Rh3DG119000

HEAT-like repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003507
Physical Location & Seq
Reverse (-)
9987787 .. 9992106
4320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG119000.1

Sequence Viewer

Length: 2523 bp
ATGGCCATGGAGATCACTCAGTATCTATTGGCAGCTCAATCAGCAGATGCAAGAGTTCGTACTGAAGCGGAGTCTAATCTGAGGCAATTTCAAGAGCAAAACCTTCCTGCTTTCCTTCTGTCATTGTCAGTTGAGCTAGCCAACAGTGAAAAGCCAATTGAATCCCGTAGGTTGGCTGGTATTGTTCTGAAGAACTCCTTGGATGCTAAAGATGCTGTTACAAAGGAACGTCTTGCTCAGCAATGGATGGCTGTTGATATTGCTTTTAAATCCCAAATCAAGGAAATGCTCTTACTGACACTTGCGTCATCTGTGCGAGAGGCAAGGCACACCTCTGCTCAAGTTCTTGCCAAAGTTGCTTCTATTGATATTCCTCGGAAACAGTGGCCTGAGCTAATTGCATATTTGCTTAATAACATGACTAAGGGAGACAGCTCTGCTGATTTGAAACAGTCAACCTTGGAAACTCTTGGTTATGTATGCGAGGAGATATCCCATCATGATCTCGGGCAAGACGAGGTGAATTCTATTCTTACAGCTGTTGTACAAGGAATGAACCTTGCTGAGAACAGTCCTGAAGTCCGTCTTGCTGCCACAAAGGCTTTATATAATGCCTTGGAGTTTGCTGAGACAAACTTTCAAAACGAGATGGAACGAACATACATCATGAAGATGGTCTGTGAAACAGCCTTGTCGAAAGAAGTAGAGATTAGGCAGGCGGCTTTTGAGTGCCTTGCTTCAATTGCTTCTACGTACTATGACGTGCTTGAGGCATACATGCAGGCTCTCTTTGAGCTTACTTCAAATGCTGTAAAGGGGGATGTAGAGGCTGTTGCCCTCCAAGCAATCGAGTTTTGGAGCTCCATTTGTGATGAAGAAATAGAATTGCAAGAGTATGAGAGTGCTGATACTGGGGACTCTGGGCATCCACATTCACGTTTTATAGAAAAATCTCTATCATATCTAGTTCCAATGCTGCTGGAAACTTTGCTGAAGCAGGAAGAAGATGTAGACCAGGATGACAGCATTTGGAATATCTCAATGGCTGGTGGAACATGCCTAGGACTTGTTGCACGAACTGTTGGTGATGCAATTCTTCCCCTTGTGATGCCATTTGTGGAGGCTAACATAGCGCAACCAGATTGGCGTTGTCAGGAAGCAGCTACTTTGGCATTTGGCTCAATCCTTGAAGGTCCAACCGTTGAGAAGCTATCAGTACTGGTCCATTCAGGTTTAGATTTCCTATTGAGGTTATTGAAAGATGGAAACAACCATGTCAAAGACACTACTGCCTGGACTATCGGCCGTATATTTGAGTACCTGCACAGTCCTGCTGGTGGCTTTTCTGTTATTTCTTCAGATAACCTTCCAAAAGTAGTGGAAGTATTGTTGGAAAGCATTAAGGATGCTCCAAATGTTGCTGCTAAGGTTTGTTGGGCTATTTATAAGCTTGCCGAGGGGTACGAGGATGCTGGAAGGCACTCATCACTTTTTACGCCTTATATCCATAGGATCATTGAAAGTCTTCTTTTTGCTGCTAGTCGTACAGATGTAGATGATTCTAGATTGAGGTCTGCTGCCTATGAATCATTGAACGAGGTAGTGAGGTGTTCTAATATTAAAGAAACATCACAGATTATACGAGAACTACTCCCTGTGATTTTGCAGAAGTTGAGTCAGACTCTAGAGCTTCAGATTGTATCATCAGATGACAAGGAAAAGCAAGCAGACTTGCAGGCTTCTCTTTGTGGTGTTCTCCAGGTTATAATCCAGAAAGTTAGCAGTGCTGATGATTTGGAAACCAGGTCCATTATATTGACACAGGCAGACCAGATAATGTTTTTGTTTCTTAATGTCTTTGCTTGCCGAAGTTCTACAGTGCACGAGGAAGCAATGCTTGCTATTGGTGCCCTTGCTCATGCTACTGGATCTGAGTTTGGCAAGTACCTTCCTGACTTCTACAAGTATTTAGAGATGGGGTTGCAAAATTTCGAGGAATATCAAGTCTGTTCTATTACAGTTGGTGTAGTTGGTGATGTTGTTCGTGCCTTGAATGACAAGGTATTACCATATTGTGATGGGATTATGCAACTTCTGTTGGCAAATCTTTCTAGTGAAGCACTCGACCGGTCTGTCAAGCCTCCCATATTCTCTGTCTTTAGCGACATAGCTCTCTCAATAGAGGAGAATTTTGAGAAGTATGTTCCCTATGCAGTGCCAATGATGCAGAGAGCTGCAGAGCTTTGTGCTCAGATGGACCCCAATGATGATGAGCTAATGGAATACGGCAACCAGCTTAAGTGTAGCATATTTGAAGCTTATTCGGGTATACTTCAGGGATTTAAGAATTCAAAGTCTGAGGTCATGTTGCCCTATGCACCACATCTCTGGCAGTTCATCGAATTGGTTTTGAGGGAGCAACACAGGTATGACTCTCTCTCTCTCTCTCTCACACACACACACACATATTATGAATATTATTCTGATGTTTTCGTTCCTTGTCTTGCAGGGATGTCCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0006606 GO:0006607 GO:0006610 GO:0006810 GO:0006886 GO:0006913 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007154 GO:0007165 GO:0007264 GO:0007265 GO:0008092 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009987 GO:0010494 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019894 GO:0019899 GO:0019904 GO:0022402 GO:0022607 GO:0023052 GO:0030953 GO:0031072 GO:0031090 GO:0031122 GO:0031291 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034399 GO:0034504 GO:0034613 GO:0035556 GO:0035770 GO:0036464 GO:0040001 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046907 GO:0048285 GO:0050000 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051225 GO:0051234 GO:0051276 GO:0051293 GO:0051303 GO:0051305 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051653 GO:0051656 GO:0051716 GO:0051879 GO:0065007 GO:0070013 GO:0070727 GO:0070925 GO:0071702 GO:0071705 GO:0071782 GO:0071840 GO:0072594 GO:0090307 GO:0097435 GO:0098813 GO:0098827 GO:0140014 GO:1902850 GO:1903047 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
HEAT HEAT_EZ IBN_N

Protein Analysis

840

Amino Acids

93.65

Weight (kDa)

4.66

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 23 - 102 6.7e-10 Importin-beta N-terminal domain
TPR_IPO5 PF25780 107 - 266 9.9e-10 IPO5-like, TPR repeats
HEAT_EZ PF13513 382 - 437 1.1e-10 HEAT-like repeat
TPR_IMB1 PF25574 459 - 816 9.5e-97 Importin subunit beta-1-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1446, 1766
AasI GACNNNNNNGTC 2 cut(s) 304, 2132
Acc36I ACCTGC 1 cut(s) 1329
AccB1I GGYRCC 1 cut(s) 1907
AccI GTMKAC 2 cut(s) 1011, 2329
