Rroxscaffold_6G00417720

HEAT-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003507
Physical Location & Seq
Reverse (-)
39370858 .. 39374754
3897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417720.1

Sequence Viewer

Length: 2679 bp
ATGTCTGGTTATCTAGTCCTATATATCCCTTTTGGGGATTTCCTTTGTGGCGTTGACGCGTTGTGGAAAGAAATGGCCATGGAGATCACTCAGTATCTATTGTCAGCTCAATCAGCAGACGCAAGAGTTCGTACTGAAGCAGAATCTAATCTGAGGAAATTTCAAGAGCAAAACCTACCTGATTTCCTTCTGTTGTTGTCGGTTGAGCTAGCAAACAATGAAAAGCCAGTTGAATCCCGAAGGTTGGCTGGTATTGTTCTTAAGAACTTACTAGATGTCAAAGATTCTGCTACAAAGAAACATCTTGCTCAGCAATGGATGGCTATTGATATTGCATTTAAATCCCAAATCAAGAGCTGGCTCTTACAGACACTTGGGTCATCTGTGCCAGAGGCAAGGCGCACCTCTGCCCAAGTTCTTGCCAAAGTTGCTTCTATTGATGTTCCCCAGAAACAGTGGCCTGAGCTAATCGGACATTTGCTTAATAACATGATTCAGCGCGATAGCTCTGCTGATTTGAAACGGTCAACCTTGGAAACTCTTGGTTATGTATGCGAGGAAATATCCCATCCTGATCTTCAGCAAGATGAAGTAAACTCTGTTCTTACAGCTGTAATTCAAGGAATGAATCTTGAGAACAGTTCTGAAGTCCGTCTTGCTGCAACAAGGGCATTATGTAATGCCTTGGAGTTTGCTCAGACAAACTTTGAAAATGAGATGGAACGAACTTACATCATGAAGATGATCTGTGACACTGCCTTATCTAAGGAGGTAGAGGTTAGGCAGGCTGCTTTTGAGTGCCTTGCCTCAATTGCTTCTACGTACTATTCTGTGCTTGGGACTTACCTGCAGGCTCTCTTTGAGCTTACATCAAATGCGGTAAAAGGGGATGTAGAACCTGTTGCCCTTCAAGCAATTGAGTTCTGGAGTTCCATTTGTGAAAAAGAAATAGAATTGCAAAAGCATGAGACAGCTGACAGGAACTGTTGGGACTCTTTACCGGACTTTGTGCCTCCTCATTCACGTTTTATAGAAAAATCTCGAATTTCTCTAATTCCAATATTGCTAGAGACTTTGCTGATGCAGGAAGAAAATGTAAGCCAGGATGACAACATTTGGAATATCTCAATGGCTGGGAAGAAATGCCTAGAACTTGTTGCCCAAACTGTTGGGTTTGTCATTGTACCGCTTGTGATTCCATTTGTGGTGGCTAACAGAGTGAAACCAGATTGGCATTGTCGGGAGGCAGCAGTTTTTGCACTTGGTGCAATTATTGAAGGCTCAACCATCTATCAGGATCTTGGGGTCTTATTAAAATACTGTGAACTGGTCCGTGAACTTATAGATGACTTGCTTTTCTTAATGAATGATGAAAACAACCAAGTCAAAGAAACTACTGCATGGACTCTCGGTCGTATATTTGAATTTTTGCATAGTCCTGTTGGTGGATTTTCTGTGATTACTTCCGATAATCTTCCAATAGTGGTAGATATATTGGTGAAGAGCGTTAGTGATGCTCCAAATGTTGCAACTAAGGTGTGTCGGGTAATTTATACACTTGCTGAGGGCTATGAGGAAGCTGGAATGCATTCATCTTTTTTTATGCCATATATCCCTAGGATCATTGAAAGTCTTCTTTTTGCTTCTAGTCGTGCAGATGTGGATGATTCGAAATTGAGGTCTGCTGCATATGAATCATTAAACGAGGTAGTGAGGTGTTCCAGCAGTACCGAAACACCACAGATTATAAGAGAACTACTCTCTGTGATTTTGGAGAGGTTGAGTCAGACTTTAGAGCTTCAGATTGTATCATCAGATGGCAAGGAAAAGCAAGCAGACTTGCAGGCTTCTCTTTGTGGAGTTCTCCAGGTTATAATCGAGAAAGTTAGCAGTGCCGATGATTTAGAAACCCGGTCCATTGTGTTGACACAGGCAGACCAGATAATGTTTTTGTTTCTTAATGTCTTTGCTTGCCGAAGTTCTACAGTGCATAAGGAAGCCATGCTTGCTATTGGTGCCCTTGCTCATGCTACTAGGTCGGAGTTTGGCAAGTACCTTCCTGAATTATACAAGTACTTGAAGAGGGGGTTGCAAAATTTCAAGGACTATCAAGCCTGTTCTGTCACAGTTGGTGTGGTTGGCGACATTGTTCGTGCCTTGAAGTACAAGGTAGTACCATATTGTGATGGGATTATGCAAATTCTGTTAACGAATCTTTCTAGTGAAGCACTCGACCGGTCTGTCAAGCCTCCCATATTCTCTGTCATTGGCGACATAGCTCTCTCAATAGATGAAAACTTTCAGAAGTATGTTGACTCTGCAGTGCCAATGATGCAGAGAGCTGCGGAGCTGTGTGCTCAGATGGACTCCAATGATGAAGAGTTATTGGAGTACGGCAGTCAGCTCAAGTGTAGCATCTTTGAAGCTTATTCTGGTATACTTCGGGGCACCAAGAAGTCTAAGATCATGATGCCATATGCCCAGCTTCTCTACGAGTTTATAGGATTTGTTTTGAAGGAGAAAGACAGGGATATCCTTCTAAGAAAAGCTTTAGCTGCTGTGATGGATGACCTTGCAGATTTACTTGGTACAAACTCAAAGACACTCTTTGGAGACCTTACTGCTCGTGTAACATATAATGGTGTGTGTCTTCAATCTGATTGTGATAACCTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

892

Amino Acids

99.67

Weight (kDa)

4.88

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 47 - 127 1.3e-09 Importin-beta N-terminal domain
TPR_IPO5 PF25780 130 - 289 2.3e-09 IPO5-like, TPR repeats
HEAT_EZ PF13513 411 - 473 1.9e-06 HEAT-like repeat
TPR_IMB1 PF25574 495 - 864 1.4e-87 Importin subunit beta-1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1748, 1874
AasI GACNNNNNNGTC 2 cut(s) 376, 2240
Acc36I ACCTGC 1 cut(s) 855
AccB1I GGYRCC 2 cut(s) 2015, 2447
AccI GTMKAC 1 cut(s) 2437
AccII CGCG 2 cut(s) 59, 501
AciI CCGC 3 cut(s) 878, 1187, 2345
AclWI GGATC 2 cut(s) 1305, 1628
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 5 cut(s) 158, 1044, 1424, 2095, 2199
AcuI CTGAAG 4 cut(s) 156, 563, 666, 1784
AdeI CACNNNGTG 1 cut(s) 1265
AfiI CCNNNNNNNGG 3 cut(s) 34, 244, 1445
AflII CTTAAG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 57
AgeI ACCGGT 1 cut(s) 2235
AhdI GACNNNNNGTC 1 cut(s) 1410
AjnI CCWGG 2 cut(s) 1101, 1866
Alw21I GWGCWC 1 cut(s) 2359
Alw26I GTCTC 3 cut(s) 962, 1064, 2607
AlwI GGATC 2 cut(s) 1305, 1628
AlwNI CAGNNNCTG 1 cut(s) 984
AoxI GGCC 2 cut(s) 75, 458
ApeKI GCWGC 6 cut(s) 659, 788, 1247, 1685, 2342, 2555
ApoI RAATTY 5 cut(s) 158, 1044, 1424, 2095, 2199
ArsI GACNNNNNNTTYG 2 cut(s) 1664, 1696
AsiGI ACCGGT 1 cut(s) 2235
Asp700I GAANNNNTTC 3 cut(s) 1588, 1632, 2298
AspA2I CCTAGG 1 cut(s) 1616
AspLEI GCGC 2 cut(s) 402, 501
AspS9I GGNCC 2 cut(s) 1330, 1914
AsuC2I CCSGG 1 cut(s) 1912
AsuHPI GGTGA 1 cut(s) 1510
AsuII TTCGAA 1 cut(s) 1670
AsuNHI GCTAGC 1 cut(s) 208
AvaII GGWCC 2 cut(s) 1330, 1914
AvrII CCTAGG 1 cut(s) 1616
BaeGI GKGCMC 2 cut(s) 2020, 2450
BalI TGGCCA 1 cut(s) 77
BanI GGYRCC 2 cut(s) 2015, 2447
BauI CACGAG 1 cut(s) 2625
BbsI GAAGAC 2 cut(s) 1625, 2642
Bbv12I GWGCWC 1 cut(s) 2359
