Rw3G009560

HEAT-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003507
Physical Location & Seq
Forward (+)
9161678 .. 9164815
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G009560.1

Sequence Viewer

Length: 2553 bp
ATGTCCCTTTTGGTGATTTCCTTTGTGGCATTGTGGAGAGAAATGGCCATGGAGATCACTCAGTATCTATTGTCAGCTCAATCAGCCGATGCAAGAGTTCGTACTGAAGCAGAATCTAATCTGAGGAAATTTCAAGAGCAAAACCTACCTGCTTTCCTTCTGTTGTTGTCGGTTGAGCTAGCAAACAATGAAAAGCCAGTTGAATCCCGAAGGTTGGCTGGTATTGTTCTTAAGAACTTACTAGATGTCAAAGATTCTGCAACAAAGAAACATCTTGCTCAGCAATGGATGGATATTGATATTGCATTTAAATCCCAAATCAAGAGCTGGCTCTTACAGACACTTGGGTCATCTAAACAGTGGCCTGAGCTAATCGGACATTTGCTTAATAACATGATTCAGCGCGATAGCTCTGCTGATTTGAAACAGTCAACCTTGGAAACTCTTGGTTATGTATGCGAGGAAATATCCCATCCTGATCTTCAGCAAGATGAGGTAAACTCTGTTCTTACAGCTGTAATTCAAGGAATGAATCTTGCTGAGAACAGTTCTGAAGTCCGTCTTGCTGCAACAAGGGCATTATGTAATGCCTTGGAGTTTGCTCAGACAAACTTTGAAAATGAGATGGAACGAACTTACATCATGAAGATGATCTGTGAGACTGCCTTATCTAAAGAGGTAGAGGTTAGGCAGGCTGCTTTTGAGTGCCTTGCCTCAATTGCTTCTACATACTATTCTGTGCTTGGGACTTACATGCAGGCTCTCTTTGAGCTTACATCAAATGCGGTAAAAGGGGATGTAGAACCTGTTGCCCTTCAAGCAATTGAGTTCTGGAGTTCCATTTGTGAAAAAGAAACAGAATTGCAAAAGTATGAGACAGCTGACAGGAACTGTTGGGACTCTTTACCGGACTTTGTGCCTCCTCATTCACGTTTTATAGAAAAATCTCGAATTTCTCTAATTCCAATATTGCTAGAGACTTTGCTAATGCAGGAAGAAAATGTAAGCCAGGATGACAACATTTGGAATATCTCAATGGCTGGGAAGAAATGCCTAGAACTTGTTGCCCAAACTGTTGGGTTTGTCATTGTACCGCTTGTGATTCCATTTGTGGTGGCTAACAGAGTGAAACCAGATTGGCATTGTCGGGAGGCAGCAGTTTTTGCACTTGGTGCAATTATTGAAGGCTCAACCATCTACCAGGATCTTGGGGTCTTATTAAAATACTGTGAACTGGTCCGTGAACTTATAGATGACTTGCTTTTCTTAATGAATGATGAAAACAACCAAGTCAAAGAAACTACTGCATGGACTCTCGGTCGTATATTTGAATTTTTGCATAGTCCTGTTGGTGGATTTTCTGTGATTACTTCCGATAATCTTCCAATAGTGGTAGATATATTGGTGAAGAGCATTAGTGATGCTCCAAATGTTGCAACTAAGGTGTGTCGGGCGATTTATACACTTGCTGAGGGCTATGAGGAAGCTGGAATGCATTCATCTTTTTTTATGCCATATATCCCTAGGATCATTGAAAGTCTTCTTTTTGCTGCTAGTCGTGCAGATGTGGATGATTCGAAATTGAGGTCTGCTGCATATGAATCATTAAACGAGGTAGTGAAGTGTTCCAGCAGTACCGAAACACCACAGATTATAAGAGAATTACTCTCTGTGATTTTGGAGAGGTTGGGTCAGACTTTAGAGCTTCAGATTGTATCATCAGATGGCAAGGAAAAGCAAGCAGACTTGCAGGCTTCTCTTTGTGGAGTTCTCCAGGTTATAATCGAGAAAGTTAGCAGTGCCGATGATTTAGAAACCAGGTCCATTATGTTGACACAGGCAGACCAGATAATTTCTACAGTGCATGAGGAAGCCATGCTTGCTATTGGTGCCCTTGCTCATGCTACTGGGTCTGAGTTTGGCAAGTACCTTCCTGAATTATACAAGTACTTGAAGAGGGGGTTGCAAAATTTCAAGGACTATCAAGCCTGTTCTGTCACAGTTGGTGTGGTTGGCGACATTGCTCGTGCCTTGAAGTACAAGGTAGTACCATATTGTGATGGGATTATGCAAATTCTGTTGACGAATCTTTCTAGTGAAGCACTCGACCGGTCTGTCAAGCCTCCCATATTCTCTGTCATTGGCGACATAGCTCTCTCAATAGATGAAAACTTTCAGAAGTATGTTGACTCTGCAGTGCCAATGATGCAGAGAGCTGCGGAGCTGTGTGCTCAGATGGACTCCAATGATGATGAGTTATTGGAGTACGGCAGTCAGCTCAAGTGTAGCATCTTTGAAGCTTATTCTGGTATACTTCGGGGCACCAAGAAGTCTAAGATCATGATGCCATATGCCCAGCTTCTCTACGAGTTTATAGGATTTGTTTTGAAGGAGAAAGACAGGGATATGCTTCTAAGAAAAGCTTTAGCTGCTGTGATGGATGACCTTGCAGATTTACTTGGTACAAACACAAAGACACTCTTTGGAGACCTTACTGCTCGTGTAACATATACTGGTGCGTGTCTTCAATCTGATGGTGATAACCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

850

Amino Acids

94.8

Weight (kDa)

4.77

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 37 - 117 1.3e-08 Importin-beta N-terminal domain
HEAT_EZ PF13513 380 - 442 1.8e-06 HEAT-like repeat
TPR_IMB1 PF25574 464 - 822 1.4e-87 Importin subunit beta-1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1655, 1781
AasI GACNNNNNNGTC 2 cut(s) 346, 2114
Acc36I ACCTGC 1 cut(s) 157
AccB1I GGYRCC 2 cut(s) 1889, 2321
AccI GTMKAC 1 cut(s) 2311
AccII CGCG 1 cut(s) 405
AciI CCGC 3 cut(s) 785, 1094, 2219
AclWI GGATC 2 cut(s) 1212, 1535
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 5 cut(s) 128, 951, 1331, 1969, 2073
AcuI CTGAAG 4 cut(s) 126, 467, 573, 1691
AdeI CACNNNGTG 1 cut(s) 1172
AfaI GTAC 9 cut(s) 103, 1092, 1636, 1928, 1949, 2039, 2049, 2267, 2464
AfiI CCNNNNNNNGG 2 cut(s) 214, 1352
AflII CTTAAG 1 cut(s) 230
AgeI ACCGGT 1 cut(s) 2109
AhdI GACNNNNNGTC 1 cut(s) 1317
AjnI CCWGG 4 cut(s) 1008, 1200, 1773, 1817
Alw21I GWGCWC 1 cut(s) 2233
Alw26I GTCTC 4 cut(s) 653, 869, 971, 2481
AlwI GGATC 2 cut(s) 1212, 1535
AlwNI CAGNNNCTG 1 cut(s) 891
AoxI GGCC 2 cut(s) 45, 362
ApeKI GCWGC 7 cut(s) 566, 695, 1154, 1550, 1592, 2216, 2429
ApoI RAATTY 5 cut(s) 128, 951, 1331, 1969, 2073
ArsI GACNNNNNNTTYG 2 cut(s) 1571, 1603
AsiGI ACCGGT 1 cut(s) 2109
Asp700I GAANNNNTTC 3 cut(s) 1495, 1539, 2172
AspA2I CCTAGG 1 cut(s) 1523
AspLEI GCGC 1 cut(s) 405
AspS9I GGNCC 2 cut(s) 1237, 1821
AsuHPI GGTGA 3 cut(s) 25, 1417, 2549
AsuII TTCGAA 1 cut(s) 1577
AsuNHI GCTAGC 1 cut(s) 178
AvaII GGWCC 2 cut(s) 1237, 1821
AvrII CCTAGG 1 cut(s) 1523
BaeGI GKGCMC 2 cut(s) 1894, 2324
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 2 cut(s) 1889, 2321
BauI CACGAG 2 cut(s) 2025, 2499
BbsI GAAGAC 2 cut(s) 1532, 2516
Bbv12I GWGCWC 1 cut(s) 2233
BbvCI CCTCAGC 1 cut(s) 1470
BbvI GCAGC 7 cut(s) 553, 682, 1166, 1537, 1579, 2203, 2416
BccI CCATC 9 cut(s) 283, 480, 619, 1202, 1718, 2054, 2230, 2431, 2528
