Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003524

Physical Location & Seq

Genomic Coordinates Forward (+)

27392328 .. 27394039

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG275600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTTCTTGCAGCATTCATTGTCATTTATAATCGAAGAAAATATGAAGGAGCACGATATTGCATATCAGGATGTTAGTTCAAGCCACTTCGATTGTTTCATTTCAGGGCCGTTGCCACCATCGCTTCGCAGGTCCCTGTTTACCCTGGCCACTTCAATGATTCTATTTTTATCAAAAGCATACAATTTTTTCTCTCTGGTTGATAGAGTCAAGGCAGCACTGACGGATAAAAAGGTTGATCCGTTCCTACATTTGGTTGAAGAGTACAAGTTACAGGCTGTTAAGGCTGGACCTGACCATCCCACATATCCCTATGGATCCAAGGAAGATGACAATTTGGCATTAAAATCTCTGTCGCAAATAGTGATTACTGAAGAGCGGAGTAGGGAATCATTTGCTTCTGCAATTGTGAAGAGCTTGGACAATTTGTCAGCATCTGAATTGTCTTCTATAAAGGAGGAGTTGCTCAATGATTTCGTACCTGATGATATCTGTCCACTAGGAGCACAATTGTTCACAGAAGCTCCAAAAAAACTTTATCAGGTTGATTTCACAAATAGTGAATCTATTAAGGAGGATGCTTCATTATTTTCAATGGAAGATGATTCTGTTCCAGGCTCATCTAATAGCCACCAGAACAGTGTAGAGTTGTCTATGGATCTTCCCATTCTTTTGAATGTTAATCAACTAATGGAATCGGTCCAGGAGACAGCAAATCAAGTTGGAAGGTTTTCAGTCTCAACTAAACCTGATGTATCTTACAAGGAAATGGCCGGCCACTGTGAGGCACTTCTGCTAGGAAAGCAGCAGAAGATGTCCAAGTTCATGAGTTCTCAAAAGAAAGAGGAATGTTTGATGAACTTCTCTTTACAAAATCATAATGACGGCCTGCAAGAGACAACGCCCGATTCTTATATTGACGTGGGTTCCCATAGGAGCGGTAATGCTTTTGCTGACCACACTGCCACTTCCTACAAACTACCGCCAACCCCAGGCCATGTCCCAATGCTTTGTGCAGCGGAATACCAGCATAATCCCCACTCCTCCTTCAGACTACCAGCCTCAAATCCATATGATAACTTCCTAAAAGCTGCCGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

40.84

Weight (kDa)

