DNA topoisomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55310 |
| fragaria_vesca | FvH4_4g16730 FvH4_4g16730 |
| malus_domestica | MD00G1109500.v1.1 MD13G1176900.v1.1 MD16G1178600.v1.1 |
| prunus_persica | Prupe.1G146000_v2.0.a1 Prupe.1G146000_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 |
| pyrus_communis | pycom10g21080 pycom13g15260 pycom16g15010 |
| rosa_chinensis | RchiOBHm_Chr4g0420301 |
| rosa_laevigata | RLG00000003998 RLG00000007777 RLG00000007780 |
| rosa_multiflora | Rmu_sc0001767.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00362940 |
| rosa_rugosa | Rorug04G0163000 Rorug04G0163100 Rorug04G0163200 |
| rosa_samantha | Rh4AG224100 Rh4BG227100 Rh4CG238200 |
| rosa_wichuraiana | Rw4G019300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 496 |
| AccB1I | GGYRCC | 1 cut(s) | 1375 |
| AccI | GTMKAC | 2 cut(s) | 140, 701 |
| AciI | CCGC | 2 cut(s) | 1207, 1504 |
| AclWI | GGATC | 6 cut(s) | 66, 1331, 2214, 2267, 2348, 2361 |
| AcoI | YGGCCR | 1 cut(s) | 106 |
| AcsI | RAATTY | 1 cut(s) | 2119 |
| AcuI | CTGAAG | 6 cut(s) | 222, 288, 1123, 1457, 2012, 2347 |
| AfaI | GTAC | 5 cut(s) | 129, 1042, 1498, 1840, 1969 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 231, 1190, 1274, 1395 |
| AhlI | ACTAGT | 2 cut(s) | 746, 1484 |
| AjnI | CCWGG | 4 cut(s) | 1153, 1273, 1813, 2322 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2042, 2074 |
| AleI | CACNNNNGTG | 1 cut(s) | 762 |
| Alw21I | GWGCWC | 2 cut(s) | 759, 1993 |
| Alw26I | GTCTC | 1 cut(s) | 2322 |
| Alw44I | GTGCAC | 2 cut(s) | 755, 1989 |
| AlwI | GGATC | 6 cut(s) | 66, 1331, 2214, 2267, 2348, 2361 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2370 |
| AoxI | GGCC | 9 cut(s) | 106, 419, 432, 464, 664, 1056, 1101, 1816, 2081 |
| ApaLI | GTGCAC | 2 cut(s) | 755, 1989 |
| ApeKI | GCWGC | 2 cut(s) | 1463, 1596 |
| ApoI | RAATTY | 1 cut(s) | 2119 |
| AseI | ATTAAT | 1 cut(s) | 1344 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2306 |
| AspA2I | CCTAGG | 1 cut(s) | 2255 |
| AspS9I | GGNCC | 2 cut(s) | 664, 1101 |
| AsuHPI | GGTGA | 3 cut(s) | 591, 820, 1289 |
| AvrII | CCTAGG | 1 cut(s) | 2255 |
| BaeGI | GKGCMC | 2 cut(s) | 759, 1993 |
| BalI | TGGCCA | 1 cut(s) | 108 |
| BamHI | GGATCC | 1 cut(s) | 2353 |
| BanI | GGYRCC | 1 cut(s) | 1375 |
| Bbv12I | GWGCWC | 2 cut(s) | 759, 1993 |
| BbvCI | CCTCAGC | 1 cut(s) | 454 |
| BbvI | GCAGC | 2 cut(s) | 1450, 1583 |
| BccI | CCATC | 7 cut(s) | 98, 643, 722, 1106, 1277, 1487, 2096 |
| BceAI | ACGGC | 1 cut(s) | 1088 |
| BciT130I | CCWGG | 4 cut(s) | 1155, 1275, 1815, 2324 |
| BciVI | GTATCC | 1 cut(s) | 1768 |
| BcoDI | GTCTC | 1 cut(s) | 2322 |
| BcuI | ACTAGT | 2 cut(s) | 746, 1484 |