BceAI ACGGC 1 cut(s) 2284
BcgI CGANNNNNNTGC 2 cut(s) 395, 429
BciT130I CCWGG 4 cut(s) 1010, 1202, 1775, 1819
BcoDI GTCTC 4 cut(s) 653, 869, 971, 2481
BfaI CTAG 7 cut(s) 179, 242, 974, 1055, 1524, 1554, 2094
BfmI CTRYAG 2 cut(s) 1857, 2193
BfrI CTTAAG 1 cut(s) 230
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 7 cut(s) 567, 696, 1155, 1551, 1593, 2217, 2430
BlnI CCTAGG 1 cut(s) 1523
BlpI GCTNAGC 1 cut(s) 279
BlsI GCNGC 7 cut(s) 568, 697, 1156, 1552, 1594, 2218, 2431
BmcAI AGTACT 1 cut(s) 1949
Bme1390I CCNGG 4 cut(s) 1010, 1202, 1775, 1819
Bme18I GGWCC 2 cut(s) 1237, 1821
BmeRI GACNNNNNGTC 1 cut(s) 1317
BmgT120I GGNCC 2 cut(s) 1237, 1821
BmiI GGNNCC 2 cut(s) 1891, 2323
BmrFI CCNGG 4 cut(s) 1010, 1202, 1775, 1819
BmrI ACTGGG 1 cut(s) 1917
BmsI GCATC 5 cut(s) 79, 1411, 2196, 2298, 2334
BmtI GCTAGC 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 1917
BpiI GAAGAC 2 cut(s) 1532, 2516
BplI GAGNNNNNCTC 4 cut(s) 485, 517, 1650, 1682
BpmI CTGGAG 2 cut(s) 853, 1757
Bpu10I CCTNAGC 2 cut(s) 366, 1470
Bpu1102I GCTNAGC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 1577
BpuEI CTTGAG 1 cut(s) 2264
BsaI GGTCTC 1 cut(s) 2481
BsaJI CCNNGG 4 cut(s) 48, 435, 591, 1523
BsaWI WCCGGW 2 cut(s) 907, 2109
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 1352
Bse118I RCCGGY 1 cut(s) 2109
Bse1I ACTGG 4 cut(s) 197, 1239, 1912, 2518
Bse3DI GCAATG 2 cut(s) 290, 2019
BseBI CCWGG 4 cut(s) 1010, 1202, 1775, 1819
BseDI CCNNGG 4 cut(s) 48, 435, 591, 1523
BseGI GGATG 6 cut(s) 294, 472, 802, 1018, 1576, 2446
BseLI CCNNNNNNNGG 2 cut(s) 214, 1352
BseMI GCAATG 2 cut(s) 290, 2019
BseMII CTCAG 9 cut(s) 74, 113, 293, 357, 531, 617, 1461, 1905, 2246
BseNI ACTGG 4 cut(s) 197, 1239, 1912, 2518
BseRI GAGGAG 1 cut(s) 912
BseSI GKGCMC 2 cut(s) 1894, 2324
BseXI GCAGC 7 cut(s) 553, 682, 1166, 1537, 1579, 2203, 2416
BseYI CCCAGC 2 cut(s) 1040, 2355
BsgI GTGCAG 1 cut(s) 1581
Bsh1236I CGCG 1 cut(s) 405
Bsh1285I CGRYCG 2 cut(s) 1321, 2110
BshFI GGCC 2 cut(s) 47, 364
BshNI GGYRCC 2 cut(s) 1889, 2321
BshTI ACCGGT 1 cut(s) 2109
BsiEI CGRYCG 2 cut(s) 1321, 2110
BsiHKAI GWGCWC 1 cut(s) 2233
BsiSI CCGG 2 cut(s) 908, 2110
BslFI GGGAC 2 cut(s) 760, 911
BslI CCNNNNNNNGG 2 cut(s) 214, 1352
BsmAI GTCTC 4 cut(s) 653, 869, 971, 2481
BsmFI GGGAC 2 cut(s) 760, 911
BsmI GAATGC 2 cut(s) 1495, 1497
BsnI GGCC 2 cut(s) 47, 364
Bso31I GGTCTC 1 cut(s) 2481
Bsp119I TTCGAA 1 cut(s) 1577
