Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005383

Physical Location & Seq

Genomic Coordinates Forward (+)

28392821 .. 28396829

Gene Structure 4009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0163000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2739 bp

ATGATAGCACAGACAAAGGTATCCCTTGATAGAATTGCATCATTCCTTTCTCTTGATGAGTTGAAGCCTGATGTTATAGAGAAACTTCCTAGAGGTAGTTCTGATACTGCAATTGAAATATTAGATGCAAATTTCTTATGGGAATTGTCTTCGCCTAACCCAACATTGAAGGATATAAATCTGAAAGTTAGCCATGGTATGAAGGTTGCTGTTTGTGGTACTGTTGGTTCAGGCAAATCAAGCTTACTTTCTTGTATTCTGGGAGAAGTTCCCAAGATATCTGGAACTCTTAAGTTGTGTGGGACAAAGGCTTATGTTTCTCAGTCACCATGGATACAGAGTGGTAAGATAGAAGAAAACATATTGTTTGGTAAAGAGATGGACAGAGAAAGGTATGAGGGAGTTCTTGAAGCATGTTCGTTGAAGAAGGACCTGGAAATTCTATCATTTGGTGATCAGACGGTTATAGGGGAAAGGGGGATCAATCTAAGTGGAGGTCAGAAGCAAAGAATACAAATTGCACGAGCTTTGTACCAAGATGCTGATATCTATCTGTTTGATGATCCTTTTAGTGCTGTTGATGCTCATACAGGATCTCACCTTTACAAGGAATGCTTGATGGGCTTCTTGAGTTCCAAAACAGTAATCTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGATATTGTCTTGGTCATGAAAGACGGAAAGATCACTCAAGCTGGAAAGTTCAATGACATTCTTAATTCAGGAACTGATTTTATGGATCTTGTGGGAGCACACAATGAAGCTTTGTCTGCGCTTGATTCTGTTGGGGTAGGGCCGGTTGAAAAAACAAGCATCAGTAAAGAAGATAACAATTCGGCTATTACTACTGAGGCTGTCCAAAAATTAGACAACAGAGATGTTGAGTATTGCAAAATAGATGATTTAGGTGTGCCAAAAGGGCAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGTAAGGTTGGGTTTTCAGTGTACTGGAAATACATTACCACAGCGTATGGAGGAACTCTCGTGCCTTTTATATTACTTGCACAGATTCTCTTTCAACTCCTTCAAATTGGAAGCAATTACTGGATGGCTTGGTCAACTCCTGTGTCAGCAGATGTGAAACCAACTGTTACAAGCTCGACGCTTATAATTGTCTATGTGGCTTTGGCAATTGGAAGTTCTTTTTGTGTCCTTTTCAGAGCTCTGCTTCTTGCAACGGCTAAGTACGAGACAGCCACTATACTCTTCAATAAAATGCACTTGTGCATATTCCGTGCTCCCATGTCATTCTTCGATGCCACTCCAAGTGGACGAATCTTAAACAGAGCTTCTACAGACCAAAATGCAGTGGACATGAACATTTCAAATGAAATTGGGGCCTTTGCCTTCTCAATGATACAGCTTTTAGGAATTATTGCAGTGATGTCTCAGGTGGCATGGCAGGTTTTCATCATATTTATACCTGTGATTACAGCCTGTGTTTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTAGCAAGATTAATTGGAGTATGCAAAGCTCCTGTGATACAACATTTTGCCGAAACAATTTCAGGGTCAACTACTATTAGAAGCTTCGATCAAGAATCTAGATTCCGAGATACCAACATGAAACTGACGGATGGATATGGTCGