Rh3AG245100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003524
Physical Location & Seq
Forward (+)
26040478 .. 26050776
10299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG245100.1

Sequence Viewer

Length: 2799 bp
ATGTGCATTTACAAGAAATTGCTGATAACTTGCAAGGAGCAAATGCCTCTCTTTGCGAGTAGCTTGCTCAGCATTATGCATACCCTTCTGGATCAATCACGCCAAGATGAAATGCAAATTATAGGATGCCAGACTCTTTTTGACTTTGTAAATAATCAGGTGGATGGAACATACATGTTTAACTTAGAAGGATTTATTCCGAAACTCTGTCAGATAGCTCAAGAGCCAGGGGAAGATGAAAGGGCAAATAATTTACGTTGTGCTGCACTGCAAGCCCTTTCTTCAATGGTTTGGTTTATGGGCGAGAATTCTCACATATCAGTCGAGTTCGATAATATTGTCGCAGTGGTCTTGGAAAACTATGGAGGTTTTAAGGAAGCTGAAGGTTCGCAGATTCAGTGGGTGCAGGAAGTTCAAAAAGATGAGGGTCATGTTTCTCCACAAGATGTCAGAATCAGGATTCCTCCTTGGAGTGCCATTGTGGATGCCATAGGCGAACTAAAAGTATCAGAGGAAGATGCCAAGAACCTCTGTTTTTGGTCCAGGGTTTGCCTTCATAACATGGCAAAGTTAGCCAAAGAGGCTACAACAATAAGACGTGTCCTGGAATCTTTGTTCCGCTACTTTGATAACGAAAACTTGTGGTCTCTTGAACATGGGCTTGCCATCTCAGTCTTAAAGGATATACAATTCTTAATGGATAATTCTGGGCAAAATACCCATGTTTTGCTATCCATCTTAATCAAGCATCTCGACCACAAAAATGTCCTTAAACAACCCAACATCCAGCTTGACATAGTGGAGGTAACTACCTCCCTCGCTCTACATGCCAAGGTTGAACCTTCTGTAGCAATAATTGGGGCTTTAAGTGATGCCTTGAGGCATTTGAGAAAGAGCATCCACTGCTCTCTGGATGATGCCAATCTCGGGACAGATGTCATCAAATGGAACAAATGCTTTAGAGAAGAGGTGGATAAGTGCCTTGTACAGCTATCATATAAGATCGGAGAACCAGGACCAATTCTTGATGCTATGGCTGTTATGCTGGAGAATATTTCAACTATTACAGTGATAGCCAGAACTACAATTGCTGCTATTTATCGTACTGCTCAAATTGTAGCTTCCTTACCAAATTTGTCCTATCAAAACAAGGCTTTCCCAGAGGCATTGTTTCACCAATTACTCCCAGCTATGGTTCATCCAGACCATGAAACACGTGTTGGAGCTCATCGCATCTTCTCTGTTGTTCTTGTGCCATCTTCGGTTTCGCCTAATCTATTCTCATCTAATACCGGGACAAAAAGGGCCTTTGATCTTCACAGGACACTCTCAAGAACTGTCTCTGTGTTTTCTTCTTCAGCTGCCCTTTTTGAGAAGCTGAGGAGAGAGAAAATTTCCTCACGGGAAAGTATTTGTGAAGAAGATGAAAACATTGTTCCGGAGGGGGAAGAAAGAGATACCAATAATGGGTTTCTGAGCAGATTGAAGTCATCTTATAGTCGGACATATAGTATGAAAAGCTTGCCTGCACCTTCAACACCAAATGAAAATTCCATGAGCAATACTAAGGAACTTGAGGCTAATTCCCTCAGGTTGAGCAGCCACCAGATAACTCTCTTGCTTTTATCAATTTCGGCACAATCCATCTCTCCTGGGAACATGCCTGAAAACTATGAAGCAATTGCTCATACCTACAGCCTTGTATTACTCTTCTCTCGGGCCAAGAATTCCTGCATTGAGGTTCTTGTTCGAAGTTTTCAGCTGGCATTTTCCTTACAAAATATTTCTCTTATTGAAGGAGGGCCATTGCCACCATCGCGTCGCAGGTCCCTGTTTACCCTGGCAACTTCAATGATTCTATTTTTATCAAAAGCATACAATTTTTTCTCTCTGGTTGATAGAGTCAAGGCAGCACTGACGGATAAAAAGGTTGATCCGTTCCTACATCTGGTTGAAGAGTACAAGTTACAGGCTGTTAAGGCTGGACCTGACCATCCCACATATCTCTATGGATCCAAGGAAGATGACAATTTGGCATTAAAATCTCTGTCACAAATAGTGATTACTGAAGAGCAGAGTAGGGAATCATTTGCTTCTGCAATTGTGAAGAGCTTGGACAATTTGTCAGAATCTGAATTGTCTTCTATAAAGGAGGAGTTGCTCAATGATTTCATACCTGATGATATCTGTCCACTAGGAGCACAATTGTTCACGGAAGCTCCGAAAAAACTTTATCAGGTTGATTTCACAAATAGCGAATCTATTAAGGAGGATGCTCCATTATTTTCAATGGAAGATGATTCTGTTCCAGGCTCATCTAATAGCCACCAGAATAGTGTAGAGTTGTCTATGGATCTTCCCATTCTTTTGAATGTTAATCAACTAATGGAATCGGTCCAGGAGACAGCAAATCAAGTTGGAAGGTTTTCAGTCTCAACTAAACCTGATGTATCTTACAAGGAAATGGCCGGCCACTGTGAGGCACTTCTGCTAGGAAAGCAGCAGAAGATGTCCAAGTTCATGAGTTCTCAAAAGAAAGAGGAATGTTTGATGAACTTCTCTTTACAAAATCATAATGACTACCTGCAAGAGACAACGCCCGATTCTTATATAGGCATTGGTTCCCATAGGAGCGGTAATGCTTTTGCTGACCACACTGCCACTTCATACAAACTACCGCCAACCCCAGGCCATGTCCCAATGCTTTGTGCAGCGGAATACCAGCATAATCCCCACTCCTCCTTCAGACTACCAGCCTCAAATCCATATGATAACTTCTTAAAAGCTGCCGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

932

Amino Acids

104.09

Weight (kDa)

5.58

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFR3_ARM PF21052 2 - 60 1.9e-09 EFR3, armadillo repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1815, 2592
AccBSI CCGCTC 1 cut(s) 2634
AccII CGCG 1 cut(s) 1819
AccIII TCCGGA 1 cut(s) 1438
AciI CCGC 4 cut(s) 619, 2634, 2678, 2714
AclWI GGATC 5 cut(s) 99, 1928, 2007, 2020, 2361
AcoI YGGCCR 2 cut(s) 2466, 2470
AcsI RAATTY 5 cut(s) 307, 1132, 1392, 1549, 1726
AcuI CTGAAG 4 cut(s) 402, 1341, 2088, 2728
AcvI CACGTG 1 cut(s) 1217
AfaI GTAC 3 cut(s) 987, 1105, 1961
AfiI CCNNNNNNNGG 6 cut(s) 927, 1192, 1467, 1948, 2479, 2687
AflIII ACRYGT 4 cut(s) 174, 598, 1214, 1216
AhdI GACNNNNNGTC 1 cut(s) 2122
AjiI CACGTC 1 cut(s) 599
AjnI CCWGG 9 cut(s) 226, 542, 603, 1012, 1651, 1839, 2308, 2397, 2686
AjuI GAANNNNNNNTTGG 4 cut(s) 1203, 1235, 1534, 1566
AloI GAACNNNNNNTCC 2 cut(s) 599, 631
Alw21I GWGCWC 2 cut(s) 1228, 2203
Alw26I GTCTC 5 cut(s) 651, 1345, 2396, 2437, 2585
AlwI GGATC 5 cut(s) 99, 1928, 2007, 2020, 2361
AlwNI CAGNNNCTG 1 cut(s) 2132
Ama87I CYCGRG 2 cut(s) 926, 1716
Aor13HI TCCGGA 1 cut(s) 1438
AoxI GGCC 6 cut(s) 1305, 1719, 1802, 2466, 2470, 2689
ApeKI GCWGC 8 cut(s) 263, 1091, 1361, 1599, 1910, 2500, 2711, 2786
ApoI RAATTY 5 cut(s) 307, 1132, 1392, 1549, 1726
Asp700I GAANNNNTTC 1 cut(s) 2425
AspS9I GGNCC 8 cut(s) 540, 1016, 1305, 1719, 1802, 1827, 1985, 2395
AsuC2I CCSGG 1 cut(s) 1294
AsuHPI GGTGA 1 cut(s) 1166
AsuII TTCGAA 1 cut(s) 1750
AvaI CYCGRG 2 cut(s) 926, 1716
AvaII GGWCC 5 cut(s) 540, 1016, 1827, 1985, 2395
AxyI CCTNAGG 1 cut(s) 1589