AciI CCGC 2 cut(s) 68, 719
AclWI GGATC 2 cut(s) 1520, 1936
AcoI YGGCCR 2 cut(s) 3, 1303
AcsI RAATTY 4 cut(s) 523, 1987, 2188, 2347
AcuI CTGAAG 7 cut(s) 84, 209, 597, 1013, 1341, 1676, 2318
AfaI GTAC 8 cut(s) 61, 546, 755, 1218, 1319, 1463, 1546, 1946
AfiI CCNNNNNNNGG 3 cut(s) 172, 280, 1337
AflII CTTAAG 1 cut(s) 2297
AgeI ACCGGT 1 cut(s) 2127
AjiI CACGTC 1 cut(s) 763
AjnI CCWGG 4 cut(s) 1014, 1292, 1758, 1802
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
Alw21I GWGCWC 3 cut(s) 863, 1884, 2251
Alw26I GTCTC 2 cut(s) 423, 623
Alw44I GTGCAC 1 cut(s) 1880
AlwI GGATC 2 cut(s) 1520, 1936
Ama87I CYCGRG 1 cut(s) 506
AoxI GGCC 3 cut(s) 3, 386, 1303
ApaLI GTGCAC 1 cut(s) 1880
ApeKI GCWGC 8 cut(s) 32, 590, 976, 1160, 1421, 1535, 1577, 2234
ApoI RAATTY 4 cut(s) 523, 1987, 2188, 2347
AsiGI ACCGGT 1 cut(s) 2127
Asp700I GAANNNNTTC 1 cut(s) 1524
AspA2I CCTAGG 1 cut(s) 1060
AspLEI GCGC 1 cut(s) 1135
AspS9I GGNCC 4 cut(s) 1193, 1222, 1806, 2257
AsuHPI GGTGA 3 cut(s) 532, 1097, 2045
AsuNHI GCTAGC 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 4 cut(s) 1193, 1222, 1806, 2257
AvrII CCTAGG 1 cut(s) 1060
BaeGI GKGCMC 2 cut(s) 1884, 1912
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1907
BanII GRGCYC 1 cut(s) 863
BauI CACGAG 1 cut(s) 1883
BbsI GAAGAC 1 cut(s) 1517
Bbv12I GWGCWC 3 cut(s) 863, 1884, 2251
BbvI GCAGC 8 cut(s) 44, 577, 963, 1172, 1408, 1522, 1564, 2221
BccI CCATC 8 cut(s) 241, 504, 643, 667, 1256, 1969, 2072, 2248
BceAI ACGGC 2 cut(s) 1290, 2302
BciT130I CCWGG 4 cut(s) 1016, 1294, 1760, 1804
BcoDI GTCTC 2 cut(s) 423, 623
BfaI CTAG 7 cut(s) 137, 965, 1061, 1539, 1563, 1685, 2112
BfmI CTRYAG 2 cut(s) 1875, 2235
BfrI CTTAAG 1 cut(s) 2297
BfuAI ACCTGC 1 cut(s) 1329
BglI GCCNNNNNGGC 1 cut(s) 599
BisI GCNGC 9 cut(s) 33, 591, 720, 977, 1161, 1422, 1536, 1578, 2235
BlnI CCTAGG 1 cut(s) 1060
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 9 cut(s) 34, 592, 721, 978, 1162, 1423, 1537, 1579, 2236
BmcAI AGTACT 1 cut(s) 1218
Bme1390I CCNGG 4 cut(s) 1016, 1294, 1760, 1804
Bme18I GGWCC 4 cut(s) 1193, 1222, 1806, 2257
BmeT110I CYCGRG 1 cut(s) 506
BmgBI CACGTC 1 cut(s) 763
BmgT120I GGNCC 4 cut(s) 1193, 1222, 1806, 2257
BmiI GGNNCC 2 cut(s) 1909, 2259
