RLG00000024872

HEAT-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003507
Physical Location & Seq
Forward (+)
39933283 .. 39939429
6147 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024872

Sequence Viewer

Length: 3585 bp
ATGCCATTATTTTACTCAACTGCCTTCTACTATTTCCTCCTGATCACTCAACTTAAGCTTCAGTTCTTTCAATATATGCTCTTCGAAGTAAGATTTGCAGATGCTTTAGAAGCAAAATGTCCTAGAATGCTGAACTTCAATGCACCACTCCTCTCAACAAGGCGTCCCAGAAACTCAAGGAGCACAAGATTACATGGCAGGTCACTGAGTGCGAGTGAAGAAAGAGTTCCCTTTTCGTGGGAACAAGCTCCTGGCAAGTCCAAGTATCCAAACACAAGCGACGATAACCATGATGGTGACACACCCCGGCCAAAGCTGCCCCCTGGCTGGTGGCACTGGCACAAGCCTCTTGAATCAACTAACCACAAGCCTCTTGAATCAACTAACGTTGTTGTTCTGGACAAAGAGAAAGAACAGCCACTTCATGACCATGATGATGGATGTGATGCTGATATTGATGATGATGTTCGTGCTGTTGACTACAATTACGTTGATGATGCTGATTTCGACGATGAAGCCTTTTCCGATGCCATAGATGTGTTCTCATTGTCAGAGGCTATAGACATTGTGGAAAAGAAAGCACAAAGAGAACATGATCACTTAGATGCTCTGAAGTTGAAGCTCGCAGAGTCCAGTGAGATGAATCAACTGTCTCCAAACTACATAATCGAGCGCTTTCTTCCAGACGCAGCTGCATTGGCTGCATCATCTGCTATAAATCTAAGTGTATCACAGATCAGTTCAAACCAGAAACTTTATTATCCGTGGAATTACCCTGAACCGGAGGTTGGGCAATCTCACTCTTCACCTAAGGGTTGTGGTTTCTTCCCTTGGCGGATGAAGCAGCACAAGCTCTGTGGTATGAAGAGCCCTGTAGTGTGTTCACAACAACCTCAGTCTAGTGGTTTTAGAGCTATACTCGCCGCTACTTCATCGGCTCCGATTAGAGTGTGGAAAGAAATGGCCATGGAGATCACTCAGTATCTATTGGCAGCTCAATCAGCAGATGCAAGAGTTCGTACTGAAGCGGAGTCTAATCTGAGGCAATTTCAAGAGCAAAACCTTCCTGCTTTCCTTCTGTCATTGTCAGTTGAGCTAGCCAACAGCGAAAAGCCAATTGAATCCCGTAGGTTGGCTGGTATTGTTCTGAAGAACTCCTTGGATGCTAAAGATGCTGTTACAAAGGAACGTCTTGCTCAGCAATGGATGGCTGTTGATATTGCTTTTAAATCCCAAATCAAGGAAATGCTCTTACTGACACTTGCGTCATCTGTGCGAGAGGCAAGGCACACCTCTGCTCAAGTTCTTGCCAAAGTTGCTTCTATCGATATTCCTCGGAAACAGTGGCCTGAGCTAATTGCATATTTGCTTAATAACATGACTAAGGGAGACAGCTCTGCTGATTTGAAACAGTCAACCTTGGAAACTCTTGGTTATGTATGCGAGGAGATATCCCATCATGATCTTGGGCAAGACGAGGTGAATTCTATTCTTACAGCTGTTGTACAAGGAATGAACCTTGCTGAGAACAGTCCTGAAGTCCGTCTTGCTGCCACAAAGGCTTTATATAATGCCTTGGAGTTTGCTGAGACAAACTTTCAAAACGAGATGGAACGAACTTACATCATGAAGATGGTCTGTGAAACAGCCTTGTCGAAAGAGGTAGAGATTAGGCAGGCGGCTTTTGAGTGCCTTGCTTCAATTGCTTCTACTTACTATGATGTGCTTGAGGCATACATGCAGGCTCTCTTTGAGCTTACTTCAAATGCTGTAAAGGGGGATGTAGAGGCTGTTGCCCTCCAAGCAATCGAGTTTTGGAGCTCCATTTGTGATGAAGAAATAGAATTGCAAGAGTATGAGAGTGCTGATACTGGGGACTCTGGGCATCCACATTCACGTTTTATAGAAAAATCTCTATCATATCTAGTTCCAATGCTGCTGGAAACTTTGCTGAAGCAGGAAGAAGATGTAGACCAGGATGACAGCATTTGGAATATCTCAATGGCTGGTGGGACCTGCCTAGGACTTGTTGCACGAACTGTTGGTGATGCAATTCTTCCCCTTGTGATGCCATTTGTGGAGGCTAACATAGCGCAACCAGATTGGCGTTGTCAGGAAGCAGCTACTTTGGCATTTGGCTCAATCCTTGAAGGCCCAACCGTTGAGAAGCTATCAGTACTGGTCCATTCAGGTTTAGATTTCCTATTGAGGTTATTGAAAGATGGAAACAACCATGTCAAAGACACTACTGCCTGGACTATTGGCCGTATATTTGAGTACCTGCACAGTCCTGGTGGTGGCTTTTCTGTTATTTCTTCAGATAACCTTCCAAAAGTAGTGGAAGTATTGTTGGAAAGCATTAAGGATGCTCCAAATGTTGCTGCTAAGGTTTGTTGGGCTATTTATAAGCTTGCCGAGGGGTATGAGGATGCTGGAAGGCACTCATCACTTTTTACTCCTTATATCCATAGGATCATTGAAAGTCTTCTTTTTGCTGCTAGTCGTACAGATGTAGATGATTCTAGATTGAGGTCTGCTGCCTATGAATCATTGAACGAGGTAGTGAGGTGTTCTAATATTAAAGAAACATCACAGATTATACGAGAACTACTACCTGTGATTTTGCAGAAGTTGAGTCAGACTCTAGAGCTTCAGATTGTATCATCAGATGACAAGGAAAAGCAAGCAGACTTGCAGGCTTCTCTTTGTGGTGTTCTCCAGGTTATAATCCAGAAAGTTAGCAGTGCTGATGATTTGGAAACCAGGTCCATTATATTGACACAGGCAGACCAGATAATGTTTTTGTTTCTTAATGTCTTTGCTTGCCGAAGTTCTACGGTGCACGAGGAAGCAATGCTTGCTATTGGTGCCCTTGCTCATGCTACTGGATCTGAGTTTGGCAAGTACCTTCCAGACTTCTACAAGTATTTAGAGATGGGGTTGCAAAATTTCGAGGAATATCAAGTCTGTTCTATTACAGTTGGTGTAGTTGGTGATGTTGTTCGTGCCTTGAATGACAAGGTATTACCATATTGTGATGGGATTATGCAACTTCTGTTGGCAAATCTTTCTAGTGAAGCACTTGACCGGTCTGTCAAGCCTCCCATATTCTCTGTCTTTAGCGACATAGCTCTCTCAATAGAGGAGAATTTTGAGAAGTATGTTCCCTATGCAGTGCCAATGATGCAGAGAGCTGCAGAGCTTTGTGCTCAGATGGACCCCAATGATGATGAGCTAATGGAATACGGCAACCAGCTTAAGTGCAGCATATTTGAAGCTTATTCTGGTATACTTCAGGGATTTAAGAATTCAAAGTCTGAGGTCATGTTGCCCTATGCACCACATCTCTGGCAGTTCATCGAATTGGTTTTGAGGGAGCAACATAGGGATGTCCAGCTGACAAAAGCCTTGGCTGCTGTGATGGGGGACCTTGCAGATGTTCTTGGCACAAACACAAAGGCACTGTTTGGGGACCTGAAAGCCTGTGCAAACTTTTTGGGTGAGTGTCTTGGATCTGATGATGATGACCTGAAGAAAACCGCTACTTGGACTCAGGATAGGATTAGGAGCATCCTTGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

1195

Amino Acids

133.47

Weight (kDa)

4.83

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF688 PF05097 42 - 243 3.1e-08 Protein of unknown function (DUF688)
IBN_N PF03810 343 - 422 1.1e-09 Importin-beta N-terminal domain
TPR_IPO5 PF25780 427 - 586 1.7e-09 IPO5-like, TPR repeats
HEAT_EZ PF13513 702 - 757 1.6e-10 HEAT-like repeat
TPR_IMB1 PF25574 779 - 1150 5e-101 Importin subunit beta-1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2406, 2726
AasI GACNNNNNNGTC 2 cut(s) 1264, 3092
Acc36I ACCTGC 3 cut(s) 189, 2024, 2289
AccB1I GGYRCC 1 cut(s) 2867
AccI GTMKAC 2 cut(s) 1971, 3289
AciI CCGC 5 cut(s) 835, 924, 1028, 1679, 3540
AclI AACGTT 1 cut(s) 387
