Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019062.1

Orthogroup ID

OG0004435

Physical Location & Seq

Genomic Coordinates Forward (+)

28374 .. 29165

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019062.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atggatctcctccaagcctactccgacgaccaaaaccctaattcctccccggaatcttcgcctccgcggctcctcccacccaagtccgccgcgccccaggtcgacgacaccatgctggccctgtcggtggccaagaaccgcagcgtattgtcccggcccatcgacccgacgcagcacctcgtcgacttcaacccgacctacgaccagctctgggccccaatctacggcccatctcacccttacgccaaggacggcctcgcccagggcatgcgcaaccacaagctagggttcgtcgaggacgccgccatcgagcccttcattttcgacgagcagtacaacactttccagaactacggctacgccgccgacccctccgcctccgccggctacaattacgtcggcgatttggccgccttgcagaaaaacgacgccgtttcggtgtacaacatcccccagcacgagcagaagaagcggaagattgagaagaggaaggagaacgaggatggtgaagaagacgccgagatggacccggaggaggtggcgaacccggccagcgacgcgtggctgatgaagaataagaagagcccatgggccgggaagaaggagggtttgccggcggagctgacggaggagcagaagaaatatgcagaggaatatgcgaagaagaaaggtgaagagaaaggtgccggcgacaagggagaggctgtggtcgagaagactactttccacggcaaagaagagagagactatcaaggaaggtcttggattgcgccgccgagagatgccaaggct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071007 GO:0071013 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

WD40

Protein Analysis

264

Amino Acids

29.49

Weight (kDa)