5.1

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003524)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41830 AT2G41830
fragaria_vesca	FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620 FvH4_6g23620
malus_domestica	MD12G1077200.v1.1 MD14G1070800.v1.1
prunus_persica	Prupe.7G063500_v2.0.a1 Prupe.7G063500_v2.0.a1
pyrus_communis	pycom12g06250 pycom14g06020
rosa_chinensis	RchiOBHm_Chr3g0481871
rosa_laevigata	RLG00000023380
rosa_multiflora	Rmu_ssc0000267.1_g000017
rosa_roxburghii	Rroxscaffold_6G00399810 Rroxscaffold_6G00400140
rosa_rugosa	Rorug03G0194100 Rorug03G0194200
rosa_samantha	Rh1AG268100 Rh3AG245100 Rh3BG280300 Rh3CG275200 Rh3CG275600 Rh3CG276300 Rh3CG276400 Rh4CG314400
rosa_wichuraiana	Rw0G004350 Rw3G021880 Rw3G021900 Rw3G021930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	120
AccBSI	CCGCTC	2 cut(s)	379, 939
AciI	CCGC	4 cut(s)	379, 939, 983, 1019
AclWI	GGATC	4 cut(s)	233, 312, 325, 666
AcoI	YGGCCR	3 cut(s)	147, 771, 775
AcuI	CTGAAG	2 cut(s)	393, 1033
AfaI	GTAC	2 cut(s)	266, 480
AfiI	CCNNNNNNNGG	3 cut(s)	253, 784, 992
AgsI	TTSAA	5 cut(s)	81, 156, 260, 594, 676
AhdI	GACNNNNNGTC	1 cut(s)	427
AjiI	CACGTC	1 cut(s)	922
AjnI	CCWGG	4 cut(s)	144, 613, 702, 991
AluBI	AGCT	3 cut(s)	417, 524, 1091
AluI	AGCT	3 cut(s)	417, 524, 1091
Alw21I	GWGCWC	2 cut(s)	54, 508
Alw26I	GTCTC	3 cut(s)	701, 742, 890
AlwI	GGATC	4 cut(s)	233, 312, 325, 666
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	6 cut(s)	107, 147, 771, 775, 886, 994
ApeKI	GCWGC	5 cut(s)	10, 215, 805, 1016, 1091
Asp700I	GAANNNNTTC	1 cut(s)	730
AspS9I	GGNCC	4 cut(s)	107, 132, 290, 700
AvaII	GGWCC	3 cut(s)	132, 290, 700
BalI	TGGCCA	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	317
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	54, 508
BbvI	GCAGC	5 cut(s)	22, 227, 817, 1028, 1078
BccI	CCATC	2 cut(s)	127, 306
BceAI	ACGGC	2 cut(s)	94, 901
BciT130I	CCWGG	4 cut(s)	146, 615, 704, 993
BcoDI	GTCTC	3 cut(s)	701, 742, 890
BfaI	CTAG	2 cut(s)	500, 797
BfuAI	ACCTGC	1 cut(s)	120
BisI	GCNGC	5 cut(s)	11, 216, 806, 1017, 1092
BlsI	GCNGC	5 cut(s)	12, 217, 807, 1018, 1093
Bme1390I	CCNGG	4 cut(s)	146, 615, 704, 993
Bme18I	GGWCC	3 cut(s)	132, 290, 700
BmeRI	GACNNNNNGTC	1 cut(s)	427
BmgBI	CACGTC	1 cut(s)	922
BmgT120I	GGNCC	4 cut(s)	107, 132, 290, 700
BmiI	GGNNCC	3 cut(s)	134, 319, 928
BmrFI	CCNGG	4 cut(s)	146, 615, 704, 993
BmsI	GCATC	2 cut(s)	443, 568
BpiI	GAAGAC	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	144, 321, 991
BsaXI	ACNNNNNCTCC	2 cut(s)	508, 538
Bsc4I	CCNNNNNNNGG	3 cut(s)	253, 784, 992
Bse118I	RCCGGY	2 cut(s)	773, 1094
BseBI	CCWGG	4 cut(s)	146, 615, 704, 993
BseDI	CCNNGG	3 cut(s)	144, 321, 991
BseGI	GGATG	3 cut(s)	76, 298, 583
BseLI	CCNNNNNNNGG	3 cut(s)	253, 784, 992
BseRI	GAGGAG	2 cut(s)	473, 1033
BseXI	GCAGC	5 cut(s)	22, 227, 817, 1028, 1078
BsgI	GTGCAG	1 cut(s)	1035
BshFI	GGCC	6 cut(s)	109, 149, 773, 777, 888, 996
BsiHKAI	GWGCWC	2 cut(s)	54, 508
BsiSI	CCGG	2 cut(s)	774, 1095
BslFI	GGGAC	2 cut(s)	118, 986
BslI	CCNNNNNNNGG	3 cut(s)	253, 784, 992
BsmAI	GTCTC	3 cut(s)	701, 742, 890
BsmFI	GGGAC	2 cut(s)	118, 986
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	6 cut(s)	109, 149, 773, 777, 888, 996
Bsp1286I	GDGCHC	2 cut(s)	54, 508
