Rorug03G0194200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003524
Physical Location & Seq
Forward (+)
17062826 .. 17065677
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0194200.1

Sequence Viewer

Length: 633 bp
ATGGCCATACGACGGGGAGTTAGCCAGCAGCTGCCGATGGGTTCCGCCGTTCTTTACTCTGAATTTATTCTAGTTTCCCAGTCTACCCCAGTAACAGAGGCATTTAATCTAGCTAACGATATTCTACAACAAGGTGTTCGTGGTATCTCTGATATAATCACGATTCCTGGGCTGGCAAATGTCGACTTTAATGATGTAAGGGCTATAATGGTGAATGCGAGTTCTTCATTGATGGGGATAGGAACTGCAACTGTGGAACCTAATTACCATAGTGCCTTTCATGATGGCATCACTGTGGGTAACCTTGTGAAAATTACATTTATGAATGACATGAAGAACATCTCAGTTTATTGGATTAGCATCACTCTAATTGGTACTGGATTCAAACGCCAAGAAGAAAGTGATGGGGAGGCCACACTAGGCACAAGGAGACATTACCCTTGGAATCAATCGAAGACCATCCTCCTTCTCAGAAGGCAGTTCTGTCGAGATTCCCAATTTCTTGAAGAAGAAAGGACACTCACGTTATCGAAGAGCTTGAAATGCTTCCTCTTTATTACCACATCAGCCTCTTCATTACCACATCAGCATCAATCTGAGGGATTTAAGTATGCCTCTGTAGATACTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.38

Weight (kDa)

