Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004435

Physical Location & Seq

Genomic Coordinates Forward (+)

3826257 .. 3829194

Gene Structure 2938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006045

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGACCAAAACCCTAACTCCTCCCCGGAATCTTCGCCTCCGTAGCTCCTCCAAGGCTCCAACCCAAGTCCACTGCGCCCTAGGACGGCCTCGCCCAGGGCATGCGCAACCACAAGCTAGGGTCGTCGAGGATGCCGCCAAGCCCTTCATCTTTGACGAGCAGTACGATACTTTCCAGAACTACGGCTACGCCACCGATCCCTCCGCCTCCGTCGGCTACAATTACATCGGCGATTTGGCCGCCTTGCAGAAAAACAATGCCGTTTTGGTGTACAATGACCCCCAGCACGAGCAGAAGAAGAGGAAGATTGAGAAGAGGAAGGAGAACAGCAACGAAGAAGAAGACGCTGAGATGGACCCGGACGAGAATAAGAAGAGTCCATGGGCCGGAAAGAAGGAGGGTTTGCCGATGAAGCTGACGGAGGAGAAGAAGAAATATGCAGAGGAATATGCTAAGAAGAAAGGTGAAGAGAAAGGCGCCGGCAACAAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071007 GO:0071013 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

WD40

Protein Analysis

165

Amino Acids

18.53

Weight (kDa)

