isoform X1
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G41830 AT2G41830 |
| fragaria_vesca | FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 |
| malus_domestica | MD12G1077200.v1.1 MD14G1070800.v1.1 |
| prunus_persica | Prupe.7G063500_v2.0.a1 Prupe.7G063500_v2.0.a1 |
| pyrus_communis | pycom12g06250 pycom14g06020 |
| rosa_chinensis | RchiOBHm_Chr3g0481871 |
| rosa_laevigata | RLG00000023380 |
| rosa_multiflora | Rmu_ssc0000267.1_g000017 |
| rosa_roxburghii | Rroxscaffold_6G00399810 Rroxscaffold_6G00400140 |
| rosa_rugosa | Rorug03G0194100 Rorug03G0194200 |
| rosa_samantha | Rh1AG268100 Rh3AG245100 Rh3BG280300 Rh3CG275200 Rh3CG275600 Rh3CG276300 Rh3CG276400 Rh4CG314400 |
| rosa_wichuraiana | Rw0G004350 Rw3G021880 Rw3G021900 Rw3G021930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2921 |
| Acc36I | ACCTGC | 1 cut(s) | 2130 |
| AccBSI | CCGCTC | 1 cut(s) | 2955 |
| AccI | GTMKAC | 1 cut(s) | 2471 |
| AccII | CGCG | 1 cut(s) | 28 |
| AciI | CCGC | 4 cut(s) | 79, 262, 2092, 2955 |
| AclWI | GGATC | 4 cut(s) | 393, 2243, 2308, 2335 |
| AcoI | YGGCCR | 3 cut(s) | 882, 2787, 2791 |
| AcuI | CTGAAG | 5 cut(s) | 660, 1554, 1650, 2130, 3046 |
| AcvI | CACGTG | 1 cut(s) | 1526 |
| AcyI | GRCGYC | 1 cut(s) | 2918 |
| AfaI | GTAC | 4 cut(s) | 110, 1296, 1414, 3041 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 47, 105, 702, 846, 965, 1501, 1779, 2263, 2800 |
| AflIII | ACRYGT | 3 cut(s) | 468, 1523, 1525 |
| AgsI | TTSAA | 8 cut(s) | 579, 689, 1798, 1828, 1848, 1878, 2066, 2270 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 98, 2437 |
| AjiI | CACGTC | 1 cut(s) | 2135 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1512, 1544, 1846, 1878 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 908, 940 |
| Alw21I | GWGCWC | 2 cut(s) | 603, 785 |
| Alw26I | GTCTC | 4 cut(s) | 347, 960, 1761, 2717 |
| AlwI | GGATC | 4 cut(s) | 393, 2243, 2308, 2335 |
| Ama87I | CYCGRG | 2 cut(s) | 1322, 2031 |
| ApeKI | GCWGC | 8 cut(s) | 194, 557, 1096, 1670, 1914, 2485, 3104, 3111 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 22 |
| AspLEI | GCGC | 2 cut(s) | 30, 1537 |
| AspS9I | GGNCC | 7 cut(s) | 81, 155, 1325, 1504, 2034, 2117, 2142 |
| AsuC2I | CCSGG | 3 cut(s) | 71, 1323, 1324 |
| AsuHPI | GGTGA | 2 cut(s) | 608, 741 |
| AvaI | CYCGRG | 2 cut(s) | 1322, 2031 |
