Rw3G021900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003524
Physical Location & Seq
Forward (+)
26630669 .. 26633434
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021900.1

Sequence Viewer

Length: 1152 bp
ATGCCTGAAAACTATGAAGCAATTGCTCATACCTACAGCCTTGTATTACTGTTATCTCGGGCCAAGAATTCCTGCATTGAGGTTCTTGTTCGAATTTTTCAGCTGGCATTTTCCTTACGAAATATCTCTCTTATTGAAGGAGGGAAGCCCCACAGGCCGTTGCCACCATCGCTTCGCAGGTCCCTGTTTACCCTGGCCACTTCAATGATTCTATTTTTATCAAAAGCATACAATTTTTTCTCTCTGGTTGATAGAGTCAAGGCAGCACTGACGGATAAAAAGGTTGATCCGTTCCTACATTTGGTTGAAGAGTACAAGTTACAGGCTGTTAAGGCTGGACCTGACCATCCCACATATCCCTATGGATCCAAGGAAGATGACAATTTGGCATTAAAATCTCTGTCGCAAATAGTGATTACTGAAGAGCGGAGTAGGGAATCATTTGCTTCTGCAATTGTGAAGAGCTTGGACAATTTGTCAGCATCTGAATTGTCTTCTATAAAGGAGGAGTTGCTCAATGATTTCGTACCTGATGATATCTGTCCACTAGGAGCACAATTGTTCACAGAAGCTCCAAAAAAACTTTATCAGGTTGATTTCACAAATAGTGAATCTATTAAGGAGGATGCTTCATTATTTTCAATGGAAGATGATTCTGTTCCAGGCTCATCTAATAGCCACCAGAACAGTGTAGAGTTGTCTATGGATCTTCCCATTCTTTTGAATGTTAATCAACTAATGGAATCGGTCCAGGAGACAGCAAATCAAGTTGGAAGGTTTTCAGTCTCAACTAAACCTGATGTATCTTACAAGGAAATGGCCGGCCACTGTGAGGCACTTCTGCTAGGAAAGCAGCAGAAGATGTCCAAGTTCATGAGTTCTCAAAAGAAAGAGGAATGTTTGATGAATTTCTCTTTACAAAATCATAATGACGGCCTGCAAGAGACAACGCCCGATTCTTATATTGACGTGGGTTCCCATGGGAGCGGTAATGCTTTTGCTGACCACACTGCCACTGCCTACAAACTACCGCCAACCCCAGGCCATGTCCCAATGCTTTGTGCAGCGGAATACCAGCATAATCCCCACTCCTCCTTCAGACTACCAGCCTCAAATCCATGTGATAACTTCCTAAAAGCTGCCGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

383

Amino Acids

42.37

Weight (kDa)