Bsp143I	GATC	3 cut(s)	238, 317, 658
BspACI	CCGC	4 cut(s)	379, 939, 983, 1019
BspANI	GGCC	6 cut(s)	109, 149, 773, 777, 888, 996
BspHI	TCATGA	1 cut(s)	825
BspLI	GGNNCC	3 cut(s)	134, 319, 928
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	4 cut(s)	233, 312, 325, 666
BspQI	GCTCTTC	2 cut(s)	369, 407
BsrBI	CCGCTC	2 cut(s)	379, 939
BsrFI	RCCGGY	2 cut(s)	773, 1094
BssAI	RCCGGY	2 cut(s)	773, 1094
BssECI	CCNNGG	3 cut(s)	144, 321, 991
BssMI	GATC	3 cut(s)	238, 317, 658
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	4 cut(s)	146, 615, 704, 993
Bst4CI	ACNGT	2 cut(s)	641, 782
Bst6I	CTCTTC	3 cut(s)	255, 369, 407
BstC8I	GCNNGC	2 cut(s)	775, 890
BstF5I	GGATG	3 cut(s)	76, 298, 583
BstKTI	GATC	3 cut(s)	241, 320, 661
BstMAI	GTCTC	3 cut(s)	701, 742, 890
BstMBI	GATC	3 cut(s)	238, 317, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 284, 802
BstNI	CCWGG	4 cut(s)	146, 615, 704, 993
BstSCI	CCNGG	4 cut(s)	144, 613, 702, 991
BstV1I	GCAGC	5 cut(s)	22, 227, 817, 1028, 1078
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	317, 658
BstYI	RGATCY	2 cut(s)	317, 658
BsuRI	GGCC	6 cut(s)	109, 149, 773, 777, 888, 996
BtgZI	GCGATG	1 cut(s)	105
BtrI	CACGTC	1 cut(s)	922
BtsCI	GGATG	3 cut(s)	76, 298, 583
BtsI	GCAGTG	1 cut(s)	960
BtsIMutI	CAGTG	4 cut(s)	218, 646, 778, 960
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	2 cut(s)	775, 890
CaiI	CAGNNNCTG	1 cut(s)	437
CciI	TCATGA	1 cut(s)	825
Cfr10I	RCCGGY	2 cut(s)	773, 1094
Cfr13I	GGNCC	4 cut(s)	107, 132, 290, 700
Csp6I	GTAC	2 cut(s)	265, 479
CspCI	CAANNNNNGTGG	2 cut(s)	74, 109
CviAII	CATG	2 cut(s)	826, 998
CviQI	GTAC	2 cut(s)	265, 479
DpnI	GATC	3 cut(s)	240, 319, 660
DpnII	GATC	3 cut(s)	238, 317, 658
DriI	GACNNNNNGTC	1 cut(s)	427
EaeI	YGGCCR	3 cut(s)	147, 771, 775
Eam1104I	CTCTTC	3 cut(s)	255, 369, 407
Eam1105I	GACNNNNNGTC	1 cut(s)	427
EarI	CTCTTC	3 cut(s)	255, 369, 407
Eco130I	CCWWGG	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	3 cut(s)	132, 290, 700
Eco57I	CTGAAG	2 cut(s)	393, 1033
EcoO109I	RGGNCCY	1 cut(s)	132
EcoRII	CCWGG	4 cut(s)	144, 613, 702, 991
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	829, 1001
FaqI	GGGAC	2 cut(s)	118, 986
FatI	CATG	2 cut(s)	825, 997
FauNDI	CATATG	1 cut(s)	1072
Fnu4HI	GCNGC	5 cut(s)	11, 216, 806, 1017, 1092
FokI	GGATG	3 cut(s)	83, 285, 590
FseI	GGCCGGCC	1 cut(s)	777
Fsp4HI	GCNGC	5 cut(s)	11, 216, 806, 1017, 1092
FspBI	CTAG	2 cut(s)	500, 797
GluI	GCNGC	5 cut(s)	11, 216, 806, 1017, 1092
HaeIII	GGCC	6 cut(s)	109, 149, 773, 777, 888, 996
HapII	CCGG	2 cut(s)	774, 1095
Hin1II	CATG	2 cut(s)	829, 1001
HinfI	GANTC	7 cut(s)	160, 207, 389, 563, 605, 695, 908
HpaII	CCGG	2 cut(s)	774, 1095
Hpy166II	GTNNAC	3 cut(s)	141, 497, 516
Hpy188I	TCNGA	2 cut(s)	439, 1052
Hpy188III	TCNNGA	2 cut(s)	68, 826
Hpy8I	GTNNAC	3 cut(s)	141, 497, 516
HpyAV	CCTTC	3 cut(s)	40, 720, 1057
HpyCH4III	ACNGT	2 cut(s)	641, 782
HpyCH4IV	ACGT	1 cut(s)	921
HpyCH4V	TGCA	5 cut(s)	10, 62, 404, 892, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 284, 802
HpySE526I	ACGT	1 cut(s)	921
Hsp92II	CATG	2 cut(s)	829, 1001
KroI	GCCGGC	1 cut(s)	773
KroNI	GCCGGC	1 cut(s)	775
Kzo9I	GATC	3 cut(s)	238, 317, 658
LguI	GCTCTTC	2 cut(s)	369, 407
LmnI	GCTCC	4 cut(s)	49, 503, 529, 936