AclWI GGATC 3 cut(s) 2480, 2896, 3520
AcoI YGGCCR 3 cut(s) 308, 963, 2263
AcsI RAATTY 4 cut(s) 1483, 2947, 3148, 3307
AcyI GRCGYC 1 cut(s) 163
AdeI CACNNNGTG 1 cut(s) 209
AfaI GTAC 6 cut(s) 1021, 1506, 2178, 2279, 2506, 2906
AfeI AGCGCT 1 cut(s) 674
AfiI CCNNNNNNNGG 8 cut(s) 237, 327, 781, 788, 1132, 1240, 2297, 3546
AflII CTTAAG 2 cut(s) 53, 3257
AgeI ACCGGT 1 cut(s) 3087
AjnI CCWGG 7 cut(s) 250, 322, 1974, 2252, 2290, 2718, 2762
AjuI GAANNNNNNNTTGG 4 cut(s) 771, 803, 1142, 1174
Alw21I GWGCWC 4 cut(s) 185, 1823, 2844, 3211
Alw26I GTCTC 3 cut(s) 657, 1383, 1583
Alw44I GTGCAC 1 cut(s) 2840
AlwI GGATC 3 cut(s) 2480, 2896, 3520
Aor51HI AGCGCT 1 cut(s) 674
AoxI GGCC 5 cut(s) 308, 963, 1346, 2152, 2263
ApaLI GTGCAC 1 cut(s) 2840
ApoI RAATTY 4 cut(s) 1483, 2947, 3148, 3307
AsiGI ACCGGT 1 cut(s) 3087
Asp700I GAANNNNTTC 2 cut(s) 225, 2484
AspA2I CCTAGG 1 cut(s) 2020
AspLEI GCGC 2 cut(s) 675, 2095
AspS9I GGNCC 7 cut(s) 2013, 2153, 2182, 2766, 3217, 3427, 3472
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 6 cut(s) 308, 798, 1492, 2057, 3005, 3512
AsuII TTCGAA 1 cut(s) 84
AsuNHI GCTAGC 1 cut(s) 1096
AvaII GGWCC 6 cut(s) 2013, 2182, 2766, 3217, 3427, 3472
AvrII CCTAGG 1 cut(s) 2020
AxyI CCTNAGG 1 cut(s) 810
BaeGI GKGCMC 2 cut(s) 2844, 2872
BalI TGGCCA 1 cut(s) 965
BanI GGYRCC 1 cut(s) 2867
BanII GRGCYC 2 cut(s) 872, 1823
BauI CACGAG 1 cut(s) 2843
BbsI GAAGAC 1 cut(s) 2477
Bbv12I GWGCWC 4 cut(s) 185, 1823, 2844, 3211
BceAI ACGGC 2 cut(s) 2250, 3262
BciT130I CCWGG 7 cut(s) 252, 324, 1976, 2254, 2292, 2720, 2764
BciVI GTATCC 1 cut(s) 276
BclI TGATCA 2 cut(s) 42, 595
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 3 cut(s) 657, 1383, 1583
BfaI CTAG 9 cut(s) 123, 900, 1097, 1925, 2021, 2499, 2523, 2645, 3072
BfmI CTRYAG 3 cut(s) 558, 873, 3195
BfoI RGCGCY 1 cut(s) 676
BfrI CTTAAG 2 cut(s) 53, 3257
BfuAI ACCTGC 3 cut(s) 189, 2024, 2289
BfuI GTATCC 1 cut(s) 276
BglI GCCNNNNNGGC 1 cut(s) 1559
BlnI CCTAGG 1 cut(s) 2020
BlpI GCTNAGC 1 cut(s) 1197
BmcAI AGTACT 1 cut(s) 2178
Bme1390I CCNGG 8 cut(s) 252, 307, 324, 1976, 2254, 2292, 2720, 2764
Bme18I GGWCC 6 cut(s) 2013, 2182, 2766, 3217, 3427, 3472
BmgT120I GGNCC 7 cut(s) 2013, 2153, 2182, 2766, 3217, 3427, 3472
BmiI GGNNCC 6 cut(s) 939, 2014, 2869, 3219, 3428, 3473