| AvaII | GGWCC | 3 cut(s) | 155, 1504, 2142 |
| AxyI | CCTNAGG | 2 cut(s) | 1470, 1904 |
| BaeGI | GKGCMC | 1 cut(s) | 1954 |
| BalI | TGGCCA | 1 cut(s) | 884 |
| BanII | GRGCYC | 3 cut(s) | 785, 1152, 2533 |
| BbrPI | CACGTG | 1 cut(s) | 1526 |
| BbsI | GAAGAC | 2 cut(s) | 1537, 1734 |
| Bbv12I | GWGCWC | 2 cut(s) | 603, 785 |
| BbvI | GCAGC | 8 cut(s) | 181, 544, 1108, 1657, 1926, 2497, 3091, 3098 |
| BccI | CCATC | 7 cut(s) | 452, 1000, 1515, 1573, 2137, 2316, 2438 |
| BciVI | GTATCC | 1 cut(s) | 1003 |
| BclI | TGATCA | 2 cut(s) | 1063, 2971 |
| BcnI | CCSGG | 3 cut(s) | 71, 1323, 1324 |
| BcoDI | GTCTC | 4 cut(s) | 347, 960, 1761, 2717 |
| BfaI | CTAG | 1 cut(s) | 90 |
| BfmI | CTRYAG | 2 cut(s) | 863, 3105 |
| BfuAI | ACCTGC | 1 cut(s) | 2130 |
| BfuI | GTATCC | 1 cut(s) | 1003 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 890 |
| BisI | GCNGC | 8 cut(s) | 195, 558, 1097, 1671, 1915, 2486, 3105, 3112 |
| BlsI | GCNGC | 8 cut(s) | 196, 559, 1098, 1672, 1916, 2487, 3106, 3113 |
| Bme18I | GGWCC | 3 cut(s) | 155, 1504, 2142 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 98, 2437 |
| BmeT110I | CYCGRG | 2 cut(s) | 1322, 2031 |
| BmgBI | CACGTC | 1 cut(s) | 2135 |
| BmgT120I | GGNCC | 7 cut(s) | 81, 155, 1325, 1504, 2034, 2117, 2142 |
| BmiI | GGNNCC | 4 cut(s) | 1259, 2144, 2530, 2944 |
| BmrI | ACTGGG | 2 cut(s) | 2527, 2534 |
| BmuI | ACTGGG | 2 cut(s) | 2527, 2534 |
| BpiI | GAAGAC | 2 cut(s) | 1537, 1734 |
| BpmI | CTGGAG | 2 cut(s) | 1624, 2741 |
| BpuEI | CTTGAG | 3 cut(s) | 257, 498, 2397 |
| BpuMI | CCSGG | 3 cut(s) | 71, 1323, 1324 |
| BsaAI | YACGTR | 1 cut(s) | 1526 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1230, 1798 |
| BsaHI | GRCGYC | 1 cut(s) | 2918 |
| BsaI | GGTCTC | 1 cut(s) | 960 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 47, 105, 702, 846, 965, 1501, 1779, 2263, 2800 |
| Bse118I | RCCGGY | 4 cut(s) | 702, 2789, 2939, 3070 |
| Bse1I | ACTGG | 7 cut(s) | 980, 2046, 2074, 2302, 2529, 2533, 2835 |
| Bse21I | CCTNAGG | 2 cut(s) | 1470, 1904 |
| Bse3DI | GCAATG | 2 cut(s) | 74, 2120 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1230, 1798 |
| BseJI | GATNNNNATC | 2 cut(s) | 1230, 1798 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 47, 105, 702, 846, 965, 1501, 1779, 2263, 2800 |
| BseMI | GCAATG | 2 cut(s) | 74, 2120 |