BbvCI CCTCAGC 1 cut(s) 1563
BbvI GCAGC 6 cut(s) 646, 775, 1259, 1672, 2329, 2542
BccI CCATC 8 cut(s) 313, 576, 712, 1295, 1811, 2180, 2356, 2557
BceAI ACGGC 1 cut(s) 2410
BcgI CGANNNNNNTGC 2 cut(s) 491, 525
BciT130I CCWGG 2 cut(s) 1103, 1868
BcnI CCSGG 1 cut(s) 1912
BcoDI GTCTC 3 cut(s) 962, 1064, 2607
BfaI CTAG 9 cut(s) 14, 209, 272, 1067, 1148, 1617, 1647, 2034, 2220
BfmI CTRYAG 3 cut(s) 848, 1983, 2319
BfrI CTTAAG 1 cut(s) 260
BfuAI ACCTGC 1 cut(s) 855
BisI GCNGC 6 cut(s) 660, 789, 1248, 1686, 2343, 2556
BlnI CCTAGG 1 cut(s) 1616
BlpI GCTNAGC 1 cut(s) 309
BlsI GCNGC 6 cut(s) 661, 790, 1249, 1687, 2344, 2557
BmcAI AGTACT 1 cut(s) 2075
Bme1390I CCNGG 3 cut(s) 1103, 1868, 1912
Bme18I GGWCC 2 cut(s) 1330, 1914
BmeRI GACNNNNNGTC 1 cut(s) 1410
BmgT120I GGNCC 2 cut(s) 1330, 1914
BmiI GGNNCC 2 cut(s) 2017, 2449
BmrFI CCNGG 3 cut(s) 1103, 1868, 1912
BmsI GCATC 5 cut(s) 1071, 1504, 2322, 2424, 2460
BmtI GCTAGC 1 cut(s) 212
BpiI GAAGAC 2 cut(s) 1625, 2642
BplI GAGNNNNNCTC 2 cut(s) 1743, 1775
BpmI CTGGAG 2 cut(s) 946, 1850
Bpu10I CCTNAGC 2 cut(s) 462, 1563
Bpu1102I GCTNAGC 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 1670
BpuEI CTTGAG 2 cut(s) 653, 2390
BpuMI CCSGG 1 cut(s) 1912
BsaAI YACGTR 1 cut(s) 822
BsaI GGTCTC 1 cut(s) 2607
BsaJI CCNNGG 4 cut(s) 78, 531, 684, 1616
BsaWI WCCGGW 2 cut(s) 1000, 2235
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 244, 1445
Bse118I RCCGGY 1 cut(s) 2235
Bse1I ACTGG 2 cut(s) 227, 1332
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 2 cut(s) 1103, 1868
BseDI CCNNGG 4 cut(s) 78, 531, 684, 1616
BseGI GGATG 6 cut(s) 324, 568, 895, 1111, 1669, 2572
BseLI CCNNNNNNNGG 3 cut(s) 34, 244, 1445
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 7 cut(s) 104, 143, 323, 453, 710, 1554, 2372
BseNI ACTGG 2 cut(s) 227, 1332
BseRI GAGGAG 1 cut(s) 1005
BseSI GKGCMC 2 cut(s) 2020, 2450
BseXI GCAGC 6 cut(s) 646, 775, 1259, 1672, 2329, 2542
BseYI CCCAGC 2 cut(s) 1133, 2481
BsgI GTGCAG 1 cut(s) 1674
Bsh1236I CGCG 2 cut(s) 59, 501
Bsh1285I CGRYCG 2 cut(s) 1414, 2236
BshFI GGCC 2 cut(s) 77, 460
BshNI GGYRCC 2 cut(s) 2015, 2447
BshTI ACCGGT 1 cut(s) 2235
BsiEI CGRYCG 2 cut(s) 1414, 2236
BsiHKAI GWGCWC 1 cut(s) 2359
BsiSI CCGG 3 cut(s) 1001, 1912, 2236
BslFI GGGAC 2 cut(s) 853, 1004
BslI CCNNNNNNNGG 3 cut(s) 34, 244, 1445
BsmAI GTCTC 3 cut(s) 962, 1064, 2607
BsmFI GGGAC 2 cut(s) 853, 1004
BsmI GAATGC 2 cut(s) 1588, 1590