| BfaI | CTAG | 7 cut(s) | 747, 1380, 1473, 1485, 2001, 2186, 2256 |
| BfuAI | ACCTGC | 1 cut(s) | 496 |
| BfuI | GTATCC | 1 cut(s) | 1768 |
| BglII | AGATCT | 1 cut(s) | 1897 |
| BisI | GCNGC | 3 cut(s) | 1464, 1505, 1597 |
| BlnI | CCTAGG | 1 cut(s) | 2255 |
| BlsI | GCNGC | 3 cut(s) | 1465, 1506, 1598 |
| Bme1390I | CCNGG | 4 cut(s) | 1155, 1275, 1815, 2324 |
| BmgT120I | GGNCC | 2 cut(s) | 664, 1101 |
| BmiI | GGNNCC | 2 cut(s) | 1377, 2355 |
| BmrFI | CCNGG | 4 cut(s) | 1155, 1275, 1815, 2324 |
| BmrI | ACTGGG | 2 cut(s) | 239, 1746 |
| BmsI | GCATC | 9 cut(s) | 196, 795, 964, 1189, 1237, 1422, 1800, 2043, 2086 |
| BmuI | ACTGGG | 2 cut(s) | 239, 1746 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 437, 469 |
| Bpu10I | CCTNAGC | 1 cut(s) | 454 |
| BpuEI | CTTGAG | 2 cut(s) | 853, 2030 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2352 |
| BsaJI | CCNNGG | 3 cut(s) | 1273, 1657, 2255 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 231, 1190, 1274, 1395 |
| Bse1I | ACTGG | 7 cut(s) | 109, 125, 234, 824, 1007, 1741, 1779 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2352 |
| BseBI | CCWGG | 4 cut(s) | 1155, 1275, 1815, 2324 |
| BseDI | CCNNGG | 3 cut(s) | 1273, 1657, 2255 |
| BseGI | GGATG | 9 cut(s) | 175, 259, 635, 979, 1180, 1269, 1437, 2034, 2353 |
| BseJI | GATNNNNATC | 1 cut(s) | 2352 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 231, 1190, 1274, 1395 |
| BseMII | CTCAG | 3 cut(s) | 435, 468, 1561 |
| BseNI | ACTGG | 7 cut(s) | 109, 125, 234, 824, 1007, 1741, 1779 |
| BseRI | GAGGAG | 2 cut(s) | 863, 1100 |
| BseSI | GKGCMC | 2 cut(s) | 759, 1993 |
| BseXI | GCAGC | 2 cut(s) | 1450, 1583 |
| BsgI | GTGCAG | 2 cut(s) | 914, 1582 |
| BshFI | GGCC | 9 cut(s) | 108, 421, 434, 466, 666, 1058, 1103, 1818, 2083 |
| BshNI | GGYRCC | 1 cut(s) | 1375 |
| BsiHKAI | GWGCWC | 2 cut(s) | 759, 1993 |
| BslFI | GGGAC | 1 cut(s) | 1251 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 231, 1190, 1274, 1395 |
| BsmAI | GTCTC | 1 cut(s) | 2322 |
| BsmFI | GGGAC | 1 cut(s) | 1251 |
| BsmI | GAATGC | 1 cut(s) | 1795 |
| BsnI | GGCC | 9 cut(s) | 108, 421, 434, 466, 666, 1058, 1103, 1818, 2083 |
| Bsp1286I | GDGCHC | 2 cut(s) | 759, 1993 |
| BspACI | CCGC | 2 cut(s) | 1207, 1504 |
| BspANI | GGCC | 9 cut(s) | 108, 421, 434, 466, 666, 1058, 1103, 1818, 2083 |
| BspCNI | CTCAG | 3 cut(s) | 436, 467, 1560 |
| BspLI | GGNNCC | 2 cut(s) | 1377, 2355 |
| BspMI | ACCTGC | 1 cut(s) | 496 |
| BspPI | GGATC | 6 cut(s) | 66, 1331, 2214, 2267, 2348, 2361 |
| BspT107I | GGYRCC | 1 cut(s) | 1375 |
| BsrI | ACTGG | 7 cut(s) | 109, 125, 234, 824, 1007, 1741, 1779 |
| BssECI | CCNNGG | 3 cut(s) | 1273, 1657, 2255 |