| BseMII | CTCAG | 5 cut(s) | 376, 1461, 1778, 1918, 3027 |
| BseNI | ACTGG | 7 cut(s) | 980, 2046, 2074, 2302, 2529, 2533, 2835 |
| BseSI | GKGCMC | 1 cut(s) | 1954 |
| BseXI | GCAGC | 8 cut(s) | 181, 544, 1108, 1657, 1926, 2497, 3091, 3098 |
| BseYI | CCCAGC | 1 cut(s) | 1495 |
| BsgI | GTGCAG | 4 cut(s) | 543, 731, 1191, 1824 |
| Bsh1236I | CGCG | 1 cut(s) | 28 |
| BsiHKAI | GWGCWC | 2 cut(s) | 603, 785 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1322, 2031 |
| BsiSI | CCGG | 6 cut(s) | 71, 703, 1323, 2790, 2940, 3071 |
| BslFI | GGGAC | 3 cut(s) | 2108, 2128, 3002 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 47, 105, 702, 846, 965, 1501, 1779, 2263, 2800 |
| BsmAI | GTCTC | 4 cut(s) | 347, 960, 1761, 2717 |
| BsmBI | CGTCTC | 1 cut(s) | 347 |
| BsmFI | GGGAC | 3 cut(s) | 2108, 2128, 3002 |
| BsmI | GAATGC | 1 cut(s) | 2041 |
| Bso31I | GGTCTC | 1 cut(s) | 960 |
| BsoBI | CYCGRG | 2 cut(s) | 1322, 2031 |
| Bsp1286I | GDGCHC | 5 cut(s) | 603, 785, 1152, 1954, 2533 |
| Bsp1407I | TGTACA | 1 cut(s) | 1294 |
| BspACI | CCGC | 4 cut(s) | 79, 262, 2092, 2955 |
| BspCNI | CTCAG | 5 cut(s) | 375, 1462, 1779, 1917, 3028 |
| BspFNI | CGCG | 1 cut(s) | 28 |
| BspLI | GGNNCC | 4 cut(s) | 1259, 2144, 2530, 2944 |
| BspMAI | CTGCAG | 2 cut(s) | 867, 3109 |
| BspMI | ACCTGC | 1 cut(s) | 2130 |
| BspPI | GGATC | 4 cut(s) | 393, 2243, 2308, 2335 |
| BspQI | GCTCTTC | 2 cut(s) | 1196, 2417 |
| BspTNI | GGTCTC | 1 cut(s) | 960 |
| BsrBI | CCGCTC | 1 cut(s) | 2955 |
| BsrDI | GCAATG | 2 cut(s) | 74, 2120 |
| BsrFI | RCCGGY | 4 cut(s) | 702, 2789, 2939, 3070 |
| BsrGI | TGTACA | 1 cut(s) | 1294 |
| BsrI | ACTGG | 7 cut(s) | 980, 2046, 2074, 2302, 2529, 2533, 2835 |
| BssAI | RCCGGY | 4 cut(s) | 702, 2789, 2939, 3070 |
| BssNI | GRCGYC | 1 cut(s) | 2918 |
| BssT1I | CCWWGG | 4 cut(s) | 885, 1628, 1881, 2220 |
| Bst4CI | ACNGT | 5 cut(s) | 1299, 1378, 1648, 2245, 2469 |
| Bst6I | CTCTTC | 4 cut(s) | 1196, 1269, 1687, 2417 |
| BstACI | GRCGYC | 1 cut(s) | 2918 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 379, 718, 1212 |
| BstAUI | TGTACA | 1 cut(s) | 1294 |
| BstBAI | YACGTR | 1 cut(s) | 1526 |
| BstDEI | CTNAG | 7 cut(s) | 362, 478, 1470, 1688, 1787, 1904, 3036 |
| BstEII | GGTNACC | 1 cut(s) | 1114 |
| BstFNI | CGCG | 1 cut(s) | 28 |
| BstHHI | GCGC | 2 cut(s) | 30, 1537 |