Bsp1286I GDGCHC 3 cut(s) 1894, 2233, 2324
Bsp143I GATC 6 cut(s) 54, 478, 651, 1204, 1527, 2337
Bsp1720I GCTNAGC 1 cut(s) 279
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 3 cut(s) 785, 1094, 2219
BspANI GGCC 2 cut(s) 47, 364
BspCNI CTCAG 9 cut(s) 73, 114, 292, 358, 532, 616, 1462, 1906, 2245
BspFNI CGCG 1 cut(s) 405
BspHI TCATGA 2 cut(s) 642, 2340
BspLI GGNNCC 2 cut(s) 1891, 2323
BspMAI CTGCAG 1 cut(s) 2197
BspMI ACCTGC 1 cut(s) 157
BspOI GCTAGC 1 cut(s) 182
BspPI GGATC 2 cut(s) 1212, 1535
BspQI GCTCTTC 1 cut(s) 1403
BspT104I TTCGAA 1 cut(s) 1577
BspT107I GGYRCC 2 cut(s) 1889, 2321
BspTI CTTAAG 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 2481
BsrDI GCAATG 2 cut(s) 290, 2019
BsrFI RCCGGY 1 cut(s) 2109
BsrI ACTGG 4 cut(s) 197, 1239, 1912, 2518
BssAI RCCGGY 1 cut(s) 2109
BssECI CCNNGG 4 cut(s) 48, 435, 591, 1523
BssMI GATC 6 cut(s) 54, 478, 651, 1204, 1527, 2337
BssNAI GTATAC 1 cut(s) 2312
BssSI CACGAG 2 cut(s) 2025, 2499
BssT1I CCWWGG 4 cut(s) 48, 435, 591, 1523
Bst1107I GTATAC 1 cut(s) 2312
Bst2BI CACGAG 2 cut(s) 2025, 2499
Bst2UI CCWGG 4 cut(s) 1010, 1202, 1775, 1819
Bst4CI ACNGT 8 cut(s) 360, 429, 548, 893, 1075, 1229, 1861, 2002
Bst6I CTCTTC 2 cut(s) 1403, 1949
BstAFI CTTAAG 1 cut(s) 230
BstAPI GCANNNNNTGC 2 cut(s) 1163, 1172
BstBI TTCGAA 1 cut(s) 1577
BstC8I GCNNGC 7 cut(s) 180, 329, 693, 759, 1740, 1752, 1881
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 6 cut(s) 294, 472, 802, 1018, 1576, 2446
BstFNI CGCG 1 cut(s) 405
BstHHI GCGC 1 cut(s) 405
BstKTI GATC 6 cut(s) 57, 481, 654, 1207, 1530, 2340
BstMAI GTCTC 4 cut(s) 653, 869, 971, 2481
BstMBI GATC 6 cut(s) 54, 478, 651, 1204, 1527, 2337
BstMCI CGRYCG 2 cut(s) 1321, 2110
BstNI CCWGG 4 cut(s) 1010, 1202, 1775, 1819
BstNSI RCATGY 1 cut(s) 757
BstSCI CCNGG 4 cut(s) 1008, 1200, 1773, 1817
BstSFI CTRYAG 2 cut(s) 1857, 2193
BstSLI GKGCMC 2 cut(s) 1894, 2324
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 7 cut(s) 553, 682, 1166, 1537, 1579, 2203, 2416
BstV2I GAAGAC 2 cut(s) 1532, 2516
BstX2I RGATCY 1 cut(s) 1204
BstXI CCANNNNNNTGG 2 cut(s) 1076, 1208
BstYI RGATCY 1 cut(s) 1204
BstZ17I GTATAC 1 cut(s) 2312
BsuRI GGCC 2 cut(s) 47, 364
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 6 cut(s) 294, 472, 802, 1018, 1576, 2446
BtsI GCAGTG 2 cut(s) 1804, 2202
BtsIMutI CAGTG 4 cut(s) 365, 1804, 1866, 2202