| BssT1I | CCWWGG | 2 cut(s) | 1657, 2255 |
| Bst2UI | CCWGG | 4 cut(s) | 1155, 1275, 1815, 2324 |
| Bst4CI | ACNGT | 9 cut(s) | 120, 709, 1312, 1588, 1690, 1728, 2164, 2218, 2266 |
| Bst6I | CTCTTC | 2 cut(s) | 1041, 1077 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 940, 2333 |
| BstC8I | GCNNGC | 2 cut(s) | 1929, 2279 |
| BstDEI | CTNAG | 6 cut(s) | 414, 444, 454, 696, 1500, 1547 |
| BstEII | GGTNACC | 1 cut(s) | 2021 |
| BstF5I | GGATG | 9 cut(s) | 175, 259, 635, 979, 1180, 1269, 1437, 2034, 2353 |
| BstMAI | GTCTC | 1 cut(s) | 2322 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 940, 1204, 1550, 2333 |
| BstNI | CCWGG | 4 cut(s) | 1155, 1275, 1815, 2324 |
| BstNSI | RCATGY | 1 cut(s) | 1931 |
| BstPI | GGTNACC | 1 cut(s) | 2021 |
| BstSCI | CCNGG | 4 cut(s) | 1153, 1273, 1813, 2322 |
| BstSLI | GKGCMC | 2 cut(s) | 759, 1993 |
| BstV1I | GCAGC | 2 cut(s) | 1450, 1583 |
| BstX2I | RGATCY | 3 cut(s) | 1897, 2206, 2353 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1861 |
| BstYI | RGATCY | 3 cut(s) | 1897, 2206, 2353 |
| BsuI | GTATCC | 1 cut(s) | 1768 |
| BsuRI | GGCC | 9 cut(s) | 108, 421, 434, 466, 666, 1058, 1103, 1818, 2083 |
| BtsCI | GGATG | 9 cut(s) | 175, 259, 635, 979, 1180, 1269, 1437, 2034, 2353 |
| BtsI | GCAGTG | 1 cut(s) | 876 |
| BtsIMutI | CAGTG | 4 cut(s) | 876, 2087, 2223, 2262 |
| BveI | ACCTGC | 1 cut(s) | 496 |
| Cac8I | GCNNGC | 2 cut(s) | 1929, 2279 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2370 |
| Cfr13I | GGNCC | 2 cut(s) | 664, 1101 |
| Csp6I | GTAC | 5 cut(s) | 128, 1041, 1497, 1839, 1968 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 276, 311, 2331, 2366 |
| CviAII | CATG | 6 cut(s) | 794, 1301, 1317, 1928, 2271, 2285 |
| CviQI | GTAC | 5 cut(s) | 128, 1041, 1497, 1839, 1968 |
| DdeI | CTNAG | 6 cut(s) | 414, 444, 454, 696, 1500, 1547 |
| DraI | TTTAAA | 2 cut(s) | 67, 1605 |
| EaeI | YGGCCR | 1 cut(s) | 106 |
| Eam1104I | CTCTTC | 2 cut(s) | 1041, 1077 |
| EarI | CTCTTC | 2 cut(s) | 1041, 1077 |
| EciI | GGCGGA | 1 cut(s) | 1222 |
| Eco130I | CCWWGG | 2 cut(s) | 1657, 2255 |
| Eco147I | AGGCCT | 3 cut(s) | 421, 1058, 2083 |
| Eco57I | CTGAAG | 6 cut(s) | 222, 288, 1123, 1457, 2012, 2347 |
| Eco91I | GGTNACC | 1 cut(s) | 2021 |
| EcoO65I | GGTNACC | 1 cut(s) | 2021 |
| EcoRII | CCWGG | 4 cut(s) | 1153, 1273, 1813, 2322 |
| EcoT14I | CCWWGG | 2 cut(s) | 1657, 2255 |
| ErhI | CCWWGG | 2 cut(s) | 1657, 2255 |
| FaeI | CATG | 6 cut(s) | 797, 1304, 1320, 1931, 2274, 2288 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1043, 1075 |
| FaqI | GGGAC | 1 cut(s) | 1251 |
| FatI | CATG | 6 cut(s) | 793, 1300, 1316, 1927, 2270, 2284 |
| FblI | GTMKAC | 2 cut(s) | 140, 701 |