BsnI GGCC 2 cut(s) 77, 460
Bso31I GGTCTC 1 cut(s) 2607
Bsp119I TTCGAA 1 cut(s) 1670
Bsp1286I GDGCHC 3 cut(s) 2020, 2359, 2450
Bsp143I GATC 6 cut(s) 84, 574, 744, 1297, 1620, 2463
Bsp1720I GCTNAGC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 3 cut(s) 878, 1187, 2345
BspANI GGCC 2 cut(s) 77, 460
BspCNI CTCAG 7 cut(s) 103, 144, 322, 454, 709, 1555, 2371
BspFNI CGCG 2 cut(s) 59, 501
BspHI TCATGA 2 cut(s) 735, 2466
BspLI GGNNCC 2 cut(s) 2017, 2449
BspMAI CTGCAG 2 cut(s) 852, 2323
BspMI ACCTGC 1 cut(s) 855
BspOI GCTAGC 1 cut(s) 212
BspPI GGATC 2 cut(s) 1305, 1628
BspQI GCTCTTC 1 cut(s) 1496
BspT104I TTCGAA 1 cut(s) 1670
BspT107I GGYRCC 2 cut(s) 2015, 2447
BspTI CTTAAG 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 2607
BsrDI GCAATG 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 2235
BsrI ACTGG 2 cut(s) 227, 1332
BssAI RCCGGY 1 cut(s) 2235
BssECI CCNNGG 4 cut(s) 78, 531, 684, 1616
BssMI GATC 6 cut(s) 84, 574, 744, 1297, 1620, 2463
BssNAI GTATAC 1 cut(s) 2438
BssSI CACGAG 1 cut(s) 2625
BssT1I CCWWGG 4 cut(s) 78, 531, 684, 1616
Bst1107I GTATAC 1 cut(s) 2438
Bst2BI CACGAG 1 cut(s) 2625
Bst2UI CCWGG 2 cut(s) 1103, 1868
Bst4CI ACNGT 8 cut(s) 456, 525, 641, 986, 1168, 1322, 1987, 2128
Bst6I CTCTTC 3 cut(s) 1496, 2075, 2373
BstAFI CTTAAG 1 cut(s) 260
BstAPI GCANNNNNTGC 2 cut(s) 1256, 1265
BstBAI YACGTR 1 cut(s) 822
BstBI TTCGAA 1 cut(s) 1670
BstC8I GCNNGC 8 cut(s) 210, 359, 786, 852, 1833, 1845, 1972, 2007
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 6 cut(s) 324, 568, 895, 1111, 1669, 2572
BstFNI CGCG 2 cut(s) 59, 501
BstHHI GCGC 2 cut(s) 402, 501
BstKTI GATC 6 cut(s) 87, 577, 747, 1300, 1623, 2466
BstMAI GTCTC 3 cut(s) 962, 1064, 2607
BstMBI GATC 6 cut(s) 84, 574, 744, 1297, 1620, 2463
BstMCI CGRYCG 2 cut(s) 1414, 2236
BstNI CCWGG 2 cut(s) 1103, 1868
BstSCI CCNGG 3 cut(s) 1101, 1866, 1910
BstSFI CTRYAG 3 cut(s) 848, 1983, 2319
BstSLI GKGCMC 2 cut(s) 2020, 2450
BstSNI TACGTA 1 cut(s) 822
BstUI CGCG 2 cut(s) 59, 501
BstV1I GCAGC 6 cut(s) 646, 775, 1259, 1672, 2329, 2542
BstV2I GAAGAC 2 cut(s) 1625, 2642
BstX2I RGATCY 1 cut(s) 1297
BstXI CCANNNNNNTGG 1 cut(s) 1169
BstYI RGATCY 1 cut(s) 1297
BstZ17I GTATAC 1 cut(s) 2438
BsuRI GGCC 2 cut(s) 77, 460
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 6 cut(s) 324, 568, 895, 1111, 1669, 2572
BtsI GCAGTG 3 cut(s) 753, 1897, 2328
BtsIMutI CAGTG 5 cut(s) 461, 753, 1897, 1992, 2328