5.49

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
AccBSI CCGCTC 2 cut(s) 427, 987
AciI CCGC 4 cut(s) 427, 987, 1031, 1067
AclWI GGATC 4 cut(s) 281, 360, 373, 714
AcoI YGGCCR 3 cut(s) 195, 819, 823
AcsI RAATTY 3 cut(s) 67, 93, 907
AcuI CTGAAG 2 cut(s) 441, 1081
AfaI GTAC 2 cut(s) 314, 528
AfiI CCNNNNNNNGG 3 cut(s) 301, 832, 1040
AgsI TTSAA 5 cut(s) 137, 204, 308, 642, 724
AhdI GACNNNNNGTC 1 cut(s) 475
AjiI CACGTC 1 cut(s) 970
AjnI CCWGG 4 cut(s) 192, 661, 750, 1039
AluBI AGCT 4 cut(s) 103, 465, 572, 1139
AluI AGCT 4 cut(s) 103, 465, 572, 1139
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 3 cut(s) 749, 790, 938
AlwI GGATC 4 cut(s) 281, 360, 373, 714
AlwNI CAGNNNCTG 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 7 cut(s) 60, 155, 195, 819, 823, 934, 1042
ApeKI GCWGC 4 cut(s) 263, 853, 1064, 1139
ApoI RAATTY 3 cut(s) 67, 93, 907
Asp700I GAANNNNTTC 1 cut(s) 778
AspS9I GGNCC 4 cut(s) 60, 180, 338, 748
AsuII TTCGAA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 3 cut(s) 180, 338, 748
BalI TGGCCA 1 cut(s) 197
BamHI GGATCC 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 4 cut(s) 275, 865, 1076, 1126
BccI CCATC 2 cut(s) 175, 354
BceAI ACGGC 2 cut(s) 142, 949
BciT130I CCWGG 4 cut(s) 194, 663, 752, 1041
BcoDI GTCTC 3 cut(s) 749, 790, 938
BfaI CTAG 2 cut(s) 548, 845
BfmI CTRYAG 1 cut(s) 34
BfuAI ACCTGC 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 154
BisI GCNGC 4 cut(s) 264, 854, 1065, 1140
BlsI GCNGC 4 cut(s) 265, 855, 1066, 1141
Bme1390I CCNGG 4 cut(s) 194, 663, 752, 1041
Bme18I GGWCC 3 cut(s) 180, 338, 748
BmeRI GACNNNNNGTC 1 cut(s) 475
BmeT110I CYCGRG 1 cut(s) 57
BmgBI CACGTC 1 cut(s) 970
BmgT120I GGNCC 4 cut(s) 60, 180, 338, 748
BmiI GGNNCC 3 cut(s) 182, 367, 976
BmrFI CCNGG 4 cut(s) 194, 663, 752, 1041
BmsI GCATC 2 cut(s) 491, 616
BpiI GAAGAC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 91
BsaJI CCNNGG 4 cut(s) 192, 369, 979, 1039
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 3 cut(s) 301, 832, 1040
Bse118I RCCGGY 2 cut(s) 821, 1142
BseBI CCWGG 4 cut(s) 194, 663, 752, 1041
BseDI CCNNGG 4 cut(s) 192, 369, 979, 1039
BseGI GGATG 2 cut(s) 346, 631
BseLI CCNNNNNNNGG 3 cut(s) 301, 832, 1040
BseRI GAGGAG 2 cut(s) 521, 1081
BseXI GCAGC 4 cut(s) 275, 865, 1076, 1126
BsgI GTGCAG 1 cut(s) 1083
BshFI GGCC 7 cut(s) 62, 157, 197, 821, 825, 936, 1044
BsiHKAI GWGCWC 1 cut(s) 556
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 822, 1143
BslFI GGGAC 2 cut(s) 166, 1034
BslI CCNNNNNNNGG 3 cut(s) 301, 832, 1040
BsmAI GTCTC 3 cut(s) 749, 790, 938
BsmFI GGGAC 2 cut(s) 166, 1034
BsnI GGCC 7 cut(s) 62, 157, 197, 821, 825, 936, 1044
BsoBI CYCGRG 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 3 cut(s) 286, 365, 706
Bsp19I CCATGG 1 cut(s) 979
BspACI CCGC 4 cut(s) 427, 987, 1031, 1067
BspANI GGCC 7 cut(s) 62, 157, 197, 821, 825, 936, 1044
BspHI TCATGA 1 cut(s) 873
BspLI GGNNCC 3 cut(s) 182, 367, 976
BspMI ACCTGC 1 cut(s) 168
BspPI GGATC 4 cut(s) 281, 360, 373, 714
BspQI GCTCTTC 2 cut(s) 417, 455
BspT104I TTCGAA 1 cut(s) 91
BsrBI CCGCTC 2 cut(s) 427, 987
BsrFI RCCGGY 2 cut(s) 821, 1142