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 7 cut(s) 180, 329, 693, 759, 1740, 1752, 1881
CaiI CAGNNNCTG 1 cut(s) 891
CciI TCATGA 2 cut(s) 642, 2340
CfoI GCGC 1 cut(s) 405
Cfr10I RCCGGY 1 cut(s) 2109
Cfr13I GGNCC 2 cut(s) 1237, 1821
CsiI ACCWGGT 1 cut(s) 1817
Csp6I GTAC 9 cut(s) 102, 1091, 1635, 1927, 1948, 2038, 2048, 2266, 2463
CspAI ACCGGT 1 cut(s) 2109
CviAII CATG 9 cut(s) 49, 394, 643, 754, 1308, 1865, 1876, 1901, 2341
CviQI GTAC 9 cut(s) 102, 1091, 1635, 1927, 1948, 2038, 2048, 2266, 2463
DpnI GATC 6 cut(s) 56, 480, 653, 1206, 1529, 2339
DpnII GATC 6 cut(s) 54, 478, 651, 1204, 1527, 2337
DraI TTTAAA 1 cut(s) 310
DraIII CACNNNGTG 1 cut(s) 1172
DrdI GACNNNNNNGTC 2 cut(s) 346, 2114
DriI GACNNNNNGTC 1 cut(s) 1317
DseDI GACNNNNNNGTC 2 cut(s) 346, 2114
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 1403, 1949
Eam1105I GACNNNNNGTC 1 cut(s) 1317
EarI CTCTTC 2 cut(s) 1403, 1949
Eco130I CCWWGG 4 cut(s) 48, 435, 591, 1523
Eco31I GGTCTC 1 cut(s) 2481
Eco47I GGWCC 2 cut(s) 1237, 1821
Eco57I CTGAAG 4 cut(s) 126, 467, 573, 1691
EcoRII CCWGG 4 cut(s) 1008, 1200, 1773, 1817
EcoT14I CCWWGG 4 cut(s) 48, 435, 591, 1523
EcoT22I ATGCAT 1 cut(s) 1497
ErhI CCWWGG 4 cut(s) 48, 435, 591, 1523
FaeI CATG 9 cut(s) 52, 397, 646, 757, 1311, 1868, 1879, 1904, 2344
FalI AAGNNNNNCTT 8 cut(s) 546, 578, 1863, 1895, 2407, 2439, 2465, 2497
FaqI GGGAC 2 cut(s) 760, 911
FatI CATG 9 cut(s) 48, 393, 642, 753, 1307, 1864, 1875, 1900, 2340
FauNDI CATATG 2 cut(s) 1597, 2350
FblI GTMKAC 1 cut(s) 2311
Fnu4HI GCNGC 7 cut(s) 567, 696, 1155, 1551, 1593, 2217, 2430
FokI GGATG 6 cut(s) 301, 459, 809, 1025, 1583, 2453
Fsp4HI GCNGC 7 cut(s) 567, 696, 1155, 1551, 1593, 2217, 2430
FspBI CTAG 7 cut(s) 179, 242, 974, 1055, 1524, 1554, 2094
GlaI GCGC 1 cut(s) 404
GluI GCNGC 7 cut(s) 567, 696, 1155, 1551, 1593, 2217, 2430
GsaI CCCAGC 2 cut(s) 1044, 2359
GsuI CTGGAG 2 cut(s) 853, 1757
HaeIII GGCC 2 cut(s) 47, 364
HapII CCGG 2 cut(s) 908, 2110
HhaI GCGC 1 cut(s) 405
Hin1II CATG 9 cut(s) 52, 397, 646, 757, 1311, 1868, 1879, 1904, 2344
Hin6I GCGC 1 cut(s) 403
HinP1I GCGC 1 cut(s) 403
HincII GTYRAC 4 cut(s) 432, 1833, 2082, 2188
HindII GTYRAC 4 cut(s) 432, 1833, 2082, 2188
HindIII AAGCTT 2 cut(s) 2298, 2421
HpaII CCGG 2 cut(s) 908, 2110
HphI GGTGA 3 cut(s) 25, 1417, 2549
Hpy166II GTNNAC 8 cut(s) 432, 499, 1232, 1244, 1833, 2082, 2188, 2312
Hpy8I GTNNAC 8 cut(s) 432, 499, 1232, 1244, 1833, 2082, 2188, 2312