BveI ACCTGC 1 cut(s) 855
Cac8I GCNNGC 8 cut(s) 210, 359, 786, 852, 1833, 1845, 1972, 2007
CaiI CAGNNNCTG 1 cut(s) 984
CciI TCATGA 2 cut(s) 735, 2466
CfoI GCGC 2 cut(s) 402, 501
Cfr10I RCCGGY 1 cut(s) 2235
Cfr13I GGNCC 2 cut(s) 1330, 1914
CseI GACGC 2 cut(s) 65, 128
CspAI ACCGGT 1 cut(s) 2235
CviAII CATG 8 cut(s) 79, 490, 736, 965, 1401, 2002, 2027, 2467
DpnI GATC 6 cut(s) 86, 576, 746, 1299, 1622, 2465
DpnII GATC 6 cut(s) 84, 574, 744, 1297, 1620, 2463
DraI TTTAAA 1 cut(s) 340
DraIII CACNNNGTG 1 cut(s) 1265
DrdI GACNNNNNNGTC 2 cut(s) 376, 2240
DriI GACNNNNNGTC 1 cut(s) 1410
DseDI GACNNNNNNGTC 2 cut(s) 376, 2240
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 3 cut(s) 1496, 2075, 2373
Eam1105I GACNNNNNGTC 1 cut(s) 1410
EarI CTCTTC 3 cut(s) 1496, 2075, 2373
Eco105I TACGTA 1 cut(s) 822
Eco130I CCWWGG 4 cut(s) 78, 531, 684, 1616
Eco31I GGTCTC 1 cut(s) 2607
Eco32I GATATC 1 cut(s) 2533
Eco47I GGWCC 2 cut(s) 1330, 1914
Eco57I CTGAAG 4 cut(s) 156, 563, 666, 1784
EcoRII CCWGG 2 cut(s) 1101, 1866
EcoRV GATATC 1 cut(s) 2533
EcoT14I CCWWGG 4 cut(s) 78, 531, 684, 1616
EcoT22I ATGCAT 1 cut(s) 1590
ErhI CCWWGG 4 cut(s) 78, 531, 684, 1616
FaeI CATG 8 cut(s) 82, 493, 739, 968, 1404, 2005, 2030, 2470
FalI AAGNNNNNCTT 8 cut(s) 639, 671, 1989, 2021, 2533, 2565, 2591, 2623
FaqI GGGAC 2 cut(s) 853, 1004
FatI CATG 8 cut(s) 78, 489, 735, 964, 1400, 2001, 2026, 2466
FauNDI CATATG 2 cut(s) 1690, 2476
FblI GTMKAC 1 cut(s) 2437
Fnu4HI GCNGC 6 cut(s) 660, 789, 1248, 1686, 2343, 2556
FokI GGATG 6 cut(s) 331, 555, 902, 1118, 1676, 2579
Fsp4HI GCNGC 6 cut(s) 660, 789, 1248, 1686, 2343, 2556
FspBI CTAG 9 cut(s) 14, 209, 272, 1067, 1148, 1617, 1647, 2034, 2220
GlaI GCGC 2 cut(s) 401, 500
GluI GCNGC 6 cut(s) 660, 789, 1248, 1686, 2343, 2556
GsaI CCCAGC 2 cut(s) 1137, 2485
GsuI CTGGAG 2 cut(s) 946, 1850
HaeIII GGCC 2 cut(s) 77, 460
HapII CCGG 3 cut(s) 1001, 1912, 2236
HgaI GACGC 2 cut(s) 65, 128
HhaI GCGC 2 cut(s) 402, 501
Hin1II CATG 8 cut(s) 82, 493, 739, 968, 1404, 2005, 2030, 2470
Hin6I GCGC 2 cut(s) 400, 499
HinP1I GCGC 2 cut(s) 400, 499
HincII GTYRAC 5 cut(s) 55, 528, 1926, 2208, 2314
HindII GTYRAC 5 cut(s) 55, 528, 1926, 2208, 2314
HindIII AAGCTT 2 cut(s) 2424, 2547
HpaI GTTAAC 1 cut(s) 2208
HpaII CCGG 3 cut(s) 1001, 1912, 2236
HphI GGTGA 1 cut(s) 1510
Hpy166II GTNNAC 9 cut(s) 55, 528, 595, 1325, 1337, 1926, 2208, 2314, 2438