BmrFI CCNGG 4 cut(s) 1016, 1294, 1760, 1804
BmrI ACTGGG 1 cut(s) 921
BmsI GCATC 9 cut(s) 37, 193, 202, 934, 1078, 1098, 1396, 1459, 2214
BmtI GCTAGC 1 cut(s) 140
BmuI ACTGGG 1 cut(s) 921
BpiI GAAGAC 1 cut(s) 1517
BplI GAGNNNNNCTC 4 cut(s) 1635, 1667, 1666, 1698
BpmI CTGGAG 1 cut(s) 1742
Bpu10I CCTNAGC 2 cut(s) 390, 1425
Bpu1102I GCTNAGC 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 324, 788
BsaAI YACGTR 1 cut(s) 753
BsaJI CCNNGG 7 cut(s) 6, 198, 374, 459, 615, 1060, 1455
BsaWI WCCGGW 1 cut(s) 2127
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 280, 1337
Bse118I RCCGGY 1 cut(s) 2127
Bse1I ACTGG 3 cut(s) 916, 1224, 1930
Bse3DI GCAATG 2 cut(s) 248, 1899
BseBI CCWGG 4 cut(s) 1016, 1294, 1760, 1804
BseDI CCNNGG 7 cut(s) 6, 198, 374, 459, 615, 1060, 1455
BseGI GGATG 8 cut(s) 208, 252, 826, 925, 1024, 1411, 1474, 2517
BseLI CCNNNNNNNGG 3 cut(s) 172, 280, 1337
BseMI GCAATG 2 cut(s) 248, 1899
BseMII CTCAG 9 cut(s) 32, 71, 251, 381, 555, 618, 1923, 2264, 2349
BseNI ACTGG 3 cut(s) 916, 1224, 1930
BseRI GAGGAG 2 cut(s) 500, 2198
BseSI GKGCMC 2 cut(s) 1884, 1912
BseX3I CGGCCG 1 cut(s) 1303
BseXI GCAGC 8 cut(s) 44, 577, 963, 1172, 1408, 1522, 1564, 2221
BsgI GTGCAG 1 cut(s) 1307
Bsh1285I CGRYCG 2 cut(s) 1306, 2128
BshFI GGCC 3 cut(s) 5, 388, 1305
BshNI GGYRCC 1 cut(s) 1907
BshTI ACCGGT 1 cut(s) 2127
BsiEI CGRYCG 2 cut(s) 1306, 2128
BsiHKAI GWGCWC 3 cut(s) 863, 1884, 2251
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 1 cut(s) 2128
BslFI GGGAC 1 cut(s) 929
BslI CCNNNNNNNGG 3 cut(s) 172, 280, 1337
BsmAI GTCTC 2 cut(s) 423, 623
BsmFI GGGAC 1 cut(s) 929
BsnI GGCC 3 cut(s) 5, 388, 1305
BsoBI CYCGRG 1 cut(s) 506
Bsp1286I GDGCHC 4 cut(s) 863, 1884, 1912, 2251
Bsp1407I TGTACA 1 cut(s) 544
Bsp143I GATC 4 cut(s) 12, 502, 1512, 1928
Bsp1720I GCTNAGC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 68, 719
BspANI GGCC 3 cut(s) 5, 388, 1305
BspCNI CTCAG 9 cut(s) 31, 72, 250, 382, 556, 619, 1924, 2263, 2350
BspHI TCATGA 2 cut(s) 499, 666
BspLI GGNNCC 2 cut(s) 1909, 2259
BspMAI CTGCAG 1 cut(s) 2239
BspMI ACCTGC 1 cut(s) 1329
BspOI GCTAGC 1 cut(s) 140
BspPI GGATC 2 cut(s) 1520, 1936
BspT107I GGYRCC 1 cut(s) 1907
BspTI CTTAAG 1 cut(s) 2297
BsrDI GCAATG 2 cut(s) 248, 1899
