Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004435

Physical Location & Seq

Genomic Coordinates Forward (+)

53066116 .. 53066613

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGATCTTCTCCAAGCCTATTACGACCAACTGGACGATGATTTGGGCCGTTCAGAGGACCACAACCAAAACCCTAATTTCACATCGTCCCCAGAAGCTTCGCCACCAAGGCTCCTCCTCCAAGCCAAGTCCGCCGCACCACCCACGGTGGAAAAGACATTGTCAACGCCCATCGATCCCACCCAGCAGCACCTTGTCCACTTCAACCCTAACTTCTACGGCCCACAGCTGTCATGCATACGCAACCACAACCTTGGCTTCGTTGAAGACGCCTCCATCGAGCCCTTCGCCTTCCACGAGCAGTACAATACCTTCCAAATTTATGGCTACGCCGCCGATCCCTCCGCCTCTGACTTCGGCCATAGAGAGAACGACGCCGTTTCCATGTACAATGTACCGCAGCACGAGCAGAAAAAGAAGCGCAAGATTGAAAAGAGCAAGGTATCGGATGAGGGTTTGCCGGCTGAGCTAACGGAGGAGCAGAGGAAATACGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071007 GO:0071013 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

WD40

Protein Analysis

165

Amino Acids

18.75

Weight (kDa)

5.05

Isoelectric Point (pI)