Hpy8I GTNNAC 9 cut(s) 55, 528, 595, 1325, 1337, 1926, 2208, 2314, 2438
HpyAV CCTTC 7 cut(s) 197, 234, 917, 1271, 2066, 2509, 2546
HpyCH4III ACNGT 8 cut(s) 456, 525, 641, 986, 1168, 1322, 1987, 2128
HpyCH4IV ACGT 2 cut(s) 821, 1024
HpySE526I ACGT 2 cut(s) 821, 1024
Hsp92II CATG 8 cut(s) 82, 493, 739, 968, 1404, 2005, 2030, 2470
HspAI GCGC 2 cut(s) 400, 499
KspAI GTTAAC 1 cut(s) 2208
Kzo9I GATC 6 cut(s) 84, 574, 744, 1297, 1620, 2463
LguI GCTCTTC 1 cut(s) 1496
LmnI GCTCC 2 cut(s) 1522, 2347
Lsp1109I GCAGC 6 cut(s) 646, 775, 1259, 1672, 2329, 2542
LweI GCATC 5 cut(s) 1071, 1504, 2322, 2424, 2460
MaeI CTAG 9 cut(s) 14, 209, 272, 1067, 1148, 1617, 1647, 2034, 2220
MaeII ACGT 2 cut(s) 821, 1024
MaeIII GTNAC 3 cut(s) 749, 2122, 2629
MalI GATC 6 cut(s) 86, 576, 746, 1299, 1622, 2465
MboI GATC 6 cut(s) 84, 574, 744, 1297, 1620, 2463
MfeI CAATTG 2 cut(s) 810, 915
MflI RGATCY 1 cut(s) 1297
MhlI GDGCHC 3 cut(s) 2020, 2359, 2450
MlsI TGGCCA 1 cut(s) 77
MluI ACGCGT 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 5 cut(s) 986, 1399, 1792, 2309, 2360
MmeI TCCRAC 1 cut(s) 2019
Mox20I TGGCCA 1 cut(s) 77
Mph1103I ATGCAT 1 cut(s) 1590
MroXI GAANNNNTTC 3 cut(s) 1588, 1632, 2298
MscI TGGCCA 1 cut(s) 77
MseI TTAA 8 cut(s) 261, 339, 483, 1313, 1361, 1700, 1959, 2207
MslI CAYNNNNRTG 1 cut(s) 740
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 2 cut(s) 611, 974
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 3 cut(s) 1001, 1912, 2236
MspR9I CCNGG 3 cut(s) 1103, 1868, 1912
MunI CAATTG 2 cut(s) 810, 915
Mva1269I GAATGC 2 cut(s) 1588, 1590
MvaI CCWGG 2 cut(s) 1103, 1868
MvnI CGCG 2 cut(s) 59, 501
NciI CCSGG 1 cut(s) 1912
NcoI CCATGG 1 cut(s) 78
NdeI CATATG 2 cut(s) 1690, 2476
NdeII GATC 6 cut(s) 84, 574, 744, 1297, 1620, 2463
NheI GCTAGC 1 cut(s) 208
NlaIII CATG 8 cut(s) 82, 493, 739, 968, 1404, 2005, 2030, 2470
NlaIV GGNNCC 2 cut(s) 2017, 2449
NmuCI GTSAC 2 cut(s) 749, 2122
NsiI ATGCAT 1 cut(s) 1590
NspV TTCGAA 1 cut(s) 1670
PagI TCATGA 2 cut(s) 735, 2466
PciSI GCTCTTC 1 cut(s) 1496
PctI GAATGC 2 cut(s) 1588, 1590
PdmI GAANNNNTTC 3 cut(s) 1588, 1632, 2298
PfeI GAWTC 9 cut(s) 143, 233, 284, 493, 628, 1195, 1667, 1694, 2212
PinAI ACCGGT 1 cut(s) 2235
PkrI GCNGC 6 cut(s) 661, 790, 1249, 1687, 2344, 2557
PleI GAGTC 5 cut(s) 986, 1399, 1791, 2309, 2360
PpsI GAGTC 5 cut(s) 986, 1399, 1791, 2309, 2360
Ppu21I YACGTR 1 cut(s) 822
PsiI TTATAA 2 cut(s) 1748, 1874