BsrFI RCCGGY 1 cut(s) 2127
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 3 cut(s) 916, 1224, 1930
BssAI RCCGGY 1 cut(s) 2127
BssECI CCNNGG 7 cut(s) 6, 198, 374, 459, 615, 1060, 1455
BssMI GATC 4 cut(s) 12, 502, 1512, 1928
BssNAI GTATAC 1 cut(s) 2330
BssSI CACGAG 1 cut(s) 1883
BssT1I CCWWGG 5 cut(s) 6, 198, 459, 615, 1060
Bst1107I GTATAC 1 cut(s) 2330
Bst2BI CACGAG 1 cut(s) 1883
Bst2UI CCWGG 4 cut(s) 1016, 1294, 1760, 1804
Bst4CI ACNGT 9 cut(s) 146, 384, 453, 572, 1081, 1201, 1328, 1879, 2020
BstAFI CTTAAG 1 cut(s) 2297
BstAPI GCANNNNNTGC 1 cut(s) 1898
BstAUI TGTACA 1 cut(s) 544
BstBAI YACGTR 1 cut(s) 753
BstC8I GCNNGC 8 cut(s) 138, 717, 783, 1452, 1725, 1737, 1864, 1899
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 8 cut(s) 208, 252, 826, 925, 1024, 1411, 1474, 2517
BstHHI GCGC 1 cut(s) 1135
BstKTI GATC 4 cut(s) 15, 505, 1515, 1931
BstMAI GTCTC 2 cut(s) 423, 623
BstMBI GATC 4 cut(s) 12, 502, 1512, 1928
BstMCI CGRYCG 2 cut(s) 1306, 2128
BstNI CCWGG 4 cut(s) 1016, 1294, 1760, 1804
BstNSI RCATGY 2 cut(s) 781, 1059
BstSCI CCNGG 4 cut(s) 1014, 1292, 1758, 1802
BstSFI CTRYAG 2 cut(s) 1875, 2235
BstSLI GKGCMC 2 cut(s) 1884, 1912
BstSNI TACGTA 1 cut(s) 753
BstV1I GCAGC 8 cut(s) 44, 577, 963, 1172, 1408, 1522, 1564, 2221
BstV2I GAAGAC 1 cut(s) 1517
BstX2I RGATCY 1 cut(s) 1928
BstXI CCANNNNNNTGG 1 cut(s) 2388
BstYI RGATCY 1 cut(s) 1928
BstZ17I GTATAC 1 cut(s) 2330
BstZI CGGCCG 1 cut(s) 1303
BsuRI GGCC 3 cut(s) 5, 388, 1305
BtgI CCRYGG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 763
BtsCI GGATG 8 cut(s) 208, 252, 826, 925, 1024, 1411, 1474, 2517
BtsI GCAGTG 2 cut(s) 1789, 2220
BtsIMutI CAGTG 5 cut(s) 151, 389, 1789, 1884, 2220
BveI ACCTGC 1 cut(s) 1329
Cac8I GCNNGC 8 cut(s) 138, 717, 783, 1452, 1725, 1737, 1864, 1899
CciI TCATGA 2 cut(s) 499, 666
CfoI GCGC 1 cut(s) 1135
Cfr10I RCCGGY 1 cut(s) 2127
Cfr13I GGNCC 4 cut(s) 1193, 1222, 1806, 2257
CseI GACGC 1 cut(s) 294
CsiI ACCWGGT 1 cut(s) 1802
Csp6I GTAC 8 cut(s) 60, 545, 754, 1217, 1318, 1462, 1545, 1945
CspAI ACCGGT 1 cut(s) 2127
CspCI CAANNNNNGTGG 2 cut(s) 1359, 1394
CviAII CATG 9 cut(s) 7, 418, 500, 667, 778, 1056, 1274, 1919, 2365
CviQI GTAC 8 cut(s) 60, 545, 754, 1217, 1318, 1462, 1545, 1945
