pre-mRNA-processing factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G10580 |
| fragaria_vesca | FvH4_4g34510 |
| malus_domestica | MD13G1091700.v1.1 MD16G1092300.v1.1 |
| prunus_persica | Prupe.1G254100_v2.0.a1 Prupe.1G254100_v2.0.a1 Prupe.1G254100_v2.0.a1 Prupe.7G165100_v2.0.a1 |
| pyrus_communis | pycom13g07960 pycom16g07870 |
| rosa_chinensis | RchiOBHm_Chr4g0443891 RchiOBHm_Chr5g0051731 RchiOBHm_Chr5g0051741 |
| rosa_laevigata | RLG00000005880 RLG00000006045 |
| rosa_multiflora | Rmu_co8435535.1_g000001 Rmu_sc0010179.1_g000004 Rmu_sc0019062.1_g000007 |
| rosa_roxburghii | Rroxscaffold_5G00384460 |
| rosa_rugosa | Rorug04G0348100 Rorug05G0277100.1 |
| rosa_samantha | Rh4AG408600 Rh4BG419700 Rh4CG433700 Rh4DG414700 Rh5AG349300 Rh5BG360800 Rh5BG360900 Rh5CG385500 Rh5DG375700 |
| rosa_wichuraiana | Rw4G035090 Rw5G033000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 5 |
| AccII | CGCG | 1 cut(s) | 95 |
| AciI | CCGC | 1 cut(s) | 95 |
| AcsI | RAATTY | 2 cut(s) | 305, 338 |
| AfaI | GTAC | 1 cut(s) | 68 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 117 |
| AgsI | TTSAA | 1 cut(s) | 44 |
| AluBI | AGCT | 2 cut(s) | 16, 242 |
| AluI | AGCT | 2 cut(s) | 16, 242 |
| AoxI | GGCC | 1 cut(s) | 144 |
| ApoI | RAATTY | 2 cut(s) | 305, 338 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| AspS9I | GGNCC | 1 cut(s) | 265 |
| AsuHPI | GGTGA | 1 cut(s) | 146 |
| AvaII | GGWCC | 1 cut(s) | 265 |
| BbvCI | CCTCAGC | 1 cut(s) | 243 |
| BccI | CCATC | 2 cut(s) | 112, 266 |
| BceAI | ACGGC | 1 cut(s) | 149 |
| BfaI | CTAG | 1 cut(s) | 269 |
| Bme18I | GGWCC | 1 cut(s) | 265 |
| BmgT120I | GGNCC | 1 cut(s) | 265 |
| BmsI | GCATC | 2 cut(s) | 22, 151 |
| Bpu10I | CCTNAGC | 1 cut(s) | 243 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 117 |
| BseGI | GGATG | 3 cut(s) | 37, 107, 259 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 117 |
| BseMII | CTCAG | 1 cut(s) | 234 |
| BseYI | CCCAGC | 3 cut(s) | 116, 186, 277 |
| Bsh1236I | CGCG | 1 cut(s) | 95 |
| BshFI | GGCC | 1 cut(s) | 146 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 117 |
| BsnI | GGCC | 1 cut(s) | 146 |
| BspACI | CCGC | 1 cut(s) | 95 |
| BspANI | GGCC | 1 cut(s) | 146 |
| BspCNI | CTCAG | 1 cut(s) | 235 |
| BspFNI | CGCG | 1 cut(s) | 95 |
| BstDEI | CTNAG | 1 cut(s) | 243 |
| BstF5I | GGATG | 3 cut(s) | 37, 107, 259 |
| BstFNI | CGCG | 1 cut(s) | 95 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstUI | CGCG | 1 cut(s) | 95 |
| BsuRI | GGCC | 1 cut(s) | 146 |
| BtsCI | GGATG | 3 cut(s) | 37, 107, 259 |
| CfoI | GCGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 1 cut(s) | 265 |
| Csp6I | GTAC | 1 cut(s) | 67 |
| CviAII | CATG | 2 cut(s) | 191, 262 |
