Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003524

Physical Location & Seq

Genomic Coordinates Forward (+)

26657066 .. 26659310

Gene Structure 2245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAAGATGATTCTGTTCCAGGCTCATCTAATAGCCACCAGAACAGTGTAGAGTTGTCTATGGATCTTCCCATTCTTTTGAATGTTAATCAACTAATGGAATCGGTCCAGGAGACAGCAAATCAAGTTGGAAGGTTTTCAGTCTCAACTAAACCTGATGTATCTTACAAGGAAATGGCCGGCCACTGTGAGGCACTTCTGCTAGGAACGCAGCAGAAGATGTCCAAGTTTATGAGTTCTCAAAAGAAAGAGGAATGTTTGATGAACTTCTCTTTACAAAATCACAATGACGACCTGCAAGAGACGACACCTGATTCTTATATTGACGTGGGTTCCCATAGGGAGAGAAGAGACCCAATCAAACCCACCTCCACCGTCCCATCCCCAACCCTTCAATCCCACTCCTTCCTTCCTCGCCAACCAATTAACATGGATATCGAGGAACTATTGGGCCGAAACCGACCGGCGACAATCAAGGCGAGGAGTGTGATTTACGTCTGGGGATATAACCAGTCCGGCCAGACTGGTCGGAAGGGGAGAGAGCGCCAGTTGAGGATCCCGAAGCAGCTCTCGCCGGCTTTGGTTGCCCCGCCGGAGCTAATTCGTGCTGGCTGGACATTGCTTGCGGCCGCGAGCATACCACAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.13

Weight (kDa)