DpnI GATC 4 cut(s) 14, 504, 1514, 1930
DpnII GATC 4 cut(s) 12, 502, 1512, 1928
DraI TTTAAA 1 cut(s) 268
DrdI GACNNNNNNGTC 2 cut(s) 304, 2132
DseDI GACNNNNNNGTC 2 cut(s) 304, 2132
EaeI YGGCCR 2 cut(s) 3, 1303
EagI CGGCCG 1 cut(s) 1303
Ecl136II GAGCTC 1 cut(s) 861
EclXI CGGCCG 1 cut(s) 1303
Eco105I TACGTA 1 cut(s) 753
Eco130I CCWWGG 5 cut(s) 6, 198, 459, 615, 1060
Eco24I GRGCYC 1 cut(s) 863
Eco32I GATATC 1 cut(s) 492
Eco47I GGWCC 4 cut(s) 1193, 1222, 1806, 2257
Eco52I CGGCCG 1 cut(s) 1303
Eco53kI GAGCTC 1 cut(s) 861
Eco57I CTGAAG 7 cut(s) 84, 209, 597, 1013, 1341, 1676, 2318
Eco88I CYCGRG 1 cut(s) 506
EcoICRI GAGCTC 1 cut(s) 861
EcoRI GAATTC 2 cut(s) 523, 2347
EcoRII CCWGG 4 cut(s) 1014, 1292, 1758, 1802
EcoRV GATATC 1 cut(s) 492
EcoT14I CCWWGG 5 cut(s) 6, 198, 459, 615, 1060
EcoT38I GRGCYC 1 cut(s) 863
ErhI CCWWGG 5 cut(s) 6, 198, 459, 615, 1060
FaeI CATG 9 cut(s) 10, 421, 503, 670, 781, 1059, 1277, 1922, 2368
FalI AAGNNNNNCTT 6 cut(s) 182, 214, 570, 602, 1881, 1913
FaqI GGGAC 1 cut(s) 929
FatI CATG 9 cut(s) 6, 417, 499, 666, 777, 1055, 1273, 1918, 2364
FblI GTMKAC 2 cut(s) 1011, 2329
Fnu4HI GCNGC 9 cut(s) 33, 591, 720, 977, 1161, 1422, 1536, 1578, 2235
FokI GGATG 7 cut(s) 215, 259, 833, 912, 1031, 1418, 1481
FriOI GRGCYC 1 cut(s) 863
Fsp4HI GCNGC 9 cut(s) 33, 591, 720, 977, 1161, 1422, 1536, 1578, 2235
FspBI CTAG 7 cut(s) 137, 965, 1061, 1539, 1563, 1685, 2112
GlaI GCGC 1 cut(s) 1134
GluI GCNGC 9 cut(s) 33, 591, 720, 977, 1161, 1422, 1536, 1578, 2235
GsuI CTGGAG 1 cut(s) 1742
HaeIII GGCC 3 cut(s) 5, 388, 1305
HapII CCGG 1 cut(s) 2128
HgaI GACGC 1 cut(s) 294
HhaI GCGC 1 cut(s) 1135
Hin1II CATG 9 cut(s) 10, 421, 503, 670, 781, 1059, 1277, 1922, 2368
Hin6I GCGC 1 cut(s) 1133
HinP1I GCGC 1 cut(s) 1133
HincII GTYRAC 1 cut(s) 456
HindII GTYRAC 1 cut(s) 456
HindIII AAGCTT 2 cut(s) 1448, 2316
HinfI GANTC 8 cut(s) 71, 161, 917, 1559, 1586, 1675, 1681, 2432
HpaII CCGG 1 cut(s) 2128
HphI GGTGA 3 cut(s) 532, 1097, 2045
Hpy166II GTNNAC 4 cut(s) 456, 1012, 1882, 2330
Hpy188III TCNNGA 9 cut(s) 92, 500, 575, 667, 1154, 1563, 1685, 1771, 1952
Hpy8I GTNNAC 4 cut(s) 456, 1012, 1882, 2330
HpyAV CCTTC 6 cut(s) 113, 125, 1184, 1376, 1470, 1958