| CviJI | RGCY | 6 cut(s) | 16, 21, 90, 146, 242, 277 |
| CviKI_1 | RGCY | 6 cut(s) | 16, 21, 90, 146, 242, 277 |
| CviQI | GTAC | 1 cut(s) | 67 |
| DdeI | CTNAG | 1 cut(s) | 243 |
| DraI | TTTAAA | 1 cut(s) | 303 |
| Eco147I | AGGCCT | 1 cut(s) | 146 |
| Eco47I | GGWCC | 1 cut(s) | 265 |
| FaeI | CATG | 2 cut(s) | 194, 265 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 37 |
| FatI | CATG | 2 cut(s) | 190, 261 |
| FokI | GGATG | 3 cut(s) | 44, 94, 266 |
| FspBI | CTAG | 1 cut(s) | 269 |
| FspI | TGCGCA | 1 cut(s) | 5 |
| GlaI | GCGC | 1 cut(s) | 5 |
| GsaI | CCCAGC | 3 cut(s) | 120, 190, 281 |
| HaeIII | GGCC | 1 cut(s) | 146 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin1II | CATG | 2 cut(s) | 194, 265 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HincII | GTYRAC | 1 cut(s) | 100 |
| HindII | GTYRAC | 1 cut(s) | 100 |
| HinfI | GANTC | 1 cut(s) | 44 |
| HphI | GGTGA | 1 cut(s) | 146 |
| Hpy166II | GTNNAC | 1 cut(s) | 100 |
| Hpy8I | GTNNAC | 1 cut(s) | 100 |
| HpyAV | CCTTC | 1 cut(s) | 58 |
| HpyCH4V | TGCA | 1 cut(s) | 151 |
| HpyF3I | CTNAG | 1 cut(s) | 243 |
| Hsp92II | CATG | 2 cut(s) | 194, 265 |
| HspAI | GCGC | 1 cut(s) | 4 |
| LpnPI | CCDG | 3 cut(s) | 102, 200, 263 |
| LweI | GCATC | 2 cut(s) | 22, 151 |
| MaeI | CTAG | 1 cut(s) | 269 |
| MboII | GAAGA | 4 cut(s) | 46, 166, 211, 214 |
| MluCI | AATT | 4 cut(s) | 124, 230, 305, 338 |
| MnlI | CCTC | 6 cut(s) | 22, 121, 136, 216, 229, 238 |
| MseI | TTAA | 1 cut(s) | 302 |
| MslI | CAYNNNNRTG | 1 cut(s) | 84 |
| MvnI | CGCG | 1 cut(s) | 95 |
| NlaIII | CATG | 2 cut(s) | 194, 265 |
| NsbI | TGCGCA | 1 cut(s) | 5 |
| PceI | AGGCCT | 1 cut(s) | 146 |
| PfeI | GAWTC | 1 cut(s) | 44 |
| PspFI | CCCAGC | 3 cut(s) | 116, 186, 277 |
| PspPI | GGNCC | 1 cut(s) | 265 |
| RsaI | GTAC | 1 cut(s) | 68 |
| RsaNI | GTAC | 1 cut(s) | 67 |
| RseI | CAYNNNNRTG | 1 cut(s) | 84 |
| SaqAI | TTAA | 1 cut(s) | 302 |
| Sau96I | GGNCC | 1 cut(s) | 265 |
| SetI | ASST | 3 cut(s) | 18, 244, 270 |
| SfaNI | GCATC | 2 cut(s) | 22, 151 |
| SinI | GGWCC | 1 cut(s) | 265 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 84 |
| Sse9I | AATT | 4 cut(s) | 124, 230, 305, 338 |
| SseBI | AGGCCT | 1 cut(s) | 146 |
| SsiI | CCGC | 1 cut(s) | 95 |
| SspMI | CTAG | 1 cut(s) | 269 |
| StuI | AGGCCT | 1 cut(s) | 146 |
| TaqI | TCGA | 1 cut(s) | 57 |
| TasI | AATT | 4 cut(s) | 124, 230, 305, 338 |
| TatI | WGTACW | 1 cut(s) | 66 |
| TfiI | GAWTC | 1 cut(s) | 44 |
| Tru1I | TTAA | 1 cut(s) | 302 |
| Tru9I | TTAA | 1 cut(s) | 302 |
| TspDTI | ATGAA | 1 cut(s) | 40 |
| VpaK11BI | GGWCC | 1 cut(s) | 265 |
| XapI | RAATTY | 2 cut(s) | 305, 338 |
| XspI | CTAG | 1 cut(s) | 269 |