HpyAV CCTTC 6 cut(s) 167, 204, 824, 1178, 1940, 2383
HpyCH4III ACNGT 8 cut(s) 360, 429, 548, 893, 1075, 1229, 1861, 2002
HpyCH4IV ACGT 1 cut(s) 931
HpySE526I ACGT 1 cut(s) 931
Hsp92II CATG 9 cut(s) 52, 397, 646, 757, 1311, 1868, 1879, 1904, 2344
HspAI GCGC 1 cut(s) 403
Kzo9I GATC 6 cut(s) 54, 478, 651, 1204, 1527, 2337
LguI GCTCTTC 1 cut(s) 1403
LmnI GCTCC 2 cut(s) 1429, 2221
Lsp1109I GCAGC 7 cut(s) 553, 682, 1166, 1537, 1579, 2203, 2416
LweI GCATC 5 cut(s) 79, 1411, 2196, 2298, 2334
MabI ACCWGGT 1 cut(s) 1817
MaeI CTAG 7 cut(s) 179, 242, 974, 1055, 1524, 1554, 2094
MaeII ACGT 1 cut(s) 931
MaeIII GTNAC 2 cut(s) 1996, 2503
MalI GATC 6 cut(s) 56, 480, 653, 1206, 1529, 2339
MboI GATC 6 cut(s) 54, 478, 651, 1204, 1527, 2337
MboII GAAGA 9 cut(s) 473, 658, 1007, 1057, 1373, 1420, 1532, 1966, 2516
MfeI CAATTG 2 cut(s) 717, 822
MflI RGATCY 1 cut(s) 1204
MhlI GDGCHC 3 cut(s) 1894, 2233, 2324
MlsI TGGCCA 1 cut(s) 47
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 4 cut(s) 893, 1306, 2183, 2234
Mox20I TGGCCA 1 cut(s) 47
Mph1103I ATGCAT 1 cut(s) 1497
MroXI GAANNNNTTC 3 cut(s) 1495, 1539, 2172
MscI TGGCCA 1 cut(s) 47
MseI TTAA 6 cut(s) 231, 309, 387, 1220, 1268, 1607
MslI CAYNNNNRTG 1 cut(s) 647
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 2 cut(s) 515, 881
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 2 cut(s) 908, 2110
MspR9I CCNGG 4 cut(s) 1010, 1202, 1775, 1819
MunI CAATTG 2 cut(s) 717, 822
Mva1269I GAATGC 2 cut(s) 1495, 1497
MvaI CCWGG 4 cut(s) 1010, 1202, 1775, 1819
MvnI CGCG 1 cut(s) 405
NcoI CCATGG 1 cut(s) 48
NdeI CATATG 2 cut(s) 1597, 2350
NdeII GATC 6 cut(s) 54, 478, 651, 1204, 1527, 2337
NheI GCTAGC 1 cut(s) 178
NlaIII CATG 9 cut(s) 52, 397, 646, 757, 1311, 1868, 1879, 1904, 2344
NlaIV GGNNCC 2 cut(s) 1891, 2323
NmuCI GTSAC 1 cut(s) 1996
NsiI ATGCAT 1 cut(s) 1497
NspI RCATGY 1 cut(s) 757
NspV TTCGAA 1 cut(s) 1577
PagI TCATGA 2 cut(s) 642, 2340
PciSI GCTCTTC 1 cut(s) 1403
PctI GAATGC 2 cut(s) 1495, 1497
PdmI GAANNNNTTC 3 cut(s) 1495, 1539, 2172
PfeI GAWTC 9 cut(s) 113, 203, 254, 397, 532, 1102, 1574, 1601, 2086
PinAI ACCGGT 1 cut(s) 2109
PkrI GCNGC 7 cut(s) 568, 697, 1156, 1552, 1594, 2218, 2431
PleI GAGTC 4 cut(s) 893, 1306, 2183, 2234
PpsI GAGTC 4 cut(s) 893, 1306, 2183, 2234
PsiI TTATAA 2 cut(s) 1655, 1781
Psp6I CCWGG 4 cut(s) 1008, 1200, 1773, 1817
PspFI CCCAGC 2 cut(s) 1040, 2355
PspGI CCWGG 4 cut(s) 1008, 1200, 1773, 1817