| Fnu4HI | GCNGC | 3 cut(s) | 1464, 1505, 1597 |
| FokI | GGATG | 9 cut(s) | 162, 266, 622, 986, 1167, 1256, 1444, 2021, 2360 |
| Fsp4HI | GCNGC | 3 cut(s) | 1464, 1505, 1597 |
| FspBI | CTAG | 7 cut(s) | 747, 1380, 1473, 1485, 2001, 2186, 2256 |
| GluI | GCNGC | 3 cut(s) | 1464, 1505, 1597 |
| HaeIII | GGCC | 9 cut(s) | 108, 421, 434, 466, 666, 1058, 1103, 1818, 2083 |
| Hin1II | CATG | 6 cut(s) | 797, 1304, 1320, 1931, 2274, 2288 |
| HincII | GTYRAC | 1 cut(s) | 621 |
| HindII | GTYRAC | 1 cut(s) | 621 |
| HindIII | AAGCTT | 1 cut(s) | 672 |
| HpaI | GTTAAC | 1 cut(s) | 621 |
| HphI | GGTGA | 3 cut(s) | 591, 820, 1289 |
| Hpy166II | GTNNAC | 6 cut(s) | 141, 621, 702, 757, 1711, 1991 |
| Hpy8I | GTNNAC | 6 cut(s) | 141, 621, 702, 757, 1711, 1991 |
| Hpy99I | CGWCG | 2 cut(s) | 1109, 1112 |
| HpyCH4III | ACNGT | 9 cut(s) | 120, 709, 1312, 1588, 1690, 1728, 2164, 2218, 2266 |
| HpyCH4IV | ACGT | 2 cut(s) | 1744, 2231 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 940, 1204, 1550, 2333 |
| HpyF3I | CTNAG | 6 cut(s) | 414, 444, 454, 696, 1500, 1547 |
| HpySE526I | ACGT | 2 cut(s) | 1744, 2231 |
| Hsp92II | CATG | 6 cut(s) | 797, 1304, 1320, 1931, 2274, 2288 |
| KspAI | GTTAAC | 1 cut(s) | 621 |
| Lsp1109I | GCAGC | 2 cut(s) | 1450, 1583 |
| LweI | GCATC | 9 cut(s) | 196, 795, 964, 1189, 1237, 1422, 1800, 2043, 2086 |
| MaeI | CTAG | 7 cut(s) | 747, 1380, 1473, 1485, 2001, 2186, 2256 |
| MaeII | ACGT | 2 cut(s) | 1744, 2231 |
| MaeIII | GTNAC | 7 cut(s) | 120, 604, 826, 1225, 1312, 2004, 2021 |
| MfeI | CAATTG | 2 cut(s) | 1626, 2295 |
| MflI | RGATCY | 3 cut(s) | 1897, 2206, 2353 |
| MhlI | GDGCHC | 2 cut(s) | 759, 1993 |
| MlsI | TGGCCA | 1 cut(s) | 108 |
| MluNI | TGGCCA | 1 cut(s) | 108 |
| MlyI | GAGTC | 2 cut(s) | 844, 1975 |
| MmeI | TCCRAC | 4 cut(s) | 99, 1111, 1623, 1752 |
| Mox20I | TGGCCA | 1 cut(s) | 108 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2306 |
| MscI | TGGCCA | 1 cut(s) | 108 |
| MslI | CAYNNNNRTG | 1 cut(s) | 762 |
| Msp20I | TGGCCA | 1 cut(s) | 108 |
| MspR9I | CCNGG | 4 cut(s) | 1155, 1275, 1815, 2324 |
| MunI | CAATTG | 2 cut(s) | 1626, 2295 |
| Mva1269I | GAATGC | 1 cut(s) | 1795 |
| MvaI | CCWGG | 4 cut(s) | 1155, 1275, 1815, 2324 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 940, 1204, 1550, 2333 |
| NlaIII | CATG | 6 cut(s) | 797, 1304, 1320, 1931, 2274, 2288 |
| NlaIV | GGNNCC | 2 cut(s) | 1377, 2355 |
| NmuCI | GTSAC | 2 cut(s) | 604, 826 |
| NspI | RCATGY | 1 cut(s) | 1931 |
| OliI | CACNNNNGTG | 1 cut(s) | 762 |
| PaeI | GCATGC | 1 cut(s) | 1931 |
| PceI | AGGCCT | 3 cut(s) | 421, 1058, 2083 |
| PctI | GAATGC | 1 cut(s) | 1795 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2306 |