Lsp1109I	GCAGC	5 cut(s)	22, 227, 817, 1028, 1078
LweI	GCATC	2 cut(s)	443, 568
MaeI	CTAG	2 cut(s)	500, 797
MaeII	ACGT	1 cut(s)	921
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	3 cut(s)	240, 319, 660
MbiI	CCGCTC	2 cut(s)	379, 939
MboI	GATC	3 cut(s)	238, 317, 658
MboII	GAAGA	9 cut(s)	47, 272, 338, 386, 424, 438, 611, 653, 823
MfeI	CAATTG	2 cut(s)	405, 509
MflI	RGATCY	2 cut(s)	317, 658
MhlI	GDGCHC	2 cut(s)	54, 508
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	6 cut(s)	184, 334, 405, 424, 440, 509
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	6 cut(s)	451, 568, 778, 838, 1054, 1072
Mox20I	TGGCCA	1 cut(s)	149
MroNI	GCCGGC	1 cut(s)	773
MroXI	GAANNNNTTC	1 cut(s)	730
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	4 cut(s)	282, 344, 570, 681
MslI	CAYNNNNRTG	1 cut(s)	155
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	1019
MspI	CCGG	2 cut(s)	774, 1095
MspR9I	CCNGG	4 cut(s)	146, 615, 704, 993
MunI	CAATTG	2 cut(s)	405, 509
Mva1269I	GAATGC	1 cut(s)	13
MvaI	CCWGG	4 cut(s)	146, 615, 704, 993
MwoI	GCNNNNNNNGC	3 cut(s)	121, 284, 802
NaeI	GCCGGC	1 cut(s)	775
NdeI	CATATG	1 cut(s)	1072
NdeII	GATC	3 cut(s)	238, 317, 658
NgoMIV	GCCGGC	1 cut(s)	773
NlaIII	CATG	2 cut(s)	829, 1001
NlaIV	GGNNCC	3 cut(s)	134, 319, 928
PagI	TCATGA	1 cut(s)	825
PciSI	GCTCTTC	2 cut(s)	369, 407
PctI	GAATGC	1 cut(s)	13
PdiI	GCCGGC	1 cut(s)	775
PdmI	GAANNNNTTC	1 cut(s)	730
PfeI	GAWTC	6 cut(s)	160, 389, 563, 605, 695, 908
PfoI	TCCNGGA	1 cut(s)	702
PkrI	GCNGC	5 cut(s)	12, 217, 807, 1018, 1093
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	29
Psp5II	RGGWCCY	1 cut(s)	132
Psp6I	CCWGG	4 cut(s)	144, 613, 702, 991
PspGI	CCWGG	4 cut(s)	144, 613, 702, 991
PspN4I	GGNNCC	3 cut(s)	134, 319, 928
PspPI	GGNCC	4 cut(s)	107, 132, 290, 700
PspPPI	RGGWCCY	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	317, 658
RigI	GGCCGGCC	1 cut(s)	777
RsaI	GTAC	2 cut(s)	266, 480
RsaNI	GTAC	2 cut(s)	265, 479
RseI	CAYNNNNRTG	1 cut(s)	155
SapI	GCTCTTC	2 cut(s)	369, 407
SaqAI	TTAA	4 cut(s)	282, 344, 570, 681
SatI	GCNGC	5 cut(s)	11, 216, 806, 1017, 1092
Sau3AI	GATC	3 cut(s)	238, 317, 658
Sau96I	GGNCC	4 cut(s)	107, 132, 290, 700
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	4 cut(s)	146, 615, 704, 993
SduI	GDGCHC	2 cut(s)	54, 508
SfaNI	GCATC	2 cut(s)	443, 568
SinI	GGWCC	3 cut(s)	132, 290, 700
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	6 cut(s)	184, 334, 405, 424, 440, 509
SsiI	CCGC	4 cut(s)	379, 939, 983, 1019
SspMI	CTAG	2 cut(s)	500, 797
StyD4I	CCNGG	4 cut(s)	144, 613, 702, 991
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	641, 782
TaiI	ACGT	1 cut(s)	924
TaqI	TCGA	2 cut(s)	33, 90
TaqII	GACCGA	1 cut(s)	688
TasI	AATT	6 cut(s)	184, 334, 405, 424, 440, 509
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	6 cut(s)	160, 389, 563, 605, 695, 908
Tru1I	TTAA	4 cut(s)	282, 344, 570, 681
Tru9I	TTAA	4 cut(s)	282, 344, 570, 681
TscAI	CASTG	4 cut(s)	225, 646, 785, 967
TseI	GCWGC	5 cut(s)	10, 215, 805, 1016, 1091
TspDTI	ATGAA	6 cut(s)	6, 59, 88, 573, 814, 872
TspGWI	ACGGA	2 cut(s)	231, 239
TspRI	CASTG	4 cut(s)	225, 646, 785, 967
VpaK11BI	GGWCC	3 cut(s)	132, 290, 700
XmnI	GAANNNNTTC	1 cut(s)	730
XspI	CTAG	2 cut(s)	500, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.