BmrFI CCNGG 8 cut(s) 252, 307, 324, 1976, 2254, 2292, 2720, 2764
BmrI ACTGGG 1 cut(s) 1881
BmtI GCTAGC 1 cut(s) 1100
BmuI ACTGGG 1 cut(s) 1881
BpiI GAAGAC 1 cut(s) 2477
BplI GAGNNNNNCTC 4 cut(s) 903, 935, 2626, 2658
BpmI CTGGAG 1 cut(s) 2702
Bpu10I CCTNAGC 2 cut(s) 1350, 2385
Bpu1102I GCTNAGC 1 cut(s) 1197
Bpu14I TTCGAA 1 cut(s) 84
BpuEI CTTGAG 3 cut(s) 160, 1284, 1748
BpuMI CCSGG 1 cut(s) 307
Bsa29I ATCGAT 1 cut(s) 1326
BsaHI GRCGYC 1 cut(s) 163
BsaWI WCCGGW 2 cut(s) 781, 3087
Bsc4I CCNNNNNNNGG 8 cut(s) 237, 327, 781, 788, 1132, 1240, 2297, 3546
Bse118I RCCGGY 1 cut(s) 3087
Bse1I ACTGG 5 cut(s) 341, 633, 1876, 2184, 2890
Bse21I CCTNAGG 1 cut(s) 810
Bse3DI GCAATG 2 cut(s) 1208, 2859
BseBI CCWGG 7 cut(s) 252, 324, 1976, 2254, 2292, 2720, 2764
BseCI ATCGAT 1 cut(s) 1326
BseLI CCNNNNNNNGG 8 cut(s) 237, 327, 781, 788, 1132, 1240, 2297, 3546
BseMI GCAATG 2 cut(s) 1208, 2859
BseNI ACTGG 5 cut(s) 341, 633, 1876, 2184, 2890
BseRI GAGGAG 3 cut(s) 140, 1460, 3158
BseSI GKGCMC 2 cut(s) 2844, 2872
BsgI GTGCAG 2 cut(s) 2267, 3283
BshFI GGCC 5 cut(s) 310, 965, 1348, 2154, 2265
BshNI GGYRCC 1 cut(s) 2867
BshTI ACCGGT 1 cut(s) 3087
BshVI ATCGAT 1 cut(s) 1326
BsiHKAI GWGCWC 4 cut(s) 185, 1823, 2844, 3211
BsiSI CCGG 3 cut(s) 307, 782, 3088
BslFI GGGAC 5 cut(s) 150, 1889, 2026, 3440, 3485
BslI CCNNNNNNNGG 8 cut(s) 237, 327, 781, 788, 1132, 1240, 2297, 3546
BsmAI GTCTC 3 cut(s) 657, 1383, 1583
BsmFI GGGAC 5 cut(s) 150, 1889, 2026, 3440, 3485
BsmI GAATGC 1 cut(s) 132
BsnI GGCC 5 cut(s) 310, 965, 1348, 2154, 2265
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 6 cut(s) 185, 872, 1823, 2844, 2872, 3211
Bsp1407I TGTACA 1 cut(s) 1504
Bsp143I GATC 8 cut(s) 42, 595, 735, 972, 1462, 2472, 2888, 3512
Bsp1720I GCTNAGC 1 cut(s) 1197
Bsp19I CCATGG 1 cut(s) 966
BspACI CCGC 5 cut(s) 835, 924, 1028, 1679, 3540
BspANI GGCC 5 cut(s) 310, 965, 1348, 2154, 2265
BspDI ATCGAT 1 cut(s) 1326
BspHI TCATGA 4 cut(s) 424, 1459, 1626, 3581
BspLI GGNNCC 6 cut(s) 939, 2014, 2869, 3219, 3428, 3473
BspMAI CTGCAG 1 cut(s) 3199
BspMI ACCTGC 3 cut(s) 189, 2024, 2289
BspOI GCTAGC 1 cut(s) 1100
BspPI GGATC 3 cut(s) 2480, 2896, 3520
BspQI GCTCTTC 2 cut(s) 86, 860
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 2867
BspTI CTTAAG 2 cut(s) 53, 3257
BsrDI GCAATG 2 cut(s) 1208, 2859
BsrFI RCCGGY 1 cut(s) 3087