| BstMAI | GTCTC | 4 cut(s) | 347, 960, 1761, 2717 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 80, 363, 379, 566, 718, 881, 890, 1212 |
| BstNSI | RCATGY | 4 cut(s) | 48, 472, 1096, 1978 |
| BstPI | GGTNACC | 1 cut(s) | 1114 |
| BstSFI | CTRYAG | 2 cut(s) | 863, 3105 |
| BstSLI | GKGCMC | 1 cut(s) | 1954 |
| BstUI | CGCG | 1 cut(s) | 28 |
| BstV1I | GCAGC | 8 cut(s) | 181, 544, 1108, 1657, 1926, 2497, 3091, 3098 |
| BstV2I | GAAGAC | 2 cut(s) | 1537, 1734 |
| BstX2I | RGATCY | 2 cut(s) | 2300, 2327 |
| BstYI | RGATCY | 2 cut(s) | 2300, 2327 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1470, 1904 |
| BsuI | GTATCC | 1 cut(s) | 1003 |
| BtgZI | GCGATG | 1 cut(s) | 2211 |
| BtrI | CACGTC | 1 cut(s) | 2135 |
| BtsI | GCAGTG | 3 cut(s) | 560, 1210, 2794 |
| BtsIMutI | CAGTG | 8 cut(s) | 560, 987, 1210, 2053, 2379, 2500, 2522, 2794 |
| BveI | ACCTGC | 1 cut(s) | 2130 |
| CfoI | GCGC | 2 cut(s) | 30, 1537 |
| Cfr10I | RCCGGY | 4 cut(s) | 702, 2789, 2939, 3070 |
| Cfr13I | GGNCC | 7 cut(s) | 81, 155, 1325, 1504, 2034, 2117, 2142 |
| Cfr9I | CCCGGG | 1 cut(s) | 1322 |
| CseI | GACGC | 1 cut(s) | 329 |
| Csp6I | GTAC | 4 cut(s) | 109, 1295, 1413, 3040 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 271, 306 |
| CviQI | GTAC | 4 cut(s) | 109, 1295, 1413, 3040 |
| DdeI | CTNAG | 7 cut(s) | 362, 478, 1470, 1688, 1787, 1904, 3036 |
| DriI | GACNNNNNGTC | 2 cut(s) | 98, 2437 |
| EaeI | YGGCCR | 3 cut(s) | 882, 2787, 2791 |
| Eam1104I | CTCTTC | 4 cut(s) | 1196, 1269, 1687, 2417 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 98, 2437 |
| EarI | CTCTTC | 4 cut(s) | 1196, 1269, 1687, 2417 |
| Ecl136II | GAGCTC | 1 cut(s) | 783 |
| Eco130I | CCWWGG | 4 cut(s) | 885, 1628, 1881, 2220 |
| Eco147I | AGGCCT | 1 cut(s) | 1616 |
| Eco24I | GRGCYC | 3 cut(s) | 785, 1152, 2533 |
| Eco31I | GGTCTC | 1 cut(s) | 960 |
| Eco47I | GGWCC | 3 cut(s) | 155, 1504, 2142 |
| Eco53kI | GAGCTC | 1 cut(s) | 783 |
| Eco57I | CTGAAG | 5 cut(s) | 660, 1554, 1650, 2130, 3046 |
| Eco72I | CACGTG | 1 cut(s) | 1526 |
| Eco81I | CCTNAGG | 2 cut(s) | 1470, 1904 |
| Eco88I | CYCGRG | 2 cut(s) | 1322, 2031 |
| Eco91I | GGTNACC | 1 cut(s) | 1114 |
| EcoICRI | GAGCTC | 1 cut(s) | 783 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2142 |
| EcoO65I | GGTNACC | 1 cut(s) | 1114 |