HpyCH4III ACNGT 9 cut(s) 146, 384, 453, 572, 1081, 1201, 1328, 1879, 2020
HpyCH4IV ACGT 4 cut(s) 229, 752, 762, 937
HpySE526I ACGT 4 cut(s) 229, 752, 762, 937
Hsp92II CATG 9 cut(s) 10, 421, 503, 670, 781, 1059, 1277, 1922, 2368
HspAI GCGC 1 cut(s) 1133
Kzo9I GATC 4 cut(s) 12, 502, 1512, 1928
LmnI GCTCC 4 cut(s) 858, 866, 1414, 2416
Lsp1109I GCAGC 8 cut(s) 44, 577, 963, 1172, 1408, 1522, 1564, 2221
LweI GCATC 9 cut(s) 37, 193, 202, 934, 1078, 1098, 1396, 1459, 2214
MabI ACCWGGT 1 cut(s) 1802
MaeI CTAG 7 cut(s) 137, 965, 1061, 1539, 1563, 1685, 2112
MaeII ACGT 4 cut(s) 229, 752, 762, 937
MaeIII GTNAC 1 cut(s) 217
MalI GATC 4 cut(s) 14, 504, 1514, 1930
MboI GATC 4 cut(s) 12, 502, 1512, 1928
MboII GAAGA 8 cut(s) 202, 682, 887, 1013, 1016, 1088, 1347, 1517
MfeI CAATTG 2 cut(s) 156, 741
MflI RGATCY 1 cut(s) 1928
MhlI GDGCHC 4 cut(s) 863, 1884, 1912, 2251
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 5 cut(s) 80, 911, 1675, 1684, 2426
MmeI TCCRAC 2 cut(s) 1220, 1371
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 1524
MscI TGGCCA 1 cut(s) 5
MseI TTAA 7 cut(s) 267, 411, 1401, 1620, 1851, 2298, 2343
MslI CAYNNNNRTG 2 cut(s) 671, 2427
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 539, 2520
MspCI CTTAAG 1 cut(s) 2297
MspI CCGG 1 cut(s) 2128
MspR9I CCNGG 4 cut(s) 1016, 1294, 1760, 1804
MunI CAATTG 2 cut(s) 156, 741
MvaI CCWGG 4 cut(s) 1016, 1294, 1760, 1804
NcoI CCATGG 1 cut(s) 6
NdeII GATC 4 cut(s) 12, 502, 1512, 1928
NheI GCTAGC 1 cut(s) 136
NlaIII CATG 9 cut(s) 10, 421, 503, 670, 781, 1059, 1277, 1922, 2368
NlaIV GGNNCC 2 cut(s) 1909, 2259
NmeAIII GCCGAG 1 cut(s) 1480
NspI RCATGY 2 cut(s) 781, 1059
PagI TCATGA 2 cut(s) 499, 666
PcsI WCGNNNNNNNCGW 1 cut(s) 513
PdmI GAANNNNTTC 1 cut(s) 1524
PfeI GAWTC 3 cut(s) 161, 1559, 1586
PinAI ACCGGT 1 cut(s) 2127
PkrI GCNGC 9 cut(s) 34, 592, 721, 978, 1162, 1423, 1537, 1579, 2236
PleI GAGTC 5 cut(s) 79, 911, 1675, 1683, 2426
PpsI GAGTC 5 cut(s) 79, 911, 1675, 1683, 2426
Ppu21I YACGTR 1 cut(s) 753
PsiI TTATAA 2 cut(s) 1446, 1766
Psp124BI GAGCTC 1 cut(s) 863
Psp6I CCWGG 4 cut(s) 1014, 1292, 1758, 1802
PspGI CCWGG 4 cut(s) 1014, 1292, 1758, 1802
PspN4I GGNNCC 2 cut(s) 1909, 2259
PspPI GGNCC 4 cut(s) 1193, 1222, 1806, 2257
PstI CTGCAG 1 cut(s) 2239