BsrGI TGTACA 1 cut(s) 1504
BsrI ACTGG 5 cut(s) 341, 633, 1876, 2184, 2890
BssAI RCCGGY 1 cut(s) 3087
BssMI GATC 8 cut(s) 42, 595, 735, 972, 1462, 2472, 2888, 3512
BssNAI GTATAC 1 cut(s) 3290
BssNI GRCGYC 1 cut(s) 163
BssSI CACGAG 1 cut(s) 2843
BssT1I CCWWGG 7 cut(s) 830, 966, 1158, 1419, 1575, 2020, 3408
Bst1107I GTATAC 1 cut(s) 3290
Bst2BI CACGAG 1 cut(s) 2843
Bst2UI CCWGG 7 cut(s) 252, 324, 1976, 2254, 2292, 2720, 2764
Bst6I CTCTTC 3 cut(s) 86, 808, 860
BstACI GRCGYC 1 cut(s) 163
BstAFI CTTAAG 2 cut(s) 53, 3257
BstAPI GCANNNNNTGC 3 cut(s) 701, 710, 2858
BstAUI TGTACA 1 cut(s) 1504
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 9 cut(s) 624, 1098, 1677, 1743, 2412, 2685, 2697, 2824, 2859
BstDSI CCRYGG 2 cut(s) 764, 966
BstH2I RGCGCY 1 cut(s) 676
BstHHI GCGC 2 cut(s) 675, 2095
BstKTI GATC 8 cut(s) 45, 598, 738, 975, 1465, 2475, 2891, 3515
BstMAI GTCTC 3 cut(s) 657, 1383, 1583
BstMBI GATC 8 cut(s) 42, 595, 735, 972, 1462, 2472, 2888, 3512
BstNI CCWGG 7 cut(s) 252, 324, 1976, 2254, 2292, 2720, 2764
BstNSI RCATGY 1 cut(s) 1741
BstSCI CCNGG 8 cut(s) 250, 305, 322, 1974, 2252, 2290, 2718, 2762
BstSFI CTRYAG 3 cut(s) 558, 873, 3195
BstSLI GKGCMC 2 cut(s) 2844, 2872
BstV2I GAAGAC 1 cut(s) 2477
BstX2I RGATCY 2 cut(s) 2888, 3512
BstXI CCANNNNNNTGG 2 cut(s) 437, 3348
BstYI RGATCY 2 cut(s) 2888, 3512
BstZ17I GTATAC 1 cut(s) 3290
Bsu15I ATCGAT 1 cut(s) 1326
Bsu36I CCTNAGG 1 cut(s) 810
BsuI GTATCC 1 cut(s) 276
BsuRI GGCC 5 cut(s) 310, 965, 1348, 2154, 2265
BsuTUI ATCGAT 1 cut(s) 1326
BtgI CCRYGG 2 cut(s) 764, 966
BtsI GCAGTG 2 cut(s) 2749, 3180
BtsIMutI CAGTG 7 cut(s) 203, 334, 640, 1349, 2749, 3180, 3461
BveI ACCTGC 3 cut(s) 189, 2024, 2289
Cac8I GCNNGC 9 cut(s) 624, 1098, 1677, 1743, 2412, 2685, 2697, 2824, 2859
CciI TCATGA 4 cut(s) 424, 1459, 1626, 3581
CfoI GCGC 2 cut(s) 675, 2095
Cfr10I RCCGGY 1 cut(s) 3087
Cfr13I GGNCC 7 cut(s) 2013, 2153, 2182, 2766, 3217, 3427, 3472
ClaI ATCGAT 1 cut(s) 1326
CseI GACGC 3 cut(s) 152, 695, 1254
CsiI ACCWGGT 1 cut(s) 2762
Csp6I GTAC 6 cut(s) 1020, 1505, 2177, 2278, 2505, 2905
CspAI ACCGGT 1 cut(s) 3087
CspCI CAANNNNNGTGG 4 cut(s) 838, 873, 2319, 2354
CviQI GTAC 6 cut(s) 1020, 1505, 2177, 2278, 2505, 2905
DpnI GATC 8 cut(s) 44, 597, 737, 974, 1464, 2474, 2890, 3514
