Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003524

Physical Location & Seq

Genomic Coordinates Forward (+)

27539670 .. 27540317

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG276400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAAGGAGAGAAGAGACCCAATCAAACCCACCTCCACCGTCCCATCCCCAACCCTTCAATCCCACTCCTTCCTTCCTCGCCAACCAAGTTTAAATCTTTCCCTTTTAAGTCTCCTTCGATTTTGGGTTCGATTAATTTATTATTGGTTAGTTAACATGGATATCGAGGAACTATTGGGCCGAAACCGACCGGCGACAATCAAGGCGAGGAGTGCGATTTACGTCTGGGGATATAACCAGTCCGGCCAGACTGGTCGGAAGGGGAGAGAGCGCCAGTTGAGGATCCCGAAGCAGCTCTCGCCGGCTTTGGTTGCCCCGCCGGAGCTAATTCGCGCTGGCTGGACATTGCTTGCGGCCGCGAGCATACCGCAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

RCC1

Protein Analysis

125

Amino Acids

14.27

Weight (kDa)

11.15

Isoelectric Point (pI)

61.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41830 AT2G41830
fragaria_vesca	FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620
malus_domestica	MD12G1077200.v1.1 MD14G1070800.v1.1
prunus_persica	Prupe.7G063500_v2.0.a1 Prupe.7G063500_v2.0.a1
pyrus_communis	pycom12g06250 pycom14g06020
rosa_chinensis	RchiOBHm_Chr3g0481871
rosa_laevigata	RLG00000023380
rosa_multiflora	Rmu_ssc0000267.1_g000017
rosa_roxburghii	Rroxscaffold_6G00399810 Rroxscaffold_6G00400140
rosa_rugosa	Rorug03G0194100 Rorug03G0194200
rosa_samantha	Rh1AG268100 Rh3AG245100 Rh3BG280300 Rh3CG275200 Rh3CG275600 Rh3CG276300 Rh3CG276400 Rh4CG314400
rosa_wichuraiana	Rw0G004350 Rw3G021880 Rw3G021900 Rw3G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	333, 359
AciI	CCGC	4 cut(s)	317, 353, 357, 368
AclWI	GGATC	2 cut(s)	277, 290
AcoI	YGGCCR	2 cut(s)	244, 354
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	3 cut(s)	295, 325, 373
AluI	AGCT	3 cut(s)	295, 325, 373
Alw26I	GTCTC	2 cut(s)	9, 116
AlwI	GGATC	2 cut(s)	277, 290
AoxI	GGCC	3 cut(s)	178, 244, 354
ApeKI	GCWGC	2 cut(s)	292, 370
AseI	ATTAAT	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	273, 335
AspS9I	GGNCC	1 cut(s)	178
BamHI	GGATCC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	9, 116
BfmI	CTRYAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	274
BisI	GCNGC	4 cut(s)	293, 354, 357, 371
BlsI	GCNGC	4 cut(s)	294, 355, 358, 372
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	9
Bse118I	RCCGGY	2 cut(s)	190, 301
Bse1I	ACTGG	3 cut(s)	238, 256, 274
Bse3DI	GCAATG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	344
BseNI	ACTGG	3 cut(s)	238, 256, 274
BseRI	GAGGAG	1 cut(s)	223
BseX3I	CGGCCG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	2 cut(s)	333, 359
Bsh1285I	CGRYCG	2 cut(s)	191, 357
BshFI	GGCC	3 cut(s)	180, 246, 356
BsiEI	CGRYCG	2 cut(s)	191, 357
BsiSI	CCGG	4 cut(s)	191, 243, 302, 320
BslFI	GGGAC	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	9, 116
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	3 cut(s)	180, 246, 356
Bso31I	GGTCTC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	4 cut(s)	317, 353, 357, 368
BspANI	GGCC	3 cut(s)	180, 246, 356
BspFNI	CGCG	2 cut(s)	333, 359
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	277, 290
BspTNI	GGTCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	344
BsrFI	RCCGGY	2 cut(s)	190, 301
BsrI	ACTGG	3 cut(s)	238, 256, 274
BssAI	RCCGGY	2 cut(s)	190, 301
BssMI	GATC	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	7
BstC8I	GCNNGC	4 cut(s)	303, 337, 351, 361
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	2 cut(s)	333, 359