Psp6I CCWGG 2 cut(s) 1101, 1866
PspFI CCCAGC 2 cut(s) 1133, 2481
PspGI CCWGG 2 cut(s) 1101, 1866
PspN4I GGNNCC 2 cut(s) 2017, 2449
PspPI GGNCC 2 cut(s) 1330, 1914
PsrI GAACNNNNNNTAC 2 cut(s) 585, 617
PstI CTGCAG 2 cut(s) 852, 2323
PstNI CAGNNNCTG 1 cut(s) 984
PsuI RGATCY 1 cut(s) 1297
PvuII CAGCTG 2 cut(s) 611, 974
RseI CAYNNNNRTG 1 cut(s) 740
SapI GCTCTTC 1 cut(s) 1496
SaqAI TTAA 8 cut(s) 261, 339, 483, 1313, 1361, 1700, 1959, 2207
SatI GCNGC 6 cut(s) 660, 789, 1248, 1686, 2343, 2556
Sau3AI GATC 6 cut(s) 84, 574, 744, 1297, 1620, 2463
Sau96I GGNCC 2 cut(s) 1330, 1914
SbfI CCTGCAGG 1 cut(s) 852
ScaI AGTACT 1 cut(s) 2075
SchI GAGTC 5 cut(s) 986, 1399, 1792, 2309, 2360
ScrFI CCNGG 3 cut(s) 1103, 1868, 1912
SdaI CCTGCAGG 1 cut(s) 852
SduI GDGCHC 3 cut(s) 2020, 2359, 2450
SfaNI GCATC 5 cut(s) 1071, 1504, 2322, 2424, 2460
SfcI CTRYAG 3 cut(s) 848, 1983, 2319
SfuI TTCGAA 1 cut(s) 1670
SinI GGWCC 2 cut(s) 1330, 1914
SmiI ATTTAAAT 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 3 cut(s) 260, 632, 2405
SmoI CTYRAG 3 cut(s) 260, 632, 2405
SnaBI TACGTA 1 cut(s) 822
Sse8387I CCTGCAGG 1 cut(s) 852
SsiI CCGC 3 cut(s) 878, 1187, 2345
SspI AATATT 1 cut(s) 1062
SspMI CTAG 9 cut(s) 14, 209, 272, 1067, 1148, 1617, 1647, 2034, 2220
StyD4I CCNGG 3 cut(s) 1101, 1866, 1910
StyI CCWWGG 4 cut(s) 78, 531, 684, 1616
SwaI ATTTAAAT 1 cut(s) 340
TaaI ACNGT 8 cut(s) 456, 525, 641, 986, 1168, 1322, 1987, 2128
TaiI ACGT 2 cut(s) 824, 1027
TaqI TCGA 4 cut(s) 1042, 1670, 1878, 2232
TaqII GACCGA 1 cut(s) 1400
TatI WGTACW 2 cut(s) 2073, 2163
TfiI GAWTC 9 cut(s) 143, 233, 284, 493, 628, 1195, 1667, 1694, 2212
Tru1I TTAA 8 cut(s) 261, 339, 483, 1313, 1361, 1700, 1959, 2207
Tru9I TTAA 8 cut(s) 261, 339, 483, 1313, 1361, 1700, 1959, 2207
TscAI CASTG 5 cut(s) 461, 760, 1897, 1992, 2328
TseFI GTSAC 2 cut(s) 749, 2122
TseI GCWGC 6 cut(s) 659, 788, 1247, 1685, 2342, 2555
Tsp45I GTSAC 2 cut(s) 749, 2122
TspGWI ACGGA 2 cut(s) 641, 1322
TspRI CASTG 5 cut(s) 461, 760, 1897, 1992, 2328
Vha464I CTTAAG 1 cut(s) 260
VpaK11BI GGWCC 2 cut(s) 1330, 1914
XapI RAATTY 5 cut(s) 158, 1044, 1424, 2095, 2199
XmaJI CCTAGG 1 cut(s) 1616
XmiI GTMKAC 1 cut(s) 2437
XmnI GAANNNNTTC 3 cut(s) 1588, 1632, 2298
XspI CTAG 9 cut(s) 14, 209, 272, 1067, 1148, 1617, 1647, 2034, 2220
ZrmI AGTACT 1 cut(s) 2075
Zsp2I ATGCAT 1 cut(s) 1590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.