6.52

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41830 AT2G41830
fragaria_vesca	FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620
malus_domestica	MD12G1077200.v1.1 MD14G1070800.v1.1
prunus_persica	Prupe.7G063500_v2.0.a1 Prupe.7G063500_v2.0.a1
pyrus_communis	pycom12g06250 pycom14g06020
rosa_chinensis	RchiOBHm_Chr3g0481871
rosa_laevigata	RLG00000023380
rosa_multiflora	Rmu_ssc0000267.1_g000017
rosa_roxburghii	Rroxscaffold_6G00399810 Rroxscaffold_6G00400140
rosa_rugosa	Rorug03G0194100 Rorug03G0194200
rosa_samantha	Rh1AG268100 Rh3AG245100 Rh3BG280300 Rh3CG275200 Rh3CG275600 Rh3CG276300 Rh3CG276400 Rh4CG314400
rosa_wichuraiana	Rw0G004350 Rw3G021880 Rw3G021900 Rw3G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	303
AccII	CGCG	1 cut(s)	632
AciI	CCGC	3 cut(s)	590, 626, 630
AclWI	GGATC	3 cut(s)	72, 550, 563
AcoI	YGGCCR	4 cut(s)	177, 181, 517, 627
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	2 cut(s)	82, 395
AjiI	CACGTC	1 cut(s)	328
AjnI	CCWGG	2 cut(s)	19, 108
AluBI	AGCT	2 cut(s)	568, 598
AluI	AGCT	2 cut(s)	568, 598
Alw26I	GTCTC	4 cut(s)	107, 148, 296, 345
AlwI	GGATC	3 cut(s)	72, 550, 563
AoxI	GGCC	5 cut(s)	177, 181, 451, 517, 627
ApeKI	GCWGC	2 cut(s)	211, 565
Asp700I	GAANNNNTTC	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	546
AspS9I	GGNCC	2 cut(s)	106, 451
AvaII	GGWCC	1 cut(s)	106
BamHI	GGATCC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	223, 577
BccI	CCATC	1 cut(s)	388
BciT130I	CCWGG	2 cut(s)	21, 110
BcoDI	GTCTC	4 cut(s)	107, 148, 296, 345
BfaI	CTAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	547
BfuAI	ACCTGC	1 cut(s)	303
BisI	GCNGC	4 cut(s)	212, 566, 627, 630
BlsI	GCNGC	4 cut(s)	213, 567, 628, 631
Bme1390I	CCNGG	2 cut(s)	21, 110
Bme18I	GGWCC	1 cut(s)	106
BmgBI	CACGTC	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	106, 451
BmiI	GGNNCC	2 cut(s)	334, 557
BmrFI	CCNGG	2 cut(s)	21, 110
BsaI	GGTCTC	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	3 cut(s)	179, 463, 574
Bse1I	ACTGG	3 cut(s)	511, 529, 547
Bse3DI	GCAATG	1 cut(s)	617
BseBI	CCWGG	2 cut(s)	21, 110
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	617
BseNI	ACTGG	3 cut(s)	511, 529, 547
BseRI	GAGGAG	1 cut(s)	496
BseX3I	CGGCCG	1 cut(s)	627
BseXI	GCAGC	2 cut(s)	223, 577
Bsh1236I	CGCG	1 cut(s)	632
Bsh1285I	CGRYCG	2 cut(s)	464, 630
BshFI	GGCC	5 cut(s)	179, 183, 453, 519, 629
BsiEI	CGRYCG	2 cut(s)	464, 630
BsiSI	CCGG	5 cut(s)	180, 464, 516, 575, 593
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	4 cut(s)	107, 148, 296, 345
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	5 cut(s)	179, 183, 453, 519, 629
Bso31I	GGTCTC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	64, 555
BspACI	CCGC	3 cut(s)	590, 626, 630
BspANI	GGCC	5 cut(s)	179, 183, 453, 519, 629
BspFNI	CGCG	1 cut(s)	632
BspLI	GGNNCC	2 cut(s)	334, 557
BspMI	ACCTGC	1 cut(s)	303
BspPI	GGATC	3 cut(s)	72, 550, 563
BspTNI	GGTCTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	617
BsrFI	RCCGGY	3 cut(s)	179, 463, 574
BsrI	ACTGG	3 cut(s)	511, 529, 547
BssAI	RCCGGY	3 cut(s)	179, 463, 574
BssMI	GATC	2 cut(s)	64, 555
Bst2UI	CCWGG	2 cut(s)	21, 110
Bst4CI	ACNGT	4 cut(s)	47, 188, 376, 645
Bst6I	CTCTTC	1 cut(s)	343
BstC8I	GCNNGC	5 cut(s)	181, 576, 610, 624, 634
BstF5I	GGATG	1 cut(s)	380
BstFNI	CGCG	1 cut(s)	632
BstH2I	RGCGCY	1 cut(s)	547
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	2 cut(s)	67, 558
BstMAI	GTCTC	4 cut(s)	107, 148, 296, 345
BstMBI	GATC	2 cut(s)	64, 555
BstMCI	CGRYCG	2 cut(s)	464, 630
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 571, 584
BstNI	CCWGG	2 cut(s)	21, 110
BstSCI	CCNGG	2 cut(s)	19, 108
BstUI	CGCG	1 cut(s)	632
BstV1I	GCAGC	2 cut(s)	223, 577
BstX2I	RGATCY	2 cut(s)	64, 555
BstYI	RGATCY	2 cut(s)	64, 555
BstZI	CGGCCG	1 cut(s)	627
BsuRI	GGCC	5 cut(s)	179, 183, 453, 519, 629
BtrI	CACGTC	1 cut(s)	328
BtsCI	GGATG	1 cut(s)	380