5.01

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004435)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10580
fragaria_vesca	FvH4_4g34510
malus_domestica	MD13G1091700.v1.1 MD16G1092300.v1.1
prunus_persica	Prupe.1G254100_v2.0.a1 Prupe.1G254100_v2.0.a1 Prupe.1G254100_v2.0.a1 Prupe.7G165100_v2.0.a1
pyrus_communis	pycom13g07960 pycom16g07870
rosa_chinensis	RchiOBHm_Chr4g0443891 RchiOBHm_Chr5g0051731 RchiOBHm_Chr5g0051741
rosa_laevigata	RLG00000005880 RLG00000006045
rosa_multiflora	Rmu_co8435535.1_g000001 Rmu_sc0010179.1_g000004 Rmu_sc0019062.1_g000007
rosa_roxburghii	Rroxscaffold_5G00384460
rosa_rugosa	Rorug04G0348100 Rorug05G0277100.1
rosa_samantha	Rh4AG408600 Rh4BG419700 Rh4CG433700 Rh4DG414700 Rh5AG349300 Rh5BG360800 Rh5BG360900 Rh5CG385500 Rh5DG375700
rosa_wichuraiana	Rw4G035090 Rw5G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	683
AccI	GTMKAC	2 cut(s)	102, 183
AccII	CGCG	3 cut(s)	67, 92, 560
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	3 cut(s)	129, 408, 549
AcyI	GRCGYC	3 cut(s)	300, 429, 516
AfaI	GTAC	2 cut(s)	335, 443
AfiI	CCNNNNNNNGG	6 cut(s)	127, 211, 224, 262, 535, 593
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	96, 261
AluBI	AGCT	3 cut(s)	208, 283, 622
AluI	AGCT	3 cut(s)	208, 283, 622
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	9 cut(s)	117, 129, 155, 213, 226, 253, 408, 549, 591
ApaI	GGGCCC	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	141, 172
AspLEI	GCGC	3 cut(s)	94, 273, 772
AspS9I	GGNCC	7 cut(s)	118, 156, 213, 214, 227, 526, 591
AsuC2I	CCSGG	5 cut(s)	50, 154, 530, 548, 595
AsuHPI	GGTGA	3 cut(s)	227, 518, 683
AvaII	GGWCC	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	3 cut(s)	217, 315, 587
BauI	CACGAG	1 cut(s)	458
BbsI	GAAGAC	2 cut(s)	519, 722
BbvI	GCAGC	2 cut(s)	153, 184
BccI	CCATC	5 cut(s)	167, 238, 314, 497, 517
BceAI	ACGGC	5 cut(s)	241, 268, 370, 416, 745
BciT130I	CCWGG	2 cut(s)	98, 263
BcnI	CCSGG	5 cut(s)	50, 154, 530, 548, 595
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	67
BisI	GCNGC	8 cut(s)	68, 90, 142, 173, 303, 363, 411, 773
BlsI	GCNGC	8 cut(s)	69, 91, 143, 174, 304, 364, 412, 774
Bme1390I	CCNGG	7 cut(s)	50, 98, 154, 263, 530, 548, 595
Bme18I	GGWCC	1 cut(s)	526
BmgT120I	GGNCC	7 cut(s)	118, 156, 213, 214, 227, 526, 591
BmiI	GGNNCC	5 cut(s)	71, 215, 216, 528, 685
BmrFI	CCNGG	7 cut(s)	50, 98, 154, 263, 530, 548, 595
BmsI	GCATC	1 cut(s)	772
BpiI	GAAGAC	2 cut(s)	519, 722
BpuMI	CCSGG	5 cut(s)	50, 154, 530, 548, 595
BsaHI	GRCGYC	3 cut(s)	300, 429, 516
BsaJI	CCNNGG	9 cut(s)	48, 65, 96, 246, 261, 262, 587, 727, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 211, 224, 262, 535, 593
Bse118I	RCCGGY	3 cut(s)	383, 613, 686
BseBI	CCWGG	2 cut(s)	98, 263
BseDI	CCNNGG	9 cut(s)	48, 65, 96, 246, 261, 262, 587, 727, 786
BseGI	GGATG	2 cut(s)	447, 508
BseLI	CCNNNNNNNGG	6 cut(s)	127, 211, 224, 262, 535, 593
BseRI	GAGGAG	3 cut(s)	62, 548, 644
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	153, 184
BseYI	CCCAGC	1 cut(s)	453
Bsh1236I	CGCG	3 cut(s)	67, 92, 560
BshFI	GGCC	9 cut(s)	119, 131, 157, 215, 228, 255, 410, 551, 593
BshNI	GGYRCC	1 cut(s)	683
BsiSI	CCGG	8 cut(s)	50, 154, 384, 530, 548, 594, 614, 687
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	6 cut(s)	127, 211, 224, 262, 535, 593
BsmAI	GTCTC	1 cut(s)	738
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	9 cut(s)	119, 131, 157, 215, 228, 255, 410, 551, 593
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	3 cut(s)	217, 315, 587