| EcoRI | GAATTC | 3 cut(s) | 213, 2399, 2498 |
| EcoT14I | CCWWGG | 4 cut(s) | 885, 1628, 1881, 2220 |
| EcoT22I | ATGCAT | 1 cut(s) | 375 |
| EcoT38I | GRGCYC | 3 cut(s) | 785, 1152, 2533 |
| ErhI | CCWWGG | 4 cut(s) | 885, 1628, 1881, 2220 |
| Esp3I | CGTCTC | 1 cut(s) | 347 |
| FaqI | GGGAC | 3 cut(s) | 2108, 2128, 3002 |
| FauI | CCCGC | 2 cut(s) | 72, 2085 |
| FauNDI | CATATG | 1 cut(s) | 3085 |
| FbaI | TGATCA | 2 cut(s) | 1063, 2971 |
| FblI | GTMKAC | 1 cut(s) | 2471 |
| Fnu4HI | GCNGC | 8 cut(s) | 195, 558, 1097, 1671, 1915, 2486, 3105, 3112 |
| FriOI | GRGCYC | 3 cut(s) | 785, 1152, 2533 |
| FseI | GGCCGGCC | 1 cut(s) | 2793 |
| Fsp4HI | GCNGC | 8 cut(s) | 195, 558, 1097, 1671, 1915, 2486, 3105, 3112 |
| FspBI | CTAG | 1 cut(s) | 90 |
| GlaI | GCGC | 2 cut(s) | 29, 1536 |
| GluI | GCNGC | 8 cut(s) | 195, 558, 1097, 1671, 1915, 2486, 3105, 3112 |
| GsaI | CCCAGC | 1 cut(s) | 1499 |
| GsuI | CTGGAG | 2 cut(s) | 1624, 2741 |
| HapII | CCGG | 6 cut(s) | 71, 703, 1323, 2790, 2940, 3071 |
| HgaI | GACGC | 1 cut(s) | 329 |
| HhaI | GCGC | 2 cut(s) | 30, 1537 |
| Hin1I | GRCGYC | 1 cut(s) | 2918 |
| Hin6I | GCGC | 2 cut(s) | 28, 1535 |
| HinP1I | GCGC | 2 cut(s) | 28, 1535 |
| HindIII | AAGCTT | 1 cut(s) | 1264 |
| HinfI | GANTC | 7 cut(s) | 917, 1604, 1783, 2170, 2630, 2674, 2711 |
| HpaII | CCGG | 6 cut(s) | 71, 703, 1323, 2790, 2940, 3071 |
| HphI | GGTGA | 2 cut(s) | 608, 741 |
| Hpy166II | GTNNAC | 2 cut(s) | 2472, 2522 |
| Hpy8I | GTNNAC | 2 cut(s) | 2472, 2522 |
| Hpy99I | CGWCG | 1 cut(s) | 2139 |
| HpyCH4III | ACNGT | 5 cut(s) | 1299, 1378, 1648, 2245, 2469 |
| HpyCH4IV | ACGT | 4 cut(s) | 550, 1525, 2134, 2918 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 80, 363, 379, 566, 718, 881, 890, 1212 |
| HpyF3I | CTNAG | 7 cut(s) | 362, 478, 1470, 1688, 1787, 1904, 3036 |
| HpySE526I | ACGT | 4 cut(s) | 550, 1525, 2134, 2918 |
| Hsp92I | GRCGYC | 1 cut(s) | 2918 |
| HspAI | GCGC | 2 cut(s) | 28, 1535 |
| KroI | GCCGGC | 1 cut(s) | 2789 |
| KroNI | GCCGGC | 1 cut(s) | 2791 |
| Ksp22I | TGATCA | 2 cut(s) | 1063, 2971 |
| LguI | GCTCTTC | 2 cut(s) | 1196, 2417 |
| Lsp1109I | GCAGC | 8 cut(s) | 181, 544, 1108, 1657, 1926, 2497, 3091, 3098 |
| MaeI | CTAG | 1 cut(s) | 90 |
| MaeII | ACGT | 4 cut(s) | 550, 1525, 2134, 2918 |
| MaeIII | GTNAC | 5 cut(s) | 140, 248, 929, 1114, 2894 |