BamHI GGATCC 1 cut(s) 2012
BanII GRGCYC 1 cut(s) 1228
BbrPI CACGTG 1 cut(s) 1217
BbsI GAAGAC 1 cut(s) 2133
Bbv12I GWGCWC 2 cut(s) 1228, 2203
BbvCI CCTCAGC 1 cut(s) 1379
BbvI GCAGC 8 cut(s) 250, 1078, 1348, 1611, 1922, 2512, 2723, 2773
BccI CCATC 7 cut(s) 158, 674, 743, 1264, 1652, 1822, 2001
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BciT130I CCWGG 9 cut(s) 228, 544, 605, 1014, 1653, 1841, 2310, 2399, 2688
BcnI CCSGG 1 cut(s) 1294
BcoDI GTCTC 5 cut(s) 651, 1345, 2396, 2437, 2585
BfaI CTAG 2 cut(s) 2195, 2492
BfmI CTRYAG 2 cut(s) 846, 1693
BfuAI ACCTGC 2 cut(s) 1815, 2592
BglI GCCNNNNNGGC 1 cut(s) 581
BisI GCNGC 8 cut(s) 264, 1092, 1362, 1600, 1911, 2501, 2712, 2787
BlpI GCTNAGC 1 cut(s) 68
BlsI GCNGC 8 cut(s) 265, 1093, 1363, 1601, 1912, 2502, 2713, 2788
Bme18I GGWCC 5 cut(s) 540, 1016, 1827, 1985, 2395
BmeRI GACNNNNNGTC 1 cut(s) 2122
BmeT110I CYCGRG 2 cut(s) 926, 1716
BmgBI CACGTC 1 cut(s) 599
BmgT120I GGNCC 8 cut(s) 540, 1016, 1305, 1719, 1802, 1827, 1985, 2395
BmiI GGNNCC 3 cut(s) 1829, 2014, 2623
BoxI GACNNNNGTC 1 cut(s) 935
BpiI GAAGAC 1 cut(s) 2133
BpmI CTGGAG 1 cut(s) 1067
Bpu10I CCTNAGC 1 cut(s) 1379
Bpu1102I GCTNAGC 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 1750
BpuEI CTTGAG 4 cut(s) 204, 898, 1315, 1595
BpuMI CCSGG 1 cut(s) 1294
BsaAI YACGTR 1 cut(s) 1217
BsaBI GATNNNNATC 1 cut(s) 921
BsaI GGTCTC 1 cut(s) 651
BsaJI CCNNGG 8 cut(s) 227, 467, 543, 831, 1652, 1839, 2016, 2686
BsaWI WCCGGW 1 cut(s) 1438
BsaXI ACNNNNNCTCC 2 cut(s) 2203, 2233
Bsc4I CCNNNNNNNGG 6 cut(s) 927, 1192, 1467, 1948, 2479, 2687
Bse118I RCCGGY 2 cut(s) 2468, 2789
Bse21I CCTNAGG 1 cut(s) 1589
Bse3DI GCAATG 1 cut(s) 1805
Bse8I GATNNNNATC 1 cut(s) 921
BseAI TCCGGA 1 cut(s) 1438
BseBI CCWGG 9 cut(s) 228, 544, 605, 1014, 1653, 1841, 2310, 2399, 2688
BseDI CCNNGG 8 cut(s) 227, 467, 543, 831, 1652, 1839, 2016, 2686
BseGI GGATG 9 cut(s) 131, 169, 490, 783, 897, 919, 1198, 1993, 2278
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 6 cut(s) 927, 1192, 1467, 1948, 2479, 2687
BseMI GCAATG 1 cut(s) 1805
BseMII CTCAG 5 cut(s) 82, 684, 1370, 1466, 1603
BseRI GAGGAG 3 cut(s) 1396, 2168, 2728
BseXI GCAGC 8 cut(s) 250, 1078, 1348, 1611, 1922, 2512, 2723, 2773
BseYI CCCAGC 1 cut(s) 1186
BsgI GTGCAG 4 cut(s) 249, 425, 1512, 2730
Bsh1236I CGCG 1 cut(s) 1819
BshFI GGCC 6 cut(s) 1307, 1721, 1804, 2468, 2472, 2691