| PfeI | GAWTC | 9 cut(s) | 28, 197, 248, 323, 479, 1210, 1667, 1702, 2367 |
| PkrI | GCNGC | 3 cut(s) | 1465, 1506, 1598 |
| PleI | GAGTC | 2 cut(s) | 843, 1975 |
| PpsI | GAGTC | 2 cut(s) | 843, 1975 |
| PshBI | ATTAAT | 1 cut(s) | 1344 |
| Psp6I | CCWGG | 4 cut(s) | 1153, 1273, 1813, 2322 |
| PspEI | GGTNACC | 1 cut(s) | 2021 |
| PspGI | CCWGG | 4 cut(s) | 1153, 1273, 1813, 2322 |
| PspN4I | GGNNCC | 2 cut(s) | 1377, 2355 |
| PspPI | GGNCC | 2 cut(s) | 664, 1101 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2370 |
| PsuI | RGATCY | 3 cut(s) | 1897, 2206, 2353 |
| RsaI | GTAC | 5 cut(s) | 129, 1042, 1498, 1840, 1969 |
| RsaNI | GTAC | 5 cut(s) | 128, 1041, 1497, 1839, 1968 |
| RseI | CAYNNNNRTG | 1 cut(s) | 762 |
| SatI | GCNGC | 3 cut(s) | 1464, 1505, 1597 |
| Sau96I | GGNCC | 2 cut(s) | 664, 1101 |
| SchI | GAGTC | 2 cut(s) | 844, 1975 |
| ScrFI | CCNGG | 4 cut(s) | 1155, 1275, 1815, 2324 |
| SduI | GDGCHC | 2 cut(s) | 759, 1993 |
| SfaNI | GCATC | 9 cut(s) | 196, 795, 964, 1189, 1237, 1422, 1800, 2043, 2086 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 762 |
| SmlI | CTYRAG | 2 cut(s) | 832, 2009 |
| SmoI | CTYRAG | 2 cut(s) | 832, 2009 |
| SpeI | ACTAGT | 2 cut(s) | 746, 1484 |
| SphI | GCATGC | 1 cut(s) | 1931 |
| SseBI | AGGCCT | 3 cut(s) | 421, 1058, 2083 |
| SsiI | CCGC | 2 cut(s) | 1207, 1504 |
| SspI | AATATT | 1 cut(s) | 439 |
| SspMI | CTAG | 7 cut(s) | 747, 1380, 1473, 1485, 2001, 2186, 2256 |
| StuI | AGGCCT | 3 cut(s) | 421, 1058, 2083 |
| StyD4I | CCNGG | 4 cut(s) | 1153, 1273, 1813, 2322 |
| StyI | CCWWGG | 2 cut(s) | 1657, 2255 |
| TaaI | ACNGT | 9 cut(s) | 120, 709, 1312, 1588, 1690, 1728, 2164, 2218, 2266 |
| TaiI | ACGT | 2 cut(s) | 1747, 2234 |
| TaqI | TCGA | 2 cut(s) | 641, 1110 |
| TatI | WGTACW | 1 cut(s) | 127 |
| TauI | GCSGC | 1 cut(s) | 1507 |
| TfiI | GAWTC | 9 cut(s) | 28, 197, 248, 323, 479, 1210, 1667, 1702, 2367 |
| TscAI | CASTG | 4 cut(s) | 876, 2094, 2223, 2269 |
| TseFI | GTSAC | 2 cut(s) | 604, 826 |
| TseI | GCWGC | 2 cut(s) | 1463, 1596 |
| Tsp45I | GTSAC | 2 cut(s) | 604, 826 |
| TspDTI | ATGAA | 6 cut(s) | 541, 890, 1029, 1590, 1695, 2301 |
| TspGWI | ACGGA | 2 cut(s) | 1058, 1826 |
| TspRI | CASTG | 4 cut(s) | 876, 2094, 2223, 2269 |
| VneI | GTGCAC | 2 cut(s) | 755, 1989 |
| VspI | ATTAAT | 1 cut(s) | 1344 |
| XapI | RAATTY | 1 cut(s) | 2119 |
| XceI | RCATGY | 1 cut(s) | 1931 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 999 |
| XmaJI | CCTAGG | 1 cut(s) | 2255 |
| XmiI | GTMKAC | 2 cut(s) | 140, 701 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2306 |
| XspI | CTAG | 7 cut(s) | 747, 1380, 1473, 1485, 2001, 2186, 2256 |