8.96

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10580
fragaria_vesca	FvH4_4g34510
malus_domestica	MD13G1091700.v1.1 MD16G1092300.v1.1
prunus_persica	Prupe.1G254100_v2.0.a1 Prupe.1G254100_v2.0.a1 Prupe.1G254100_v2.0.a1 Prupe.7G165100_v2.0.a1
pyrus_communis	pycom13g07960 pycom16g07870
rosa_chinensis	RchiOBHm_Chr4g0443891 RchiOBHm_Chr5g0051731 RchiOBHm_Chr5g0051741
rosa_laevigata	RLG00000005880 RLG00000006045
rosa_multiflora	Rmu_co8435535.1_g000001 Rmu_sc0010179.1_g000004 Rmu_sc0019062.1_g000007
rosa_roxburghii	Rroxscaffold_5G00384460
rosa_rugosa	Rorug04G0348100 Rorug05G0277100.1
rosa_samantha	Rh4AG408600 Rh4BG419700 Rh4CG433700 Rh4DG414700 Rh5AG349300 Rh5BG360800 Rh5BG360900 Rh5CG385500 Rh5DG375700
rosa_wichuraiana	Rw4G035090 Rw5G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	476
AciI	CCGC	3 cut(s)	135, 204, 240
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	2 cut(s)	164, 272
AfiI	CCNNNNNNNGG	3 cut(s)	84, 95, 386
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	3 cut(s)	45, 116, 415
AluI	AGCT	3 cut(s)	45, 116, 415
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	3 cut(s)	86, 237, 384
AspA2I	CCTAGG	1 cut(s)	79
AspLEI	GCGC	3 cut(s)	77, 106, 479
AspS9I	GGNCC	2 cut(s)	355, 384
AsuC2I	CCSGG	2 cut(s)	25, 359
AsuHPI	GGTGA	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	355
AvrII	CCTAGG	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	476
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	348
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	3 cut(s)	101, 199, 245
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	2 cut(s)	25, 359
BfaI	CTAG	2 cut(s)	80, 117
BfoI	RGCGCY	1 cut(s)	480
BisI	GCNGC	2 cut(s)	135, 240
BlnI	CCTAGG	1 cut(s)	79
BlsI	GCNGC	2 cut(s)	136, 241
Bme1390I	CCNGG	3 cut(s)	25, 96, 359
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	355, 384
BmiI	GGNNCC	3 cut(s)	57, 357, 478
BmrFI	CCNGG	3 cut(s)	25, 96, 359
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	348
BpuMI	CCSGG	2 cut(s)	25, 359
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	6 cut(s)	23, 51, 79, 94, 95, 380
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	3 cut(s)	84, 95, 386
Bse118I	RCCGGY	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	6 cut(s)	23, 51, 79, 94, 95, 380
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	3 cut(s)	84, 95, 386
BseMII	CTCAG	1 cut(s)	339
BseRI	GAGGAG	3 cut(s)	9, 37, 437
BseYI	CCCAGC	1 cut(s)	282
BshFI	GGCC	3 cut(s)	88, 239, 386
BshNI	GGYRCC	1 cut(s)	476
BsiSI	CCGG	4 cut(s)	25, 359, 387, 480
BslI	CCNNNNNNNGG	3 cut(s)	84, 95, 386
BsnI	GGCC	3 cut(s)	88, 239, 386
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	3 cut(s)	135, 204, 240
BspANI	GGCC	3 cut(s)	88, 239, 386
BspCNI	CTCAG	1 cut(s)	340
BspLI	GGNNCC	3 cut(s)	57, 357, 478
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	476
BsrFI	RCCGGY	1 cut(s)	479
BsrGI	TGTACA	1 cut(s)	270
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	6 cut(s)	23, 51, 79, 94, 95, 380
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	477
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	3 cut(s)	51, 79, 380
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	96
Bst6I	CTCTTC	4 cut(s)	293, 308, 368, 462
BstACI	GRCGYC	1 cut(s)	477
BstAUI	TGTACA	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	102, 481
BstDEI	CTNAG	2 cut(s)	348, 453
BstDSI	CCRYGG	1 cut(s)	380
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	3 cut(s)	77, 106, 479
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 412
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	3 cut(s)	23, 94, 357
BstV2I	GAAGAC	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	88, 239, 386
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	102, 481
CfoI	GCGC	3 cut(s)	77, 106, 479
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	2 cut(s)	355, 384
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	2 cut(s)	163, 271
CviAII	CATG	2 cut(s)	101, 381
CviQI	GTAC	2 cut(s)	163, 271
DdeI	CTNAG	2 cut(s)	348, 453
DinI	GGCGCC	1 cut(s)	478
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	4 cut(s)	293, 308, 368, 462
EarI	CTCTTC	4 cut(s)	293, 308, 368, 462
EciI	GGCGGA	1 cut(s)	193
Eco130I	CCWWGG	3 cut(s)	51, 79, 380
Eco47I	GGWCC	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	3 cut(s)	51, 79, 380
EgeI	GGCGCC	1 cut(s)	478
EheI	GGCGCC	1 cut(s)	478
ErhI	CCWWGG	3 cut(s)	51, 79, 380
FaeI	CATG	2 cut(s)	104, 384
FaiI	YATR	4 cut(s)	102, 382, 438, 450
FatI	CATG	2 cut(s)	100, 380
Fnu4HI	GCNGC	2 cut(s)	135, 240
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	135, 240
FspBI	CTAG	2 cut(s)	80, 117
FspI	TGCGCA	1 cut(s)	105
GlaI	GCGC	3 cut(s)	76, 105, 478
GluI	GCNGC	2 cut(s)	135, 240
GsaI	CCCAGC	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	88, 239, 386
HapII	CCGG	4 cut(s)	25, 359, 387, 480
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	3 cut(s)	77, 106, 479
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	2 cut(s)	104, 384
Hin6I	GCGC	3 cut(s)	75, 104, 477
HinP1I	GCGC	3 cut(s)	75, 104, 477
HinfI	GANTC	2 cut(s)	28, 376
HpaII	CCGG	4 cut(s)	25, 359, 387, 480
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	2 cut(s)	70, 271
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	2 cut(s)	70, 271
Hpy99I	CGWCG	2 cut(s)	128, 215
HpyAV	CCTTC	3 cut(s)	154, 313, 388
HpyCH4V	TGCA	2 cut(s)	247, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 412
HpyF3I	CTNAG	2 cut(s)	348, 453
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	2 cut(s)	104, 384
HspAI	GCGC	3 cut(s)	75, 104, 477
KasI	GGCGCC	1 cut(s)	476
KroI	GCCGGC	1 cut(s)	479
KroNI	GCCGGC	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	2 cut(s)	50, 61
LpnPI	CCDG	7 cut(s)	38, 81, 108, 188, 296, 372, 400
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	2 cut(s)	80, 117
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MluCI	AATT	1 cut(s)	220
Mly113I	GGCGCC	1 cut(s)	477
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	83
MroNI	GCCGGC	1 cut(s)	479
MspI	CCGG	4 cut(s)	25, 359, 387, 480
MspR9I	CCNGG	3 cut(s)	25, 96, 359
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	42, 412
NaeI	GCCGGC	1 cut(s)	481
NarI	GGCGCC	1 cut(s)	477
NciI	CCSGG	2 cut(s)	25, 359
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	1 cut(s)	196
NgoMIV	GCCGGC	1 cut(s)	479
NlaIII	CATG	2 cut(s)	104, 384
NlaIV	GGNNCC	3 cut(s)	57, 357, 478
NsbI	TGCGCA	1 cut(s)	105
NspI	RCATGY	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	104
PasI	CCCWGGG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	136, 241
PleI	GAGTC	1 cut(s)	384
PluTI	GGCGCC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	94
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	3 cut(s)	57, 357, 478
PspPI	GGNCC	2 cut(s)	355, 384
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
RsaI	GTAC	2 cut(s)	164, 272
RsaNI	GTAC	2 cut(s)	163, 271
SatI	GCNGC	2 cut(s)	135, 240
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	2 cut(s)	355, 384
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	3 cut(s)	25, 96, 359
SetI	ASST	4 cut(s)	47, 118, 417, 466
SfaNI	GCATC	1 cut(s)	121
SfoI	GGCGCC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	355
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	3 cut(s)	135, 204, 240
SspDI	GGCGCC	1 cut(s)	476
SspMI	CTAG	2 cut(s)	80, 117
StyD4I	CCNGG	3 cut(s)	23, 94, 357
StyI	CCWWGG	3 cut(s)	51, 79, 380
TaqI	TCGA	1 cut(s)	126
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	2 cut(s)	137, 242
TfiI	GAWTC	1 cut(s)	28
TscAI	CASTG	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	136, 425
TspGWI	ACGGA	3 cut(s)	29, 199, 434
TspRI	CASTG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	355
XagI	CCTNNNNNAGG	1 cut(s)	93
XceI	RCATGY	1 cut(s)	104
XmaJI	CCTAGG	1 cut(s)	79
XspI	CTAG	2 cut(s)	80, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.