BsiHKAI GWGCWC 2 cut(s) 1228, 2203
BsiHKCI CYCGRG 2 cut(s) 926, 1716
BsiSI CCGG 4 cut(s) 1293, 1439, 2469, 2790
BslFI GGGAC 4 cut(s) 943, 1309, 1813, 2681
BslI CCNNNNNNNGG 6 cut(s) 927, 1192, 1467, 1948, 2479, 2687
BsmAI GTCTC 5 cut(s) 651, 1345, 2396, 2437, 2585
BsmFI GGGAC 4 cut(s) 943, 1309, 1813, 2681
BsnI GGCC 6 cut(s) 1307, 1721, 1804, 2468, 2472, 2691
Bso31I GGTCTC 1 cut(s) 651
BsoBI CYCGRG 2 cut(s) 926, 1716
Bsp119I TTCGAA 1 cut(s) 1750
Bsp1286I GDGCHC 2 cut(s) 1228, 2203
Bsp13I TCCGGA 1 cut(s) 1438
Bsp1407I TGTACA 1 cut(s) 985
Bsp143I GATC 6 cut(s) 91, 1002, 1312, 1933, 2012, 2353
Bsp1720I GCTNAGC 1 cut(s) 68
BspACI CCGC 4 cut(s) 619, 2634, 2678, 2714
BspANI GGCC 6 cut(s) 1307, 1721, 1804, 2468, 2472, 2691
BspCNI CTCAG 5 cut(s) 81, 683, 1371, 1467, 1602
BspEI TCCGGA 1 cut(s) 1438
BspFNI CGCG 1 cut(s) 1819
BspHI TCATGA 1 cut(s) 2520
BspLI GGNNCC 3 cut(s) 1829, 2014, 2623
BspMI ACCTGC 2 cut(s) 1815, 2592
BspPI GGATC 5 cut(s) 99, 1928, 2007, 2020, 2361
BspQI GCTCTTC 2 cut(s) 2064, 2102
BspT104I TTCGAA 1 cut(s) 1750
BspTNI GGTCTC 1 cut(s) 651
BsrBI CCGCTC 1 cut(s) 2634
BsrDI GCAATG 1 cut(s) 1805
BsrFI RCCGGY 2 cut(s) 2468, 2789
BsrGI TGTACA 1 cut(s) 985
BssAI RCCGGY 2 cut(s) 2468, 2789
BssECI CCNNGG 8 cut(s) 227, 467, 543, 831, 1652, 1839, 2016, 2686
BssMI GATC 6 cut(s) 91, 1002, 1312, 1933, 2012, 2353
BssT1I CCWWGG 3 cut(s) 467, 831, 2016
Bst2UI CCWGG 9 cut(s) 228, 544, 605, 1014, 1653, 1841, 2310, 2399, 2688
Bst4CI ACNGT 3 cut(s) 1069, 1339, 2477
Bst6I CTCTTC 5 cut(s) 960, 1715, 1950, 2064, 2102
BstAPI GCANNNNNTGC 1 cut(s) 903
BstAUI TGTACA 1 cut(s) 985
BstBAI YACGTR 1 cut(s) 1217
BstBI TTCGAA 1 cut(s) 1750
BstC8I GCNNGC 7 cut(s) 65, 273, 663, 1523, 1527, 1764, 2470
BstDEI CTNAG 7 cut(s) 68, 184, 670, 1379, 1475, 1566, 1589
BstF5I GGATG 9 cut(s) 131, 169, 490, 783, 897, 919, 1198, 1993, 2278
BstFNI CGCG 1 cut(s) 1819
BstKTI GATC 6 cut(s) 94, 1005, 1315, 1936, 2015, 2356
BstMAI GTCTC 5 cut(s) 651, 1345, 2396, 2437, 2585
BstMBI GATC 6 cut(s) 91, 1002, 1312, 1933, 2012, 2353
BstMWI GCNNNNNNNGC 9 cut(s) 69, 272, 572, 581, 827, 903, 1816, 1979, 2497
BstNI CCWGG 9 cut(s) 228, 544, 605, 1014, 1653, 1841, 2310, 2399, 2688
BstNSI RCATGY 3 cut(s) 178, 830, 1663
BstPAI GACNNNNGTC 1 cut(s) 935
BstSFI CTRYAG 2 cut(s) 846, 1693
BstUI CGCG 1 cut(s) 1819