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	1 cut(s)	4
Bsp19I	CCATGG	1 cut(s)	587
BspANI	GGCC	9 cut(s)	119, 131, 157, 215, 228, 255, 410, 551, 593
BspFNI	CGCG	3 cut(s)	67, 92, 560
BspLI	GGNNCC	5 cut(s)	71, 215, 216, 528, 685
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	683
BsrFI	RCCGGY	3 cut(s)	383, 613, 686
BsrGI	TGTACA	1 cut(s)	441
BssAI	RCCGGY	3 cut(s)	383, 613, 686
BssECI	CCNNGG	9 cut(s)	48, 65, 96, 246, 261, 262, 587, 727, 786
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	3 cut(s)	300, 429, 516
BssSI	CACGAG	1 cut(s)	458
BssT1I	CCWWGG	3 cut(s)	246, 587, 786
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	2 cut(s)	98, 263
Bst6I	CTCTTC	4 cut(s)	479, 575, 669, 732
BstACI	GRCGYC	3 cut(s)	300, 429, 516
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	6 cut(s)	117, 269, 385, 553, 615, 688
BstDSI	CCRYGG	3 cut(s)	65, 587, 727
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	447, 508
BstFNI	CGCG	3 cut(s)	67, 92, 560
BstHHI	GCGC	3 cut(s)	94, 273, 772
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 469, 548, 557, 619
BstNI	CCWGG	2 cut(s)	98, 263
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	7 cut(s)	48, 96, 152, 261, 528, 546, 593
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	3 cut(s)	67, 92, 560
BstV1I	GCAGC	2 cut(s)	153, 184
BstV2I	GAAGAC	2 cut(s)	519, 722
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	9 cut(s)	119, 131, 157, 215, 228, 255, 410, 551, 593
BtgI	CCRYGG	3 cut(s)	65, 587, 727
BtsCI	GGATG	2 cut(s)	447, 508
Cac8I	GCNNGC	6 cut(s)	117, 269, 385, 553, 615, 688
CfoI	GCGC	3 cut(s)	94, 273, 772
Cfr10I	RCCGGY	3 cut(s)	383, 613, 686
Cfr13I	GGNCC	7 cut(s)	118, 156, 213, 214, 227, 526, 591
Cfr42I	CCGCGG	1 cut(s)	68
CseI	GACGC	5 cut(s)	178, 308, 437, 524, 566
Csp6I	GTAC	2 cut(s)	334, 442
CviAII	CATG	3 cut(s)	112, 268, 588
CviQI	GTAC	2 cut(s)	334, 442
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	3 cut(s)	129, 408, 549
Eam1104I	CTCTTC	4 cut(s)	479, 575, 669, 732
EarI	CTCTTC	4 cut(s)	479, 575, 669, 732
EciI	GGCGGA	4 cut(s)	76, 364, 370, 632
Eco130I	CCWWGG	3 cut(s)	246, 587, 786
Eco24I	GRGCYC	3 cut(s)	217, 315, 587
Eco47I	GGWCC	1 cut(s)	526
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	96, 261
EcoT14I	CCWWGG	3 cut(s)	246, 587, 786
EcoT38I	GRGCYC	3 cut(s)	217, 315, 587
ErhI	CCWWGG	3 cut(s)	246, 587, 786
FaeI	CATG	3 cut(s)	115, 271, 591
FaiI	YATR	5 cut(s)	113, 269, 589, 645, 657
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	3 cut(s)	111, 267, 587
FblI	GTMKAC	2 cut(s)	102, 183
Fnu4HI	GCNGC	8 cut(s)	68, 90, 142, 173, 303, 363, 411, 773
FokI	GGATG	2 cut(s)	434, 515
FriOI	GRGCYC	3 cut(s)	217, 315, 587
Fsp4HI	GCNGC	8 cut(s)	68, 90, 142, 173, 303, 363, 411, 773
FspBI	CTAG	1 cut(s)	284
FspI	TGCGCA	1 cut(s)	272
GlaI	GCGC	3 cut(s)	93, 272, 771
GluI	GCNGC	8 cut(s)	68, 90, 142, 173, 303, 363, 411, 773
GsaI	CCCAGC	1 cut(s)	457
HaeIII	GGCC	9 cut(s)	119, 131, 157, 215, 228, 255, 410, 551, 593
HapII	CCGG	8 cut(s)	50, 154, 384, 530, 548, 594, 614, 687
HgaI	GACGC	5 cut(s)	178, 308, 437, 524, 566
HhaI	GCGC	3 cut(s)	94, 273, 772
Hin1I	GRCGYC	3 cut(s)	300, 429, 516
Hin1II	CATG	3 cut(s)	115, 271, 591
Hin6I	GCGC	3 cut(s)	92, 271, 770
HinP1I	GCGC	3 cut(s)	92, 271, 770
HincII	GTYRAC	2 cut(s)	103, 184
HindII	GTYRAC	2 cut(s)	103, 184
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	8 cut(s)	50, 154, 384, 530, 548, 594, 614, 687
HphI	GGTGA	3 cut(s)	227, 518, 683
Hpy166II	GTNNAC	3 cut(s)	103, 184, 442
