Rh3CG276300

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003524
Physical Location & Seq
Forward (+)
27535528 .. 27536046
519 bp
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UTR
Exon/CDS
Intron
Rh3CG276300.1

Sequence Viewer

Length: 402 bp
ATGGAAGATGATTCTGTTCCAGGCTCATCTAATAGCCACCAGAACAGTGTAGAGTTGTCTATGGATCTTCCCATTCTTTTGAATGTTAATCAACTAATGGAATCGGTCCAGGAGACAGCAAATCAAGTTGGAAGGTTTTCAGTCTCAACTAAACCTGATGTATCTTACAAGGAAATGGCCGGCCACTGTGAGGCACTTCTGCTAGGAACGCAGCAGAAGATGTCCAAGTTTATGAGTTCTCAAAAGAAAGAGGAATGTTTGATGAACTTCTCTTTACAAAATCACAATGACGACCTGCAAGAGACGACACCTGATTCTTATATTGACGTGGGTTCCCATAGGGTACTTTCTGGCTATAACTCAAAACTATGCATACTTGTGTTAGTTCAATCACATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.81

Weight (kDa)

4.9

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 303
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 2 cut(s) 177, 181
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 2 cut(s) 82, 389
AjiI CACGTC 1 cut(s) 328
AjnI CCWGG 2 cut(s) 19, 108
Alw26I GTCTC 3 cut(s) 107, 148, 296
AlwI GGATC 1 cut(s) 72
AoxI GGCC 2 cut(s) 177, 181
ApeKI GCWGC 1 cut(s) 211
Asp700I GAANNNNTTC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 223
BciT130I CCWGG 2 cut(s) 21, 110
BcoDI GTCTC 3 cut(s) 107, 148, 296
BfaI CTAG 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 303
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 2 cut(s) 21, 110
Bme18I GGWCC 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 21, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 179
BseBI CCWGG 2 cut(s) 21, 110
BseLI CCNNNNNNNGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 223
BshFI GGCC 2 cut(s) 179, 183
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 3 cut(s) 107, 148, 296
BsmBI CGTCTC 1 cut(s) 296
BsnI GGCC 2 cut(s) 179, 183
Bsp143I GATC 1 cut(s) 64
BspANI GGCC 2 cut(s) 179, 183
BspLI GGNNCC 1 cut(s) 334
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 2 cut(s) 21, 110
Bst4CI ACNGT 2 cut(s) 47, 188
BstC8I GCNNGC 1 cut(s) 181
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 3 cut(s) 107, 148, 296
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 2 cut(s) 21, 110
BstSCI CCNGG 2 cut(s) 19, 108
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 2 cut(s) 179, 183
BtrI CACGTC 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 52, 184
BveI ACCTGC 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 181
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 344
CviJI RGCY 5 cut(s) 24, 36, 179, 183, 354
CviKI_1 RGCY 5 cut(s) 24, 36, 179, 183, 354
CviQI GTAC 1 cut(s) 344
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EaeI YGGCCR 2 cut(s) 177, 181
Eco47I GGWCC 1 cut(s) 106
EcoRII CCWGG 2 cut(s) 19, 108
EcoT22I ATGCAT 1 cut(s) 374
Esp3I CGTCTC 1 cut(s) 296
FaiI YATR 7 cut(s) 62, 233, 321, 339, 357, 370, 374
Fnu4HI GCNGC 1 cut(s) 212
FseI GGCCGGCC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 1 cut(s) 203
GluI GCNGC 1 cut(s) 212
HaeIII GGCC 2 cut(s) 179, 183
HapII CCGG 1 cut(s) 180
HinfI GANTC 3 cut(s) 11, 101, 314
HpaII CCGG 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 2 cut(s) 47, 188
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 2 cut(s) 298, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpySE526I ACGT 1 cut(s) 327
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 327
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 3 cut(s) 17, 59, 229
MflI RGATCY 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 2 cut(s) 184, 244
Mph1103I ATGCAT 1 cut(s) 374
MroNI GCCGGC 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 136
MseI TTAA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 21, 110
MvaI CCWGG 2 cut(s) 21, 110
MwoI GCNNNNNNNGC 1 cut(s) 208
NaeI GCCGGC 1 cut(s) 181
NdeII GATC 1 cut(s) 64
NgoMIV GCCGGC 1 cut(s) 179
NlaIV GGNNCC 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 374
PdiI GCCGGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 3 cut(s) 11, 101, 314
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 19, 108
PspGI CCWGG 2 cut(s) 19, 108
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 1 cut(s) 106
PsuI RGATCY 1 cut(s) 64
RigI GGCCGGCC 1 cut(s) 183
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 64
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 21, 110
SetI ASST 5 cut(s) 137, 157, 297, 313, 330
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 377
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 2 cut(s) 19, 108
TaaI ACNGT 2 cut(s) 47, 188
TaiI ACGT 1 cut(s) 330
TaqII GACCGA 1 cut(s) 94
TfiI GAWTC 3 cut(s) 11, 101, 314
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 2 cut(s) 52, 191
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 278
TspRI CASTG 2 cut(s) 52, 191
VpaK11BI GGWCC 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 1 cut(s) 203
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.