DpnII GATC 8 cut(s) 42, 595, 735, 972, 1462, 2472, 2888, 3512
DraI TTTAAA 1 cut(s) 1228
DraIII CACNNNGTG 1 cut(s) 209
DrdI GACNNNNNNGTC 2 cut(s) 1264, 3092
DseDI GACNNNNNNGTC 2 cut(s) 1264, 3092
EaeI YGGCCR 3 cut(s) 308, 963, 2263
Eam1104I CTCTTC 3 cut(s) 86, 808, 860
EarI CTCTTC 3 cut(s) 86, 808, 860
EciI GGCGGA 1 cut(s) 850
Ecl136II GAGCTC 1 cut(s) 1821
Eco130I CCWWGG 7 cut(s) 830, 966, 1158, 1419, 1575, 2020, 3408
Eco24I GRGCYC 2 cut(s) 872, 1823
Eco32I GATATC 1 cut(s) 1452
Eco47I GGWCC 6 cut(s) 2013, 2182, 2766, 3217, 3427, 3472
Eco47III AGCGCT 1 cut(s) 674
Eco53kI GAGCTC 1 cut(s) 1821
Eco81I CCTNAGG 1 cut(s) 810
EcoICRI GAGCTC 1 cut(s) 1821
EcoO109I RGGNCCY 3 cut(s) 2013, 3427, 3472
EcoRI GAATTC 2 cut(s) 1483, 3307
EcoRII CCWGG 7 cut(s) 250, 322, 1974, 2252, 2290, 2718, 2762
EcoRV GATATC 1 cut(s) 1452
EcoT14I CCWWGG 7 cut(s) 830, 966, 1158, 1419, 1575, 2020, 3408
EcoT38I GRGCYC 2 cut(s) 872, 1823
ErhI CCWWGG 7 cut(s) 830, 966, 1158, 1419, 1575, 2020, 3408
FalI AAGNNNNNCTT 6 cut(s) 1142, 1174, 1530, 1562, 2841, 2873
FaqI GGGAC 5 cut(s) 150, 1889, 2026, 3440, 3485
FbaI TGATCA 2 cut(s) 42, 595
FblI GTMKAC 2 cut(s) 1971, 3289
FriOI GRGCYC 2 cut(s) 872, 1823
FspBI CTAG 9 cut(s) 123, 900, 1097, 1925, 2021, 2499, 2523, 2645, 3072
GlaI GCGC 2 cut(s) 674, 2094
GsuI CTGGAG 1 cut(s) 2702
HaeII RGCGCY 1 cut(s) 676
HaeIII GGCC 5 cut(s) 310, 965, 1348, 2154, 2265
HapII CCGG 3 cut(s) 307, 782, 3088
HgaI GACGC 3 cut(s) 152, 695, 1254
HhaI GCGC 2 cut(s) 675, 2095
Hin1I GRCGYC 1 cut(s) 163
Hin6I GCGC 2 cut(s) 673, 2093
HinP1I GCGC 2 cut(s) 673, 2093
HincII GTYRAC 2 cut(s) 478, 1416
HindII GTYRAC 2 cut(s) 478, 1416
HindIII AAGCTT 3 cut(s) 56, 2408, 3276
HpaII CCGG 3 cut(s) 307, 782, 3088
HphI GGTGA 6 cut(s) 308, 798, 1492, 2057, 3005, 3512
Hpy166II GTNNAC 6 cut(s) 478, 884, 1416, 1972, 2842, 3290
Hpy8I GTNNAC 6 cut(s) 478, 884, 1416, 1972, 2842, 3290
Hpy99I CGWCG 2 cut(s) 284, 512
HpyAV CCTTC 7 cut(s) 34, 1073, 1085, 2144, 2336, 2430, 2918
HpyCH4IV ACGT 4 cut(s) 387, 489, 1189, 1897
HpySE526I ACGT 4 cut(s) 387, 489, 1189, 1897
Hsp92I GRCGYC 1 cut(s) 163
HspAI GCGC 2 cut(s) 673, 2093
Ksp22I TGATCA 2 cut(s) 42, 595
Kzo9I GATC 8 cut(s) 42, 595, 735, 972, 1462, 2472, 2888, 3512
LguI GCTCTTC 2 cut(s) 86, 860
LmnI GCTCC 8 cut(s) 180, 253, 943, 1818, 1826, 2374, 3376, 3567
