1223, 1796, 1840
SduI GDGCHC 3 cut(s) 1948, 2287, 2378
SexAI ACCWGGT 1 cut(s) 1838
SfaNI GCATC 6 cut(s) 37, 193, 1432, 2250, 2352, 2388
SfcI CTRYAG 2 cut(s) 1911, 2247
SfuI TTCGAA 1 cut(s) 1598
SinI GGWCC 2 cut(s) 1258, 1842
SmiI ATTTAAAT 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 668
SmlI CTYRAG 3 cut(s) 188, 560, 2333
SmoI CTYRAG 3 cut(s) 188, 560, 2333
SsiI CCGC 3 cut(s) 806, 1115, 2273
SspI AATATT 1 cut(s) 990
SspMI CTAG 7 cut(s) 137, 200, 995, 1076, 1545, 1575, 2148
StyD4I CCNGG 5 cut(s) 374, 1029, 1221, 1794, 1838
StyI CCWWGG 4 cut(s) 6, 459, 612, 1544
SwaI ATTTAAAT 1 cut(s) 268
TaaI ACNGT 8 cut(s) 384, 453, 569, 914, 1096, 1250, 1915, 2056
TaiI ACGT 1 cut(s) 955
TaqI TCGA 3 cut(s) 1598, 1806, 2160
TaqII GACCGA 1 cut(s) 1328
TatI WGTACW 2 cut(s) 2001, 2091
TfiI GAWTC 9 cut(s) 71, 161, 212, 421, 556, 1123, 1595, 1622, 2140
Tru1I TTAA 7 cut(s) 189, 267, 411, 1241, 1289, 1628, 1887
Tru9I TTAA 7 cut(s) 189, 267, 411, 1241, 1289, 1628, 1887
TscAI CASTG 4 cut(s) 389, 1825, 1920, 2256
TseFI GTSAC 1 cut(s) 2050
TseI GCWGC 7 cut(s) 587, 716, 1175, 1571, 1613, 2270, 2483
Tsp45I GTSAC 1 cut(s) 2050
TspDTI ATGAA 8 cut(s) 162, 569, 680, 1307, 1314, 1509, 1635, 2235
TspGWI ACGGA 2 cut(s) 569, 1250
TspRI CASTG 4 cut(s) 389, 1825, 1920, 2256
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 1258, 1842
XapI RAATTY 5 cut(s) 86, 972, 1352, 2023, 2127
XceI RCATGY 1 cut(s) 778
XmaJI CCTAGG 1 cut(s) 1544
XmiI GTMKAC 1 cut(s) 2365
XmnI GAANNNNTTC 3 cut(s) 1516, 1560, 2226
XspI CTAG 7 cut(s) 137, 200, 995, 1076, 1545, 1575, 2148
ZrmI AGTACT 1 cut(s) 2003
Zsp2I ATGCAT 1 cut(s) 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.