61.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10580
fragaria_vesca	FvH4_4g34510
malus_domestica	MD13G1091700.v1.1 MD16G1092300.v1.1
prunus_persica	Prupe.1G254100_v2.0.a1 Prupe.1G254100_v2.0.a1 Prupe.1G254100_v2.0.a1 Prupe.7G165100_v2.0.a1
pyrus_communis	pycom13g07960 pycom16g07870
rosa_chinensis	RchiOBHm_Chr4g0443891 RchiOBHm_Chr5g0051731 RchiOBHm_Chr5g0051741
rosa_laevigata	RLG00000005880 RLG00000006045
rosa_multiflora	Rmu_co8435535.1_g000001 Rmu_sc0010179.1_g000004 Rmu_sc0019062.1_g000007
rosa_roxburghii	Rroxscaffold_5G00384460
rosa_rugosa	Rorug04G0348100 Rorug05G0277100.1
rosa_samantha	Rh4AG408600 Rh4BG419700 Rh4CG433700 Rh4DG414700 Rh5AG349300 Rh5BG360800 Rh5BG360900 Rh5CG385500 Rh5DG375700
rosa_wichuraiana	Rw4G035090 Rw5G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	132, 135, 333, 345, 398
AclWI	GGATC	3 cut(s)	12, 170, 332
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	318
AcyI	GRCGYC	2 cut(s)	270, 375
AfaI	GTAC	3 cut(s)	305, 389, 396
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	3 cut(s)	205, 266, 431
AluBI	AGCT	3 cut(s)	98, 229, 469
AluI	AGCT	3 cut(s)	98, 229, 469
AlwI	GGATC	3 cut(s)	12, 170, 332
AoxI	GGCC	3 cut(s)	46, 220, 358
ApeKI	GCWGC	2 cut(s)	187, 400
ApoI	RAATTY	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	3 cut(s)	46, 58, 221
AvaII	GGWCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BauI	CACGAG	2 cut(s)	296, 404
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	199, 412
BccI	CCATC	2 cut(s)	179, 284
BceAI	ACGGC	3 cut(s)	33, 235, 362
BglI	GCCNNNNNGGC	1 cut(s)	109
BisI	GCNGC	4 cut(s)	135, 188, 333, 401
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	4 cut(s)	136, 189, 334, 402
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	3 cut(s)	46, 58, 221
BmiI	GGNNCC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	273
Bpu1102I	GCTNAGC	1 cut(s)	465
Bsa29I	ATCGAT	1 cut(s)	174
BsaHI	GRCGYC	2 cut(s)	270, 375
BsaJI	CCNNGG	3 cut(s)	107, 144, 253
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	107, 144, 253
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	3 cut(s)	104, 107, 491
BseXI	GCAGC	2 cut(s)	199, 412
BseYI	CCCAGC	1 cut(s)	183
BshFI	GGCC	3 cut(s)	48, 222, 360
BshVI	ATCGAT	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	3 cut(s)	48, 222, 360
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	387
Bsp143I	GATC	3 cut(s)	4, 175, 337
Bsp1720I	GCTNAGC	1 cut(s)	465
BspACI	CCGC	5 cut(s)	132, 135, 333, 345, 398
BspANI	GGCC	3 cut(s)	48, 222, 360
BspCNI	CTCAG	1 cut(s)	457
BspDI	ATCGAT	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	113
BspPI	GGATC	3 cut(s)	12, 170, 332
BsrFI	RCCGGY	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	387
BsrI	ACTGG	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	3 cut(s)	107, 144, 253
BssMI	GATC	3 cut(s)	4, 175, 337
BssNI	GRCGYC	2 cut(s)	270, 375
BssSI	CACGAG	2 cut(s)	296, 404
BssT1I	CCWWGG	2 cut(s)	107, 253
Bst2BI	CACGAG	2 cut(s)	296, 404
Bst4CI	ACNGT	1 cut(s)	148
BstACI	GRCGYC	2 cut(s)	270, 375
BstAUI	TGTACA	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	1 cut(s)	465
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	454
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	3 cut(s)	7, 178, 340
BstMBI	GATC	3 cut(s)	4, 175, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 131, 406, 466
BstV1I	GCAGC	2 cut(s)	199, 412
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	2 cut(s)	254, 323
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	48, 222, 360
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	423
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	3 cut(s)	46, 58, 221
ClaI	ATCGAT	1 cut(s)	174
CseI	GACGC	2 cut(s)	278, 383
Csp6I	GTAC	3 cut(s)	304, 388, 395
CviAII	CATG	2 cut(s)	234, 385
CviQI	GTAC	3 cut(s)	304, 388, 395
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	3 cut(s)	6, 177, 339
DpnII	GATC	3 cut(s)	4, 175, 337
EaeI	YGGCCR	1 cut(s)	358
EciI	GGCGGA	2 cut(s)	121, 334
Eco130I	CCWWGG	2 cut(s)	107, 253
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	58
EcoT14I	CCWWGG	2 cut(s)	107, 253
EcoT22I	ATGCAT	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	2 cut(s)	107, 253
FaeI	CATG	2 cut(s)	237, 388
FaiI	YATR	6 cut(s)	235, 239, 324, 363, 386, 496
FaqI	GGGAC	1 cut(s)	73
FatI	CATG	2 cut(s)	233, 384
Fnu4HI	GCNGC	4 cut(s)	135, 188, 333, 401
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	135, 188, 333, 401
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	4 cut(s)	135, 188, 333, 401
GsaI	CCCAGC	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	48, 222, 360
HapII	CCGG	1 cut(s)	461
HgaI	GACGC	2 cut(s)	278, 383
HhaI	GCGC	1 cut(s)	423
Hin1I	GRCGYC	2 cut(s)	270, 375
Hin1II	CATG	2 cut(s)	237, 388
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	96
HpaII	CCGG	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	165, 199
Hpy188I	TCNGA	3 cut(s)	55, 352, 448
Hpy8I	GTNNAC	2 cut(s)	165, 199
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	295, 301, 322
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 131, 406, 466
HpyF3I	CTNAG	1 cut(s)	465
Hsp92I	GRCGYC	2 cut(s)	270, 375
Hsp92II	CATG	2 cut(s)	237, 388
HspAI	GCGC	1 cut(s)	421
KroI	GCCGGC	1 cut(s)	460
KroNI	GCCGGC	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	4, 175, 337
LmnI	GCTCC	2 cut(s)	117, 478
LpnPI	CCDG	4 cut(s)	17, 105, 197, 474
Lsp1109I	GCAGC	2 cut(s)	199, 412
MalI	GATC	3 cut(s)	6, 177, 339
MboI	GATC	3 cut(s)	4, 175, 337
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	2 cut(s)	76, 318
MnlI	CCTC	9 cut(s)	49, 125, 128, 283, 352, 358, 445, 469, 477
Mph1103I	ATGCAT	1 cut(s)	239
MroNI	GCCGGC	1 cut(s)	460
MspA1I	CMGCKG	1 cut(s)	229
MspI	CCGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	4 cut(s)	109, 131, 406, 466
NaeI	GCCGGC	1 cut(s)	462
NdeII	GATC	3 cut(s)	4, 175, 337
NgoMIV	GCCGGC	1 cut(s)	460
NlaIII	CATG	2 cut(s)	237, 388
NlaIV	GGNNCC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 294
PdiI	GCCGGC	1 cut(s)	462
PflFI	GACNNNGTC	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	136, 189, 334, 402
PspFI	CCCAGC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	3 cut(s)	46, 58, 221
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	3 cut(s)	305, 389, 396
RsaNI	GTAC	3 cut(s)	304, 388, 395
SatI	GCNGC	4 cut(s)	135, 188, 333, 401
Sau3AI	GATC	3 cut(s)	4, 175, 337
Sau96I	GGNCC	3 cut(s)	46, 58, 221
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	7 cut(s)	100, 195, 231, 255, 314, 444, 471
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	2 cut(s)	76, 318
SsiI	CCGC	5 cut(s)	132, 135, 333, 345, 398
StyI	CCWWGG	2 cut(s)	107, 253
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	174, 279
TasI	AATT	2 cut(s)	76, 318
TatI	WGTACW	2 cut(s)	303, 387
TauI	GCSGC	2 cut(s)	137, 335
TseI	GCWGC	2 cut(s)	187, 400
TspGWI	ACGGA	1 cut(s)	488
Tth111I	GACNNNGTC	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	1 cut(s)	318
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.