BssAI RCCGGY 2 cut(s) 821, 1142
BssECI CCNNGG 4 cut(s) 192, 369, 979, 1039
BssMI GATC 3 cut(s) 286, 365, 706
BssT1I CCWWGG 2 cut(s) 369, 979
Bst2UI CCWGG 4 cut(s) 194, 663, 752, 1041
Bst4CI ACNGT 3 cut(s) 51, 689, 830
Bst6I CTCTTC 3 cut(s) 303, 417, 455
BstBI TTCGAA 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 105, 823, 938
BstDSI CCRYGG 1 cut(s) 979
BstF5I GGATG 2 cut(s) 346, 631
BstKTI GATC 3 cut(s) 289, 368, 709
BstMAI GTCTC 3 cut(s) 749, 790, 938
BstMBI GATC 3 cut(s) 286, 365, 706
BstMWI GCNNNNNNNGC 4 cut(s) 154, 169, 332, 850
BstNI CCWGG 4 cut(s) 194, 663, 752, 1041
BstSCI CCNGG 4 cut(s) 192, 661, 750, 1039
BstSFI CTRYAG 1 cut(s) 34
BstV1I GCAGC 4 cut(s) 275, 865, 1076, 1126
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 2 cut(s) 365, 706
BstYI RGATCY 2 cut(s) 365, 706
BsuRI GGCC 7 cut(s) 62, 157, 197, 821, 825, 936, 1044
BtgI CCRYGG 1 cut(s) 979
BtgZI GCGATG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 970
BtsCI GGATG 2 cut(s) 346, 631
BtsI GCAGTG 2 cut(s) 1008, 1014
BtsIMutI CAGTG 5 cut(s) 266, 694, 826, 1008, 1014
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 3 cut(s) 105, 823, 938
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 1 cut(s) 873
Cfr10I RCCGGY 2 cut(s) 821, 1142
Cfr13I GGNCC 4 cut(s) 60, 180, 338, 748
Csp6I GTAC 2 cut(s) 313, 527
CviAII CATG 4 cut(s) 874, 980, 1046, 1119
CviQI GTAC 2 cut(s) 313, 527
DpnI GATC 3 cut(s) 288, 367, 708
DpnII GATC 3 cut(s) 286, 365, 706
DriI GACNNNNNGTC 1 cut(s) 475
EaeI YGGCCR 3 cut(s) 195, 819, 823
Eam1104I CTCTTC 3 cut(s) 303, 417, 455
Eam1105I GACNNNNNGTC 1 cut(s) 475
EarI CTCTTC 3 cut(s) 303, 417, 455
Eco130I CCWWGG 2 cut(s) 369, 979
Eco32I GATATC 1 cut(s) 538
Eco47I GGWCC 3 cut(s) 180, 338, 748
Eco57I CTGAAG 2 cut(s) 441, 1081
Eco88I CYCGRG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 67
EcoRII CCWGG 4 cut(s) 192, 661, 750, 1039
EcoRV GATATC 1 cut(s) 538
EcoT14I CCWWGG 2 cut(s) 369, 979
ErhI CCWWGG 2 cut(s) 369, 979
FaeI CATG 4 cut(s) 877, 983, 1049, 1122
FaqI GGGAC 2 cut(s) 166, 1034
FatI CATG 4 cut(s) 873, 979, 1045, 1118
Fnu4HI GCNGC 4 cut(s) 264, 854, 1065, 1140
FokI GGATG 2 cut(s) 333, 638
FseI GGCCGGCC 1 cut(s) 825
Fsp4HI GCNGC 4 cut(s) 264, 854, 1065, 1140
FspBI CTAG 2 cut(s) 548, 845
GluI GCNGC 4 cut(s) 264, 854, 1065, 1140
HaeIII GGCC 7 cut(s) 62, 157, 197, 821, 825, 936, 1044
HapII CCGG 2 cut(s) 822, 1143
Hin1II CATG 4 cut(s) 877, 983, 1049, 1122
HinfI GANTC 7 cut(s) 208, 255, 437, 611, 653, 743, 956
HpaII CCGG 2 cut(s) 822, 1143
Hpy166II GTNNAC 3 cut(s) 189, 545, 564
Hpy188I TCNGA 2 cut(s) 487, 1100
Hpy188III TCNNGA 1 cut(s) 874
Hpy8I GTNNAC 3 cut(s) 189, 545, 564
HpyAV CCTTC 3 cut(s) 131, 768, 1105
HpyCH4III ACNGT 3 cut(s) 51, 689, 830
HpyCH4IV ACGT 1 cut(s) 969
HpyCH4V TGCA 4 cut(s) 75, 452, 940, 1064
HpyF10VI GCNNNNNNNGC 4 cut(s) 154, 169, 332, 850
HpySE526I ACGT 1 cut(s) 969
Hsp92II CATG 4 cut(s) 877, 983, 1049, 1122
KroI GCCGGC 1 cut(s) 821
KroNI GCCGGC 1 cut(s) 823
Kzo9I GATC 3 cut(s) 286, 365, 706
LguI GCTCTTC 2 cut(s) 417, 455
LmnI GCTCC 3 cut(s) 551, 577, 984
Lsp1109I GCAGC 4 cut(s) 275, 865, 1076, 1126