| MbiI | CCGCTC | 1 cut(s) | 2955 |
| MfeI | CAATTG | 2 cut(s) | 1995, 2316 |
| MflI | RGATCY | 2 cut(s) | 2300, 2327 |
| MhlI | GDGCHC | 5 cut(s) | 603, 785, 1152, 1954, 2533 |
| MlsI | TGGCCA | 1 cut(s) | 884 |
| MluNI | TGGCCA | 1 cut(s) | 884 |
| MmeI | TCCRAC | 5 cut(s) | 1335, 1510, 1793, 2719, 2875 |
| Mox20I | TGGCCA | 1 cut(s) | 884 |
| Mph1103I | ATGCAT | 1 cut(s) | 375 |
| MroNI | GCCGGC | 1 cut(s) | 2789 |
| MroXI | GAANNNNTTC | 1 cut(s) | 22 |
| MscI | TGGCCA | 1 cut(s) | 884 |
| MseI | TTAA | 9 cut(s) | 435, 474, 1049, 1080, 1749, 2292, 2354, 2576, 2595 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1071, 2046 |
| Msp20I | TGGCCA | 1 cut(s) | 884 |
| MspA1I | CMGCKG | 2 cut(s) | 1670, 2488 |
| MspI | CCGG | 6 cut(s) | 71, 703, 1323, 2790, 2940, 3071 |
| MunI | CAATTG | 2 cut(s) | 1995, 2316 |
| Mva1269I | GAATGC | 1 cut(s) | 2041 |
| MvnI | CGCG | 1 cut(s) | 28 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 80, 363, 379, 566, 718, 881, 890, 1212 |
| NaeI | GCCGGC | 1 cut(s) | 2791 |
| NciI | CCSGG | 3 cut(s) | 71, 1323, 1324 |
| NdeI | CATATG | 1 cut(s) | 3085 |
| NgoMIV | GCCGGC | 1 cut(s) | 2789 |
| NlaIV | GGNNCC | 4 cut(s) | 1259, 2144, 2530, 2944 |
| NsiI | ATGCAT | 1 cut(s) | 375 |
| NspI | RCATGY | 4 cut(s) | 48, 472, 1096, 1978 |
| PceI | AGGCCT | 1 cut(s) | 1616 |
| PciI | ACATGT | 1 cut(s) | 468 |
| PciSI | GCTCTTC | 2 cut(s) | 1196, 2417 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2249 |
| PctI | GAATGC | 1 cut(s) | 2041 |
| PdiI | GCCGGC | 1 cut(s) | 2791 |
| PdmI | GAANNNNTTC | 1 cut(s) | 22 |
| PfeI | GAWTC | 7 cut(s) | 917, 1604, 1783, 2170, 2630, 2674, 2711 |
| PfoI | TCCNGGA | 2 cut(s) | 912, 2718 |
| PkrI | GCNGC | 8 cut(s) | 196, 559, 1098, 1672, 1916, 2487, 3106, 3113 |
| PmaCI | CACGTG | 1 cut(s) | 1526 |
| PmlI | CACGTG | 1 cut(s) | 1526 |
| Ppu21I | YACGTR | 1 cut(s) | 1526 |
| PpuMI | RGGWCCY | 1 cut(s) | 2142 |
| PscI | ACATGT | 1 cut(s) | 468 |
| Psp124BI | GAGCTC | 1 cut(s) | 785 |
| Psp5II | RGGWCCY | 1 cut(s) | 2142 |
| PspCI | CACGTG | 1 cut(s) | 1526 |
| PspEI | GGTNACC | 1 cut(s) | 1114 |
| PspFI | CCCAGC | 1 cut(s) | 1495 |
| PspN4I | GGNNCC | 4 cut(s) | 1259, 2144, 2530, 2944 |
| PspPI | GGNCC | 7 cut(s) | 81, 155, 1325, 1504, 2034, 2117, 2142 |
| PspPPI | RGGWCCY | 1 cut(s) | 2142 |
| PstI | CTGCAG | 2 cut(s) | 867, 3109 |