BstV1I GCAGC 8 cut(s) 250, 1078, 1348, 1611, 1922, 2512, 2723, 2773
BstV2I GAAGAC 1 cut(s) 2133
BstX2I RGATCY 2 cut(s) 2012, 2353
BstYI RGATCY 2 cut(s) 2012, 2353
Bsu36I CCTNAGG 1 cut(s) 1589
BsuRI GGCC 6 cut(s) 1307, 1721, 1804, 2468, 2472, 2691
BtgZI GCGATG 2 cut(s) 1214, 1800
BtrI CACGTC 1 cut(s) 599
BtsCI GGATG 9 cut(s) 131, 169, 490, 783, 897, 919, 1198, 1993, 2278
BtsI GCAGTG 4 cut(s) 266, 351, 901, 2655
BtsIMutI CAGTG 8 cut(s) 266, 351, 404, 901, 1074, 1913, 2473, 2655
BveI ACCTGC 2 cut(s) 1815, 2592
Cac8I GCNNGC 7 cut(s) 65, 273, 663, 1523, 1527, 1764, 2470
CaiI CAGNNNCTG 1 cut(s) 2132
CciI TCATGA 1 cut(s) 2520
Cfr10I RCCGGY 2 cut(s) 2468, 2789
Cfr13I GGNCC 8 cut(s) 540, 1016, 1305, 1719, 1802, 1827, 1985, 2395
CseI GACGC 1 cut(s) 1808
Csp6I GTAC 3 cut(s) 986, 1104, 1960
CviQI GTAC 3 cut(s) 986, 1104, 1960
DdeI CTNAG 7 cut(s) 68, 184, 670, 1379, 1475, 1566, 1589
DpnI GATC 6 cut(s) 93, 1004, 1314, 1935, 2014, 2355
DpnII GATC 6 cut(s) 91, 1002, 1312, 1933, 2012, 2353
DriI GACNNNNNGTC 1 cut(s) 2122
EaeI YGGCCR 2 cut(s) 2466, 2470
Eam1104I CTCTTC 5 cut(s) 960, 1715, 1950, 2064, 2102
Eam1105I GACNNNNNGTC 1 cut(s) 2122
EarI CTCTTC 5 cut(s) 960, 1715, 1950, 2064, 2102
Ecl136II GAGCTC 1 cut(s) 1226
Eco130I CCWWGG 3 cut(s) 467, 831, 2016
Eco24I GRGCYC 1 cut(s) 1228
Eco31I GGTCTC 1 cut(s) 651
Eco32I GATATC 1 cut(s) 2185
Eco47I GGWCC 5 cut(s) 540, 1016, 1827, 1985, 2395
Eco53kI GAGCTC 1 cut(s) 1226
Eco57I CTGAAG 4 cut(s) 402, 1341, 2088, 2728
Eco72I CACGTG 1 cut(s) 1217
Eco81I CCTNAGG 1 cut(s) 1589
Eco88I CYCGRG 2 cut(s) 926, 1716
EcoICRI GAGCTC 1 cut(s) 1226
EcoO109I RGGNCCY 2 cut(s) 1305, 1827
EcoRI GAATTC 2 cut(s) 307, 1726
EcoRII CCWGG 9 cut(s) 226, 542, 603, 1012, 1651, 1839, 2308, 2397, 2686
EcoRV GATATC 1 cut(s) 2185
EcoT14I CCWWGG 3 cut(s) 467, 831, 2016
EcoT22I ATGCAT 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 1228
ErhI CCWWGG 3 cut(s) 467, 831, 2016
FaqI GGGAC 4 cut(s) 943, 1309, 1813, 2681
FauNDI CATATG 1 cut(s) 2767
Fnu4HI GCNGC 8 cut(s) 264, 1092, 1362, 1600, 1911, 2501, 2712, 2787
FokI GGATG 9 cut(s) 138, 176, 497, 770, 884, 926, 1185, 1980, 2285
FriOI GRGCYC 1 cut(s) 1228
FseI GGCCGGCC 1 cut(s) 2472
Fsp4HI GCNGC 8 cut(s) 264, 1092, 1362, 1600, 1911, 2501, 2712, 2787
FspBI CTAG 2 cut(s) 2195, 2492
GluI GCNGC 8 cut(s) 264, 1092, 1362, 1600, 1911, 2501, 2712, 2787
GsaI CCCAGC 1 cut(s) 1190