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	2 cut(s)	273, 335
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	2 cut(s)	9, 116
BstMBI	GATC	1 cut(s)	282
BstMCI	CGRYCG	2 cut(s)	191, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 298, 311
BstSFI	CTRYAG	1 cut(s)	374
BstUI	CGCG	2 cut(s)	333, 359
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BstZI	CGGCCG	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	180, 246, 356
BtsCI	GGATG	1 cut(s)	44
Cac8I	GCNNGC	4 cut(s)	303, 337, 351, 361
CciNI	GCGGCCGC	1 cut(s)	354
CfoI	GCGC	2 cut(s)	273, 335
Cfr10I	RCCGGY	2 cut(s)	190, 301
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	8 cut(s)	180, 246, 295, 305, 325, 339, 356, 373
CviKI_1	RGCY	8 cut(s)	180, 246, 295, 305, 325, 339, 356, 373
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DraI	TTTAAA	1 cut(s)	93
EaeI	YGGCCR	2 cut(s)	244, 354
EagI	CGGCCG	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
EclXI	CGGCCG	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	163
FaeI	CATG	1 cut(s)	160
FaiI	YATR	3 cut(s)	158, 234, 365
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	156
FauI	CCCGC	1 cut(s)	324
Fnu4HI	GCNGC	4 cut(s)	293, 354, 357, 371
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	4 cut(s)	293, 354, 357, 371
GlaI	GCGC	2 cut(s)	272, 334
GluI	GCNGC	4 cut(s)	293, 354, 357, 371
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	180, 246, 356
HapII	CCGG	4 cut(s)	191, 243, 302, 320
HhaI	GCGC	2 cut(s)	273, 335
Hin1II	CATG	1 cut(s)	160
Hin6I	GCGC	2 cut(s)	271, 333
HinP1I	GCGC	2 cut(s)	271, 333
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaI	GTTAAC	1 cut(s)	154
HpaII	CCGG	4 cut(s)	191, 243, 302, 320
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	5 cut(s)	65, 79, 83, 125, 253
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 298, 311
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	160
HspAI	GCGC	2 cut(s)	271, 333
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	1 cut(s)	304
MaeII	ACGT	1 cut(s)	222
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	1 cut(s)	24
MflI	RGATCY	1 cut(s)	282
MluCI	AATT	2 cut(s)	135, 327
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	5 cut(s)	43, 87, 160, 201, 273
MroNI	GCCGGC	1 cut(s)	301
MseI	TTAA	4 cut(s)	92, 107, 134, 153
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	4 cut(s)	191, 243, 302, 320
MvnI	CGCG	2 cut(s)	333, 359
MwoI	GCNNNNNNNGC	3 cut(s)	212, 298, 311
NaeI	GCCGGC	1 cut(s)	303
NdeII	GATC	1 cut(s)	282
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	284
NotI	GCGGCCGC	1 cut(s)	354
PdiI	GCCGGC	1 cut(s)	303
PkrI	GCNGC	4 cut(s)	294, 355, 358, 372
PshBI	ATTAAT	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	282
PvuII	CAGCTG	1 cut(s)	373
SaqAI	TTAA	4 cut(s)	92, 107, 134, 153
SatI	GCNGC	4 cut(s)	293, 354, 357, 371
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	178
SetI	ASST	5 cut(s)	35, 225, 297, 327, 375
SfcI	CTRYAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	135, 327
SsiI	CCGC	4 cut(s)	317, 353, 357, 368
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	3 cut(s)	118, 130, 165
TasI	AATT	2 cut(s)	135, 327
TauI	GCSGC	2 cut(s)	356, 359
Tru1I	TTAA	4 cut(s)	92, 107, 134, 153
Tru9I	TTAA	4 cut(s)	92, 107, 134, 153
TseI	GCWGC	2 cut(s)	292, 370
TspDTI	ATGAA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.