LweI GCATC 2 cut(s) 491, 616
MaeI CTAG 2 cut(s) 548, 845
MaeII ACGT 1 cut(s) 969
MaeIII GTNAC 1 cut(s) 318
MalI GATC 3 cut(s) 288, 367, 708
MbiI CCGCTC 2 cut(s) 427, 987
MboI GATC 3 cut(s) 286, 365, 706
MboII GAAGA 8 cut(s) 320, 386, 434, 472, 486, 659, 701, 871
MfeI CAATTG 3 cut(s) 21, 453, 557
MflI RGATCY 2 cut(s) 365, 706
MhlI GDGCHC 1 cut(s) 556
MlsI TGGCCA 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 1 cut(s) 751
MnlI CCTC 8 cut(s) 73, 134, 499, 616, 826, 886, 1102, 1120
Mox20I TGGCCA 1 cut(s) 197
MroNI GCCGGC 1 cut(s) 821
MroXI GAANNNNTTC 1 cut(s) 778
MscI TGGCCA 1 cut(s) 197
MseI TTAA 4 cut(s) 330, 392, 618, 729
MslI CAYNNNNRTG 1 cut(s) 203
Msp20I TGGCCA 1 cut(s) 197
MspA1I CMGCKG 2 cut(s) 103, 1067
MspI CCGG 2 cut(s) 822, 1143
MspR9I CCNGG 4 cut(s) 194, 663, 752, 1041
MunI CAATTG 3 cut(s) 21, 453, 557
MvaI CCWGG 4 cut(s) 194, 663, 752, 1041
MwoI GCNNNNNNNGC 4 cut(s) 154, 169, 332, 850
NaeI GCCGGC 1 cut(s) 823
NcoI CCATGG 1 cut(s) 979
NdeII GATC 3 cut(s) 286, 365, 706
NgoMIV GCCGGC 1 cut(s) 821
NlaIII CATG 4 cut(s) 877, 983, 1049, 1122
NlaIV GGNNCC 3 cut(s) 182, 367, 976
NspV TTCGAA 1 cut(s) 91
PagI TCATGA 1 cut(s) 873
PciSI GCTCTTC 2 cut(s) 417, 455
PdiI GCCGGC 1 cut(s) 823
PdmI GAANNNNTTC 1 cut(s) 778
PfeI GAWTC 6 cut(s) 208, 437, 611, 653, 743, 956
PfoI TCCNGGA 1 cut(s) 750
PkrI GCNGC 4 cut(s) 265, 855, 1066, 1141
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PpuMI RGGWCCY 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 4 cut(s) 192, 661, 750, 1039
PspGI CCWGG 4 cut(s) 192, 661, 750, 1039
PspN4I GGNNCC 3 cut(s) 182, 367, 976
PspPI GGNCC 4 cut(s) 60, 180, 338, 748
PspPPI RGGWCCY 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 2 cut(s) 365, 706
PvuII CAGCTG 1 cut(s) 103
RigI GGCCGGCC 1 cut(s) 825
RsaI GTAC 2 cut(s) 314, 528
RsaNI GTAC 2 cut(s) 313, 527
RseI CAYNNNNRTG 1 cut(s) 203
SapI GCTCTTC 2 cut(s) 417, 455
SaqAI TTAA 4 cut(s) 330, 392, 618, 729
SatI GCNGC 4 cut(s) 264, 854, 1065, 1140
Sau3AI GATC 3 cut(s) 286, 365, 706
Sau96I GGNCC 4 cut(s) 60, 180, 338, 748
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 4 cut(s) 194, 663, 752, 1041
SduI GDGCHC 1 cut(s) 556
SfaNI GCATC 2 cut(s) 491, 616
SfcI CTRYAG 1 cut(s) 34
SfuI TTCGAA 1 cut(s) 91
SinI GGWCC 3 cut(s) 180, 338, 748
SmiMI CAYNNNNRTG 1 cut(s) 203
SsiI CCGC 4 cut(s) 427, 987, 1031, 1067
SspMI CTAG 2 cut(s) 548, 845
StyD4I CCNGG 4 cut(s) 192, 661, 750, 1039
StyI CCWWGG 2 cut(s) 369, 979
TaaI ACNGT 3 cut(s) 51, 689, 830
TaiI ACGT 1 cut(s) 972
TaqI TCGA 1 cut(s) 91
TaqII GACCGA 1 cut(s) 736
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 6 cut(s) 208, 437, 611, 653, 743, 956
Tru1I TTAA 4 cut(s) 330, 392, 618, 729
Tru9I TTAA 4 cut(s) 330, 392, 618, 729
TscAI CASTG 5 cut(s) 273, 694, 833, 1015, 1021
TseI GCWGC 4 cut(s) 263, 853, 1064, 1139
TspDTI ATGAA 4 cut(s) 30, 621, 862, 920
TspGWI ACGGA 2 cut(s) 279, 287
TspRI CASTG 5 cut(s) 273, 694, 833, 1015, 1021
VpaK11BI GGWCC 3 cut(s) 180, 338, 748
XapI RAATTY 3 cut(s) 67, 93, 907
XmnI GAANNNNTTC 1 cut(s) 778
XspI CTAG 2 cut(s) 548, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.