PspN4I GGNNCC 2 cut(s) 1891, 2323
PspPI GGNCC 2 cut(s) 1237, 1821
PsrI GAACNNNNNNTAC 2 cut(s) 489, 521
PstI CTGCAG 1 cut(s) 2197
PstNI CAGNNNCTG 1 cut(s) 891
PsuI RGATCY 1 cut(s) 1204
PvuII CAGCTG 2 cut(s) 515, 881
RsaI GTAC 9 cut(s) 103, 1092, 1636, 1928, 1949, 2039, 2049, 2267, 2464
RsaNI GTAC 9 cut(s) 102, 1091, 1635, 1927, 1948, 2038, 2048, 2266, 2463
RseI CAYNNNNRTG 1 cut(s) 647
SapI GCTCTTC 1 cut(s) 1403
SaqAI TTAA 6 cut(s) 231, 309, 387, 1220, 1268, 1607
SatI GCNGC 7 cut(s) 567, 696, 1155, 1551, 1593, 2217, 2430
Sau3AI GATC 6 cut(s) 54, 478, 651, 1204, 1527, 2337
Sau96I GGNCC 2 cut(s) 1237, 1821
ScaI AGTACT 1 cut(s) 1949
SchI GAGTC 4 cut(s) 893, 1306, 2183, 2234
ScrFI CCNGG 4 cut(s) 1010, 1202, 1775, 1819
SduI GDGCHC 3 cut(s) 1894, 2233, 2324
SexAI ACCWGGT 1 cut(s) 1817
SfaNI GCATC 5 cut(s) 79, 1411, 2196, 2298, 2334
SfcI CTRYAG 2 cut(s) 1857, 2193
SfuI TTCGAA 1 cut(s) 1577
SinI GGWCC 2 cut(s) 1237, 1821
SmiI ATTTAAAT 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 647
SmlI CTYRAG 2 cut(s) 230, 2279
SmoI CTYRAG 2 cut(s) 230, 2279
SsiI CCGC 3 cut(s) 785, 1094, 2219
SspI AATATT 1 cut(s) 969
SspMI CTAG 7 cut(s) 179, 242, 974, 1055, 1524, 1554, 2094
StyD4I CCNGG 4 cut(s) 1008, 1200, 1773, 1817
StyI CCWWGG 4 cut(s) 48, 435, 591, 1523
SwaI ATTTAAAT 1 cut(s) 310
TaaI ACNGT 8 cut(s) 360, 429, 548, 893, 1075, 1229, 1861, 2002
TaiI ACGT 1 cut(s) 934
TaqI TCGA 4 cut(s) 949, 1577, 1785, 2106
TaqII GACCGA 1 cut(s) 1307
TatI WGTACW 2 cut(s) 1947, 2037
TfiI GAWTC 9 cut(s) 113, 203, 254, 397, 532, 1102, 1574, 1601, 2086
Tru1I TTAA 6 cut(s) 231, 309, 387, 1220, 1268, 1607
Tru9I TTAA 6 cut(s) 231, 309, 387, 1220, 1268, 1607
TscAI CASTG 4 cut(s) 365, 1804, 1866, 2202
TseFI GTSAC 1 cut(s) 1996
TseI GCWGC 7 cut(s) 566, 695, 1154, 1550, 1592, 2216, 2429
Tsp45I GTSAC 1 cut(s) 1996
TspDTI ATGAA 8 cut(s) 204, 545, 659, 1286, 1293, 1488, 1614, 2181
TspGWI ACGGA 2 cut(s) 548, 1229
TspRI CASTG 4 cut(s) 365, 1804, 1866, 2202
Vha464I CTTAAG 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 1237, 1821
XapI RAATTY 5 cut(s) 128, 951, 1331, 1969, 2073
XceI RCATGY 1 cut(s) 757
XmaJI CCTAGG 1 cut(s) 1523
XmiI GTMKAC 1 cut(s) 2311
XmnI GAANNNNTTC 3 cut(s) 1495, 1539, 2172
XspI CTAG 7 cut(s) 179, 242, 974, 1055, 1524, 1554, 2094
ZrmI AGTACT 1 cut(s) 1949
Zsp2I ATGCAT 1 cut(s) 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.