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	346, 712
Hpy8I	GTNNAC	3 cut(s)	103, 184, 442
Hpy99I	CGWCG	9 cut(s)	29, 107, 172, 185, 296, 329, 401, 431, 560
HpyAV	CCTTC	4 cut(s)	325, 484, 595, 750
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	2 cut(s)	418, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 469, 548, 557, 619
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	3 cut(s)	300, 429, 516
Hsp92II	CATG	3 cut(s)	115, 271, 591
HspAI	GCGC	3 cut(s)	92, 271, 770
KroI	GCCGGC	3 cut(s)	383, 613, 686
KroNI	GCCGGC	3 cut(s)	385, 615, 688
KspI	CCGCGG	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	575
LmnI	GCTCC	3 cut(s)	75, 619, 631
Lsp1109I	GCAGC	2 cut(s)	153, 184
LweI	GCATC	1 cut(s)	772
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	396
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	217, 315, 587
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	40, 391
MluI	ACGCGT	1 cut(s)	558
MluNI	TGGCCA	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	48
Mox20I	TGGCCA	1 cut(s)	131
MroNI	GCCGGC	3 cut(s)	383, 613, 686
MscI	TGGCCA	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	8 cut(s)	50, 154, 384, 530, 548, 594, 614, 687
MspR9I	CCNGG	7 cut(s)	50, 98, 154, 263, 530, 548, 595
MvaI	CCWGG	2 cut(s)	98, 263
MvnI	CGCG	3 cut(s)	67, 92, 560
MwoI	GCNNNNNNNGC	5 cut(s)	67, 469, 548, 557, 619
NaeI	GCCGGC	3 cut(s)	385, 615, 688
NciI	CCSGG	5 cut(s)	50, 154, 530, 548, 595
NcoI	CCATGG	1 cut(s)	587
NdeII	GATC	1 cut(s)	4
NgoMIV	GCCGGC	3 cut(s)	383, 613, 686
NlaIII	CATG	3 cut(s)	115, 271, 591
NlaIV	GGNNCC	5 cut(s)	71, 215, 216, 528, 685
NmeAIII	GCCGAG	1 cut(s)	544
NsbI	TGCGCA	1 cut(s)	272
NspI	RCATGY	1 cut(s)	271
PaeI	GCATGC	1 cut(s)	271
PasI	CCCWGGG	1 cut(s)	262
PciSI	GCTCTTC	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PdiI	GCCGGC	3 cut(s)	385, 615, 688
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	8 cut(s)	69, 91, 143, 174, 304, 364, 412, 774
Psp6I	CCWGG	2 cut(s)	96, 261
PspFI	CCCAGC	1 cut(s)	453
PspGI	CCWGG	2 cut(s)	96, 261
PspN4I	GGNNCC	5 cut(s)	71, 215, 216, 528, 685
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	7 cut(s)	118, 156, 213, 214, 227, 526, 591
PsrI	GAACNNNNNNTAC	2 cut(s)	341, 373
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	335, 443
RsaNI	GTAC	2 cut(s)	334, 442
SacII	CCGCGG	1 cut(s)	68
SalI	GTCGAC	2 cut(s)	101, 182
SapI	GCTCTTC	1 cut(s)	575
SatI	GCNGC	8 cut(s)	68, 90, 142, 173, 303, 363, 411, 773
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	7 cut(s)	118, 156, 213, 214, 227, 526, 591
ScrFI	CCNGG	7 cut(s)	50, 98, 154, 263, 530, 548, 595
SduI	GDGCHC	3 cut(s)	217, 315, 587
SfaNI	GCATC	1 cut(s)	772
Sfr303I	CCGCGG	1 cut(s)	68
SgrBI	CCGCGG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	526
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	2 cut(s)	40, 391
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	7 cut(s)	48, 96, 152, 261, 528, 546, 593
StyI	CCWWGG	3 cut(s)	246, 587, 786
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	7 cut(s)	102, 162, 183, 294, 309, 324, 711
TasI	AATT	2 cut(s)	40, 391
TatI	WGTACW	2 cut(s)	333, 441
TauI	GCSGC	6 cut(s)	70, 92, 305, 365, 413, 775
TfiI	GAWTC	1 cut(s)	53
TseI	GCWGC	2 cut(s)	141, 172
TspDTI	ATGAA	2 cut(s)	307, 584
TspGWI	ACGGA	1 cut(s)	641
VpaK11BI	GGWCC	1 cut(s)	526
XagI	CCTNNNNNAGG	1 cut(s)	260
XceI	RCATGY	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	102, 183
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.