BtsIMutI	CAGTG	2 cut(s)	52, 184
BveI	ACCTGC	1 cut(s)	303
Cac8I	GCNNGC	5 cut(s)	181, 576, 610, 624, 634
CciNI	GCGGCCGC	1 cut(s)	627
CfoI	GCGC	1 cut(s)	546
Cfr10I	RCCGGY	3 cut(s)	179, 463, 574
Cfr13I	GGNCC	2 cut(s)	106, 451
CviAII	CATG	1 cut(s)	430
DpnI	GATC	2 cut(s)	66, 557
DpnII	GATC	2 cut(s)	64, 555
EaeI	YGGCCR	4 cut(s)	177, 181, 517, 627
EagI	CGGCCG	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
EclXI	CGGCCG	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	345
Eco32I	GATATC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	106
Eco52I	CGGCCG	1 cut(s)	627
EcoRII	CCWGG	2 cut(s)	19, 108
EcoRV	GATATC	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	1 cut(s)	433
FaiI	YATR	7 cut(s)	62, 233, 321, 339, 431, 507, 638
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	1 cut(s)	429
FauI	CCCGC	1 cut(s)	597
Fnu4HI	GCNGC	4 cut(s)	212, 566, 627, 630
FokI	GGATG	1 cut(s)	367
FseI	GGCCGGCC	1 cut(s)	183
Fsp4HI	GCNGC	4 cut(s)	212, 566, 627, 630
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	4 cut(s)	212, 566, 627, 630
HaeII	RGCGCY	1 cut(s)	547
HaeIII	GGCC	5 cut(s)	179, 183, 453, 519, 629
HapII	CCGG	5 cut(s)	180, 464, 516, 575, 593
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	1 cut(s)	433
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HinfI	GANTC	3 cut(s)	11, 101, 314
HpaII	CCGG	5 cut(s)	180, 464, 516, 575, 593
Hpy188I	TCNGA	1 cut(s)	531
Hpy188III	TCNNGA	1 cut(s)	559
HpyAV	CCTTC	5 cut(s)	126, 401, 415, 419, 526
HpyCH4III	ACNGT	4 cut(s)	47, 188, 376, 645
HpyCH4IV	ACGT	2 cut(s)	327, 495
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 571, 584
HpySE526I	ACGT	2 cut(s)	327, 495
Hsp92II	CATG	1 cut(s)	433
HspAI	GCGC	1 cut(s)	544
KroI	GCCGGC	2 cut(s)	179, 574
KroNI	GCCGGC	2 cut(s)	181, 576
Kzo9I	GATC	2 cut(s)	64, 555
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	2 cut(s)	223, 577
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	2 cut(s)	327, 495
MalI	GATC	2 cut(s)	66, 557
MboI	GATC	2 cut(s)	64, 555
MboII	GAAGA	4 cut(s)	17, 59, 229, 360
MflI	RGATCY	2 cut(s)	64, 555
MluCI	AATT	2 cut(s)	423, 600
MmeI	TCCRAC	2 cut(s)	109, 509
MnlI	CCTC	7 cut(s)	184, 244, 379, 423, 433, 474, 546
MroNI	GCCGGC	2 cut(s)	179, 574
MroXI	GAANNNNTTC	1 cut(s)	136
MseI	TTAA	2 cut(s)	87, 426
MspI	CCGG	5 cut(s)	180, 464, 516, 575, 593
MspR9I	CCNGG	2 cut(s)	21, 110
MvaI	CCWGG	2 cut(s)	21, 110
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	3 cut(s)	208, 571, 584
NaeI	GCCGGC	2 cut(s)	181, 576
NdeII	GATC	2 cut(s)	64, 555
NgoMIV	GCCGGC	2 cut(s)	179, 574
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	2 cut(s)	334, 557
NotI	GCGGCCGC	1 cut(s)	627
PdiI	GCCGGC	2 cut(s)	181, 576
PdmI	GAANNNNTTC	1 cut(s)	136
PfeI	GAWTC	3 cut(s)	11, 101, 314
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	213, 567, 628, 631
Psp6I	CCWGG	2 cut(s)	19, 108
PspGI	CCWGG	2 cut(s)	19, 108
PspN4I	GGNNCC	2 cut(s)	334, 557
PspPI	GGNCC	2 cut(s)	106, 451
PsuI	RGATCY	2 cut(s)	64, 555
RigI	GGCCGGCC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	87, 426
SatI	GCNGC	4 cut(s)	212, 566, 627, 630
Sau3AI	GATC	2 cut(s)	64, 555
Sau96I	GGNCC	2 cut(s)	106, 451
ScrFI	CCNGG	2 cut(s)	21, 110
SetI	ASST	9 cut(s)	137, 157, 297, 313, 330, 371, 498, 570, 600
SinI	GGWCC	1 cut(s)	106
Sse9I	AATT	2 cut(s)	423, 600
SsiI	CCGC	3 cut(s)	590, 626, 630
SspMI	CTAG	1 cut(s)	203
StyD4I	CCNGG	2 cut(s)	19, 108
TaaI	ACNGT	4 cut(s)	47, 188, 376, 645
TaiI	ACGT	2 cut(s)	330, 498
TaqI	TCGA	1 cut(s)	438
TaqII	GACCGA	1 cut(s)	94
TasI	AATT	2 cut(s)	423, 600
TauI	GCSGC	2 cut(s)	629, 632
TfiI	GAWTC	3 cut(s)	11, 101, 314
Tru1I	TTAA	2 cut(s)	87, 426
Tru9I	TTAA	2 cut(s)	87, 426
TscAI	CASTG	2 cut(s)	52, 191
TseI	GCWGC	2 cut(s)	211, 565
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	52, 191
VpaK11BI	GGWCC	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	136
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.