6.97

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 83, 183
AciI CCGC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 62
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 3 cut(s) 385, 506, 541
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 31, 113, 537
AluI AGCT 3 cut(s) 31, 113, 537
Alw26I GTCTC 1 cut(s) 424
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 2 cut(s) 3, 411
ApeKI GCWGC 2 cut(s) 28, 31
ApoI RAATTY 1 cut(s) 62
Asp700I GAANNNNTTC 2 cut(s) 66, 545
AsuHPI GGTGA 1 cut(s) 223
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 461
BbvI GCAGC 2 cut(s) 18, 40
BccI CCATC 5 cut(s) 31, 226, 278, 398, 467
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciT130I CCWGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 4 cut(s) 71, 110, 419, 627
BfmI CTRYAG 1 cut(s) 618
BisI GCNGC 2 cut(s) 29, 32
BlsI GCNGC 2 cut(s) 30, 33
Bme1390I CCNGG 1 cut(s) 168
BmiI GGNNCC 2 cut(s) 43, 258
BmrFI CCNGG 1 cut(s) 168
BmrI ACTGGG 2 cut(s) 73, 83
BmsI GCATC 3 cut(s) 297, 369, 598
BmuI ACTGGG 2 cut(s) 73, 83
BpiI GAAGAC 1 cut(s) 461
BsaBI GATNNNNATC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 167, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse1I ACTGG 3 cut(s) 79, 89, 382
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 167, 440
BseGI GGATG 1 cut(s) 459
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 357, 484, 588
BseNI ACTGG 3 cut(s) 79, 89, 382
BseXI GCAGC 2 cut(s) 18, 40
BshFI GGCC 2 cut(s) 5, 413
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 2 cut(s) 5, 413
BspACI CCGC 1 cut(s) 45
BspANI GGCC 2 cut(s) 5, 413
BspCNI CTCAG 3 cut(s) 356, 483, 589
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 2 cut(s) 43, 258
BspQI GCTCTTC 1 cut(s) 527
BsrI ACTGG 3 cut(s) 79, 89, 382
BssECI CCNNGG 2 cut(s) 167, 440
BssT1I CCWWGG 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 253, 295
Bst6I CTCTTC 2 cut(s) 527, 577
BstC8I GCNNGC 2 cut(s) 26, 174
BstDEI CTNAG 3 cut(s) 343, 470, 597
BstEII GGTNACC 1 cut(s) 299
BstF5I GGATG 1 cut(s) 459
BstMAI GTCTC 1 cut(s) 424
BstMWI GCNNNNNNNGC 1 cut(s) 543
BstNI CCWGG 1 cut(s) 168
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 618
BstV1I GCAGC 2 cut(s) 18, 40
BstV2I GAAGAC 1 cut(s) 461
BsuRI GGCC 2 cut(s) 5, 413
BtsCI GGATG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 291
Cac8I GCNNGC 2 cut(s) 26, 174
CaiI CAGNNNCTG 1 cut(s) 31
CciI TCATGA 1 cut(s) 280
Csp6I GTAC 1 cut(s) 375
CviAII CATG 2 cut(s) 281, 331
CviJI RGCY 9 cut(s) 5, 24, 31, 113, 172, 203, 413, 537, 569
CviKI_1 RGCY 9 cut(s) 5, 24, 31, 113, 172, 203, 413, 537, 569
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 3 cut(s) 343, 470, 597
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 527, 577
EarI CTCTTC 2 cut(s) 527, 577
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 440
Eco91I GGTNACC 1 cut(s) 299
EcoO65I GGTNACC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 440
FaeI CATG 2 cut(s) 284, 334
FaiI YATR 8 cut(s) 8, 155, 206, 270, 282, 323, 332, 612
FatI CATG 2 cut(s) 280, 330
FblI GTMKAC 2 cut(s) 83, 183
Fnu4HI GCNGC 2 cut(s) 29, 32
FokI GGATG 1 cut(s) 446
Fsp4HI GCNGC 2 cut(s) 29, 32
FspBI CTAG 4 cut(s) 71, 110, 419, 627
GluI GCNGC 2 cut(s) 29, 32
HaeIII GGCC 2 cut(s) 5, 413
Hin1II CATG 2 cut(s) 284, 334
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HinfI GANTC 4 cut(s) 163, 381, 445, 491
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 84, 184
Hpy188I TCNGA 4 cut(s) 61, 151, 473, 598
Hpy188III TCNNGA 4 cut(s) 160, 281, 488, 503
Hpy8I GTNNAC 2 cut(s) 84, 184
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 2 cut(s) 468, 476
HpyCH4III ACNGT 2 cut(s) 253, 295
HpyCH4IV ACGT 1 cut(s) 524
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 543
HpyF3I CTNAG 3 cut(s) 343, 470, 597
HpySE526I ACGT 1 cut(s) 524
Hsp92II CATG 2 cut(s) 284, 334
LguI GCTCTTC 1 cut(s) 527
LpnPI CCDG 7 cut(s) 38, 92, 102, 153, 158, 180, 363
Lsp1109I GCAGC 2 cut(s) 18, 40
LweI GCATC 3 cut(s) 297, 369, 598
MaeI CTAG 4 cut(s) 71, 110, 419, 627
MaeII ACGT 1 cut(s) 524
MaeIII GTNAC 2 cut(s) 91, 299
MboII GAAGA 8 cut(s) 216, 346, 407, 466, 518, 521, 544, 564
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 62, 262, 312, 369, 497
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 7 cut(s) 91, 403, 473, 560, 580, 592, 625
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 2 cut(s) 66, 545
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 105, 189, 606
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 543
NlaIII CATG 2 cut(s) 284, 334
NlaIV GGNNCC 2 cut(s) 43, 258
PagI TCATGA 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 527
PctI GAATGC 1 cut(s) 220
PdmI GAANNNNTTC 2 cut(s) 66, 545
PfeI GAWTC 4 cut(s) 163, 381, 445, 491
PkrI GCNGC 2 cut(s) 30, 33
Psp6I CCWGG 1 cut(s) 166
PspEI GGTNACC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 43, 258
PstNI CAGNNNCTG 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 293
SalI GTCGAC 1 cut(s) 182
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 3 cut(s) 105, 189, 606
SatI GCNGC 2 cut(s) 29, 32
ScrFI CCNGG 1 cut(s) 168
SetI ASST 7 cut(s) 33, 115, 136, 262, 306, 527, 539
SfaNI GCATC 3 cut(s) 297, 369, 598
SfcI CTRYAG 1 cut(s) 618
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 5 cut(s) 62, 262, 312, 369, 497
SsiI CCGC 1 cut(s) 45
SspMI CTAG 4 cut(s) 71, 110, 419, 627
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 440
TaaI ACNGT 2 cut(s) 253, 295
TaiI ACGT 1 cut(s) 527
TaqI TCGA 4 cut(s) 183, 452, 487, 530
TasI AATT 5 cut(s) 62, 262, 312, 369, 497
TfiI GAWTC 4 cut(s) 163, 381, 445, 491
Tru1I TTAA 3 cut(s) 105, 189, 606
Tru9I TTAA 3 cut(s) 105, 189, 606
TscAI CASTG 1 cut(s) 298
TseI GCWGC 2 cut(s) 28, 31
TspDTI ATGAA 5 cut(s) 216, 269, 338, 347, 564
TspRI CASTG 1 cut(s) 298
XapI RAATTY 1 cut(s) 62
XmiI GTMKAC 2 cut(s) 83, 183
XmnI GAANNNNTTC 2 cut(s) 66, 545
XspI CTAG 4 cut(s) 71, 110, 419, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.