| PsuI | RGATCY | 2 cut(s) | 2300, 2327 |
| PvuII | CAGCTG | 2 cut(s) | 1670, 2488 |
| RigI | GGCCGGCC | 1 cut(s) | 2793 |
| RsaI | GTAC | 4 cut(s) | 110, 1296, 1414, 3041 |
| RsaNI | GTAC | 4 cut(s) | 109, 1295, 1413, 3040 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1071, 2046 |
| SacI | GAGCTC | 1 cut(s) | 785 |
| SapI | GCTCTTC | 2 cut(s) | 1196, 2417 |
| SaqAI | TTAA | 9 cut(s) | 435, 474, 1049, 1080, 1749, 2292, 2354, 2576, 2595 |
| SatI | GCNGC | 8 cut(s) | 195, 558, 1097, 1671, 1915, 2486, 3105, 3112 |
| Sau96I | GGNCC | 7 cut(s) | 81, 155, 1325, 1504, 2034, 2117, 2142 |
| SduI | GDGCHC | 5 cut(s) | 603, 785, 1152, 1954, 2533 |
| SfcI | CTRYAG | 2 cut(s) | 863, 3105 |
| SinI | GGWCC | 3 cut(s) | 155, 1504, 2142 |
| SmaI | CCCGGG | 1 cut(s) | 1324 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1071, 2046 |
| SmlI | CTYRAG | 3 cut(s) | 236, 513, 2412 |
| SmoI | CTYRAG | 3 cut(s) | 236, 513, 2412 |
| SseBI | AGGCCT | 1 cut(s) | 1616 |
| SsiI | CCGC | 4 cut(s) | 79, 262, 2092, 2955 |
| SspI | AATATT | 3 cut(s) | 631, 2197, 2613 |
| SspMI | CTAG | 1 cut(s) | 90 |
| SstI | GAGCTC | 1 cut(s) | 785 |
| StuI | AGGCCT | 1 cut(s) | 1616 |
| StyI | CCWWGG | 4 cut(s) | 885, 1628, 1881, 2220 |
| TaaI | ACNGT | 5 cut(s) | 1299, 1378, 1648, 2245, 2469 |
| TaiI | ACGT | 4 cut(s) | 553, 1528, 2137, 2921 |
| TaqI | TCGA | 4 cut(s) | 618, 624, 936, 1101 |
| TatI | WGTACW | 1 cut(s) | 1294 |
| TfiI | GAWTC | 7 cut(s) | 917, 1604, 1783, 2170, 2630, 2674, 2711 |
| Tru1I | TTAA | 9 cut(s) | 435, 474, 1049, 1080, 1749, 2292, 2354, 2576, 2595 |
| Tru9I | TTAA | 9 cut(s) | 435, 474, 1049, 1080, 1749, 2292, 2354, 2576, 2595 |
| TscAI | CASTG | 8 cut(s) | 567, 987, 1217, 2053, 2386, 2500, 2529, 2801 |
| TseI | GCWGC | 8 cut(s) | 194, 557, 1096, 1670, 1914, 2485, 3104, 3111 |
| TspGWI | ACGGA | 2 cut(s) | 917, 2241 |
| TspMI | CCCGGG | 1 cut(s) | 1322 |
| TspRI | CASTG | 8 cut(s) | 567, 987, 1217, 2053, 2386, 2500, 2529, 2801 |
| VpaK11BI | GGWCC | 3 cut(s) | 155, 1504, 2142 |
| XbaI | TCTAGA | 1 cut(s) | 89 |
| XceI | RCATGY | 4 cut(s) | 48, 472, 1096, 1978 |
| XmaI | CCCGGG | 1 cut(s) | 1322 |
| XmiI | GTMKAC | 1 cut(s) | 2471 |
| XmnI | GAANNNNTTC | 1 cut(s) | 22 |
| XspI | CTAG | 1 cut(s) | 90 |
| ZraI | GACGTC | 1 cut(s) | 2919 |
| Zsp2I | ATGCAT | 1 cut(s) | 375 |