PsuI RGATCY 1 cut(s) 1928
PvuII CAGCTG 2 cut(s) 539, 2520
RsaI GTAC 8 cut(s) 61, 546, 755, 1218, 1319, 1463, 1546, 1946
RsaNI GTAC 8 cut(s) 60, 545, 754, 1217, 1318, 1462, 1545, 1945
RseI CAYNNNNRTG 2 cut(s) 671, 2427
SacI GAGCTC 1 cut(s) 863
SaqAI TTAA 7 cut(s) 267, 411, 1401, 1620, 1851, 2298, 2343
SatI GCNGC 9 cut(s) 33, 591, 720, 977, 1161, 1422, 1536, 1578, 2235
Sau3AI GATC 4 cut(s) 12, 502, 1512, 1928
Sau96I GGNCC 4 cut(s) 1193, 1222, 1806, 2257
ScaI AGTACT 1 cut(s) 1218
SchI GAGTC 5 cut(s) 80, 911, 1675, 1684, 2426
ScrFI CCNGG 4 cut(s) 1016, 1294, 1760, 1804
SduI GDGCHC 4 cut(s) 863, 1884, 1912, 2251
SexAI ACCWGGT 1 cut(s) 1802
SfaNI GCATC 9 cut(s) 37, 193, 202, 934, 1078, 1098, 1396, 1459, 2214
SfcI CTRYAG 2 cut(s) 1875, 2235
SinI GGWCC 4 cut(s) 1193, 1222, 1806, 2257
SmiMI CAYNNNNRTG 2 cut(s) 671, 2427
SmlI CTYRAG 3 cut(s) 339, 767, 2297
SmoI CTYRAG 3 cut(s) 339, 767, 2297
SnaBI TACGTA 1 cut(s) 753
SsiI CCGC 2 cut(s) 68, 719
SspI AATATT 2 cut(s) 1618, 2477
SspMI CTAG 7 cut(s) 137, 965, 1061, 1539, 1563, 1685, 2112
SstI GAGCTC 1 cut(s) 863
StyD4I CCNGG 4 cut(s) 1014, 1292, 1758, 1802
StyI CCWWGG 5 cut(s) 6, 198, 459, 615, 1060
TaaI ACNGT 9 cut(s) 146, 384, 453, 572, 1081, 1201, 1328, 1879, 2020
TaiI ACGT 4 cut(s) 232, 755, 765, 940
TaqI TCGA 5 cut(s) 695, 849, 1992, 2124, 2400
TatI WGTACW 2 cut(s) 544, 1216
TauI GCSGC 1 cut(s) 722
TfiI GAWTC 3 cut(s) 161, 1559, 1586
Tru1I TTAA 7 cut(s) 267, 411, 1401, 1620, 1851, 2298, 2343
Tru9I TTAA 7 cut(s) 267, 411, 1401, 1620, 1851, 2298, 2343
TscAI CASTG 5 cut(s) 151, 389, 1789, 1884, 2220
TseI GCWGC 8 cut(s) 32, 590, 976, 1160, 1421, 1535, 1577, 2234
TspDTI ATGAA 6 cut(s) 569, 683, 888, 1599, 2386, 2487
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 5 cut(s) 151, 389, 1789, 1884, 2220
Vha464I CTTAAG 1 cut(s) 2297
VneI GTGCAC 1 cut(s) 1880
VpaK11BI GGWCC 4 cut(s) 1193, 1222, 1806, 2257
XapI RAATTY 4 cut(s) 523, 1987, 2188, 2347
XbaI TCTAGA 2 cut(s) 1562, 1684
XceI RCATGY 2 cut(s) 781, 1059
XmaJI CCTAGG 1 cut(s) 1060
XmiI GTMKAC 2 cut(s) 1011, 2329
XmnI GAANNNNTTC 1 cut(s) 1524
XspI CTAG 7 cut(s) 137, 965, 1061, 1539, 1563, 1685, 2112
ZrmI AGTACT 1 cut(s) 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.