MabI ACCWGGT 1 cut(s) 2762
MaeI CTAG 9 cut(s) 123, 900, 1097, 1925, 2021, 2499, 2523, 2645, 3072
MaeII ACGT 4 cut(s) 387, 489, 1189, 1897
MaeIII GTNAC 3 cut(s) 201, 296, 1177
MalI GATC 8 cut(s) 44, 597, 737, 974, 1464, 2474, 2890, 3514
MboI GATC 8 cut(s) 42, 595, 735, 972, 1462, 2472, 2888, 3512
MfeI CAATTG 2 cut(s) 1116, 1701
MflI RGATCY 2 cut(s) 2888, 3512
MhlI GDGCHC 6 cut(s) 185, 872, 1823, 2844, 2872, 3211
MlsI TGGCCA 1 cut(s) 965
MluNI TGGCCA 1 cut(s) 965
MlyI GAGTC 6 cut(s) 638, 1040, 1871, 2635, 2644, 3544
MmeI TCCRAC 1 cut(s) 2331
Mox20I TGGCCA 1 cut(s) 965
MroXI GAANNNNTTC 2 cut(s) 225, 2484
MscI TGGCCA 1 cut(s) 965
MseI TTAA 8 cut(s) 54, 1227, 1371, 2361, 2580, 2811, 3258, 3303
MslI CAYNNNNRTG 7 cut(s) 294, 429, 435, 536, 603, 1631, 3387
Msp20I TGGCCA 1 cut(s) 965
MspA1I CMGCKG 3 cut(s) 692, 1499, 3397
MspCI CTTAAG 2 cut(s) 53, 3257
MspI CCGG 3 cut(s) 307, 782, 3088
MspR9I CCNGG 8 cut(s) 252, 307, 324, 1976, 2254, 2292, 2720, 2764
MunI CAATTG 2 cut(s) 1116, 1701
Mva1269I GAATGC 1 cut(s) 132
MvaI CCWGG 7 cut(s) 252, 324, 1976, 2254, 2292, 2720, 2764
NciI CCSGG 1 cut(s) 307
NcoI CCATGG 1 cut(s) 966
NdeII GATC 8 cut(s) 42, 595, 735, 972, 1462, 2472, 2888, 3512
NheI GCTAGC 1 cut(s) 1096
NlaIV GGNNCC 6 cut(s) 939, 2014, 2869, 3219, 3428, 3473
NmeAIII GCCGAG 1 cut(s) 2440
NmuCI GTSAC 2 cut(s) 201, 296
NspI RCATGY 1 cut(s) 1741
NspV TTCGAA 1 cut(s) 84
PagI TCATGA 4 cut(s) 424, 1459, 1626, 3581
PciSI GCTCTTC 2 cut(s) 86, 860
PctI GAATGC 1 cut(s) 132
PdmI GAANNNNTTC 2 cut(s) 225, 2484
PfeI GAWTC 6 cut(s) 353, 377, 643, 1121, 2519, 2546
PinAI ACCGGT 1 cut(s) 3087
PleI GAGTC 6 cut(s) 637, 1039, 1871, 2635, 2643, 3544
PpsI GAGTC 6 cut(s) 637, 1039, 1871, 2635, 2643, 3544
PpuMI RGGWCCY 3 cut(s) 2013, 3427, 3472
PsiI TTATAA 2 cut(s) 2406, 2726
Psp124BI GAGCTC 1 cut(s) 1823
Psp1406I AACGTT 1 cut(s) 387
Psp5II RGGWCCY 3 cut(s) 2013, 3427, 3472
Psp6I CCWGG 7 cut(s) 250, 322, 1974, 2252, 2290, 2718, 2762
PspGI CCWGG 7 cut(s) 250, 322, 1974, 2252, 2290, 2718, 2762
PspN4I GGNNCC 6 cut(s) 939, 2014, 2869, 3219, 3428, 3473
PspPI GGNCC 7 cut(s) 2013, 2153, 2182, 2766, 3217, 3427, 3472
PspPPI RGGWCCY 3 cut(s) 2013, 3427, 3472
PstI CTGCAG 1 cut(s) 3199
PsuI RGATCY 2 cut(s) 2888, 3512
PvuII CAGCTG 3 cut(s) 692, 1499, 3397