GsuI CTGGAG 1 cut(s) 1067
HaeIII GGCC 6 cut(s) 1307, 1721, 1804, 2468, 2472, 2691
HapII CCGG 4 cut(s) 1293, 1439, 2469, 2790
HgaI GACGC 1 cut(s) 1808
HindIII AAGCTT 1 cut(s) 1519
HpaII CCGG 4 cut(s) 1293, 1439, 2469, 2790
HphI GGTGA 1 cut(s) 1166
Hpy166II GTNNAC 3 cut(s) 1836, 2192, 2211
Hpy8I GTNNAC 3 cut(s) 1836, 2192, 2211
Hpy99I CGWCG 1 cut(s) 1824
HpyAV CCTTC 9 cut(s) 95, 182, 377, 563, 852, 1542, 1790, 2415, 2752
HpyCH4III ACNGT 3 cut(s) 1069, 1339, 2477
HpyCH4IV ACGT 3 cut(s) 256, 598, 1216
HpyF10VI GCNNNNNNNGC 9 cut(s) 69, 272, 572, 581, 827, 903, 1816, 1979, 2497
HpyF3I CTNAG 7 cut(s) 68, 184, 670, 1379, 1475, 1566, 1589
HpySE526I ACGT 3 cut(s) 256, 598, 1216
Kpn2I TCCGGA 1 cut(s) 1438
KroI GCCGGC 1 cut(s) 2468
KroNI GCCGGC 1 cut(s) 2470
Kzo9I GATC 6 cut(s) 91, 1002, 1312, 1933, 2012, 2353
LguI GCTCTTC 2 cut(s) 2064, 2102
LmnI GCTCC 6 cut(s) 37, 1223, 2198, 2224, 2281, 2631
Lsp1109I GCAGC 8 cut(s) 250, 1078, 1348, 1611, 1922, 2512, 2723, 2773
MaeI CTAG 2 cut(s) 2195, 2492
MaeII ACGT 3 cut(s) 256, 598, 1216
MaeIII GTNAC 3 cut(s) 805, 1965, 2049
MalI GATC 6 cut(s) 93, 1004, 1314, 1935, 2014, 2355
MbiI CCGCTC 1 cut(s) 2634
MboI GATC 6 cut(s) 91, 1002, 1312, 1933, 2012, 2353
MfeI CAATTG 4 cut(s) 1086, 1680, 2100, 2204
MflI RGATCY 2 cut(s) 2012, 2353
MhlI GDGCHC 2 cut(s) 1228, 2203
MlyI GAGTC 2 cut(s) 127, 1911
MmeI TCCRAC 3 cut(s) 1201, 1481, 2398
Mph1103I ATGCAT 1 cut(s) 81
MroI TCCGGA 1 cut(s) 1438
MroNI GCCGGC 1 cut(s) 2468
MroXI GAANNNNTTC 1 cut(s) 2425
MslI CAYNNNNRTG 1 cut(s) 762
MspA1I CMGCKG 3 cut(s) 1361, 1762, 2714
MspI CCGG 4 cut(s) 1293, 1439, 2469, 2790
MunI CAATTG 4 cut(s) 1086, 1680, 2100, 2204
MvaI CCWGG 9 cut(s) 228, 544, 605, 1014, 1653, 1841, 2310, 2399, 2688
MvnI CGCG 1 cut(s) 1819
MwoI GCNNNNNNNGC 9 cut(s) 69, 272, 572, 581, 827, 903, 1816, 1979, 2497
NaeI GCCGGC 1 cut(s) 2470
NciI CCSGG 1 cut(s) 1294
NdeI CATATG 1 cut(s) 2767
NdeII GATC 6 cut(s) 91, 1002, 1312, 1933, 2012, 2353
NgoMIV GCCGGC 1 cut(s) 2468
NlaIV GGNNCC 3 cut(s) 1829, 2014, 2623
NmuCI GTSAC 1 cut(s) 2049
NsiI ATGCAT 1 cut(s) 81
NspI RCATGY 3 cut(s) 178, 830, 1663
NspV TTCGAA 1 cut(s) 1750
PagI TCATGA 1 cut(s) 2520
PciI ACATGT 1 cut(s) 174
PciSI GCTCTTC 2 cut(s) 2064, 2102
PcsI WCGNNNNNNNCGW 1 cut(s) 2219
PdiI GCCGGC 1 cut(s) 2470
PdmI GAANNNNTTC 1 cut(s) 2425
PfoI TCCNGGA 2 cut(s) 603, 2397