RsaI GTAC 6 cut(s) 1021, 1506, 2178, 2279, 2506, 2906
RsaNI GTAC 6 cut(s) 1020, 1505, 2177, 2278, 2505, 2905
RseI CAYNNNNRTG 7 cut(s) 294, 429, 435, 536, 603, 1631, 3387
SacI GAGCTC 1 cut(s) 1823
SapI GCTCTTC 2 cut(s) 86, 860
SaqAI TTAA 8 cut(s) 54, 1227, 1371, 2361, 2580, 2811, 3258, 3303
Sau3AI GATC 8 cut(s) 42, 595, 735, 972, 1462, 2472, 2888, 3512
Sau96I GGNCC 7 cut(s) 2013, 2153, 2182, 2766, 3217, 3427, 3472
ScaI AGTACT 1 cut(s) 2178
SchI GAGTC 6 cut(s) 638, 1040, 1871, 2635, 2644, 3544
ScrFI CCNGG 8 cut(s) 252, 307, 324, 1976, 2254, 2292, 2720, 2764
SduI GDGCHC 6 cut(s) 185, 872, 1823, 2844, 2872, 3211
SexAI ACCWGGT 1 cut(s) 2762
SfcI CTRYAG 3 cut(s) 558, 873, 3195
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 6 cut(s) 2013, 2182, 2766, 3217, 3427, 3472
SmiMI CAYNNNNRTG 7 cut(s) 294, 429, 435, 536, 603, 1631, 3387
SmlI CTYRAG 5 cut(s) 53, 175, 1299, 1727, 3257
SmoI CTYRAG 5 cut(s) 53, 175, 1299, 1727, 3257
SsiI CCGC 5 cut(s) 835, 924, 1028, 1679, 3540
SspI AATATT 1 cut(s) 2578
SspMI CTAG 9 cut(s) 123, 900, 1097, 1925, 2021, 2499, 2523, 2645, 3072
SstI GAGCTC 1 cut(s) 1823
StyD4I CCNGG 8 cut(s) 250, 305, 322, 1974, 2252, 2290, 2718, 2762
StyI CCWWGG 7 cut(s) 830, 966, 1158, 1419, 1575, 2020, 3408
TaiI ACGT 4 cut(s) 390, 492, 1192, 1900
TaqI TCGA 8 cut(s) 84, 507, 669, 1326, 1655, 1809, 2952, 3360
TatI WGTACW 2 cut(s) 1504, 2176
TauI GCSGC 2 cut(s) 926, 1682
TfiI GAWTC 6 cut(s) 353, 377, 643, 1121, 2519, 2546
Tru1I TTAA 8 cut(s) 54, 1227, 1371, 2361, 2580, 2811, 3258, 3303
Tru9I TTAA 8 cut(s) 54, 1227, 1371, 2361, 2580, 2811, 3258, 3303
TscAI CASTG 7 cut(s) 210, 341, 640, 1349, 2749, 3180, 3468
TseFI GTSAC 2 cut(s) 201, 296
Tsp45I GTSAC 2 cut(s) 201, 296
TspGWI ACGGA 2 cut(s) 753, 1532
TspRI CASTG 7 cut(s) 210, 341, 640, 1349, 2749, 3180, 3468
Vha464I CTTAAG 2 cut(s) 53, 3257
VneI GTGCAC 1 cut(s) 2840
VpaK11BI GGWCC 6 cut(s) 2013, 2182, 2766, 3217, 3427, 3472
XapI RAATTY 4 cut(s) 1483, 2947, 3148, 3307
XbaI TCTAGA 2 cut(s) 2522, 2644
XceI RCATGY 1 cut(s) 1741
XcmI CCANNNNNNNNNTGG 1 cut(s) 1463
XmaJI CCTAGG 1 cut(s) 2020
XmiI GTMKAC 2 cut(s) 1971, 3289
XmnI GAANNNNTTC 2 cut(s) 225, 2484
XspI CTAG 9 cut(s) 123, 900, 1097, 1925, 2021, 2499, 2523, 2645, 3072
ZrmI AGTACT 1 cut(s) 2178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.