PkrI GCNGC 8 cut(s) 265, 1093, 1363, 1601, 1912, 2502, 2713, 2788
PleI GAGTC 2 cut(s) 127, 1910
PmaCI CACGTG 1 cut(s) 1217
PmlI CACGTG 1 cut(s) 1217
PpsI GAGTC 2 cut(s) 127, 1910
Ppu21I YACGTR 1 cut(s) 1217
PpuMI RGGWCCY 1 cut(s) 1827
PscI ACATGT 1 cut(s) 174
PshAI GACNNNNGTC 1 cut(s) 935
Psp124BI GAGCTC 1 cut(s) 1228
Psp5II RGGWCCY 1 cut(s) 1827
Psp6I CCWGG 9 cut(s) 226, 542, 603, 1012, 1651, 1839, 2308, 2397, 2686
PspCI CACGTG 1 cut(s) 1217
PspFI CCCAGC 1 cut(s) 1186
PspGI CCWGG 9 cut(s) 226, 542, 603, 1012, 1651, 1839, 2308, 2397, 2686
PspN4I GGNNCC 3 cut(s) 1829, 2014, 2623
PspPI GGNCC 8 cut(s) 540, 1016, 1305, 1719, 1802, 1827, 1985, 2395
PspPPI RGGWCCY 1 cut(s) 1827
PstNI CAGNNNCTG 1 cut(s) 2132
PsuI RGATCY 2 cut(s) 2012, 2353
PvuII CAGCTG 2 cut(s) 1361, 1762
RigI GGCCGGCC 1 cut(s) 2472
RsaI GTAC 3 cut(s) 987, 1105, 1961
RsaNI GTAC 3 cut(s) 986, 1104, 1960
RseI CAYNNNNRTG 1 cut(s) 762
SacI GAGCTC 1 cut(s) 1228
SapI GCTCTTC 2 cut(s) 2064, 2102
SatI GCNGC 8 cut(s) 264, 1092, 1362, 1600, 1911, 2501, 2712, 2787
Sau3AI GATC 6 cut(s) 91, 1002, 1312, 1933, 2012, 2353
Sau96I GGNCC 8 cut(s) 540, 1016, 1305, 1719, 1802, 1827, 1985, 2395
SchI GAGTC 2 cut(s) 127, 1911
SduI GDGCHC 2 cut(s) 1228, 2203
SfcI CTRYAG 2 cut(s) 846, 1693
SfuI TTCGAA 1 cut(s) 1750
SinI GGWCC 5 cut(s) 540, 1016, 1827, 1985, 2395
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 4 cut(s) 219, 877, 1330, 1574
SmoI CTYRAG 4 cut(s) 219, 877, 1330, 1574
SsiI CCGC 4 cut(s) 619, 2634, 2678, 2714
SspI AATATT 3 cut(s) 337, 1054, 1783
SspMI CTAG 2 cut(s) 2195, 2492
SstI GAGCTC 1 cut(s) 1228
StyI CCWWGG 3 cut(s) 467, 831, 2016
TaaI ACNGT 3 cut(s) 1069, 1339, 2477
TaiI ACGT 3 cut(s) 259, 601, 1219
TaqI TCGA 4 cut(s) 324, 330, 753, 1750
TaqII GACCGA 1 cut(s) 2383
TatI WGTACW 2 cut(s) 985, 1959
TscAI CASTG 8 cut(s) 273, 351, 404, 908, 1074, 1920, 2480, 2662
TseFI GTSAC 1 cut(s) 2049
TseI GCWGC 8 cut(s) 263, 1091, 1361, 1599, 1910, 2500, 2711, 2786
Tsp45I GTSAC 1 cut(s) 2049
TspGWI ACGGA 3 cut(s) 1926, 1934, 2228
TspRI CASTG 8 cut(s) 273, 351, 404, 908, 1074, 1920, 2480, 2662
VpaK11BI GGWCC 5 cut(s) 540, 1016, 1827, 1985, 2395
XapI RAATTY 5 cut(s) 307, 1132, 1392, 1549, 1726
XceI RCATGY 3 cut(s) 178, 830, 1663
XmnI GAANNNNTTC 1 cut(s) 2425
XspI CTAG 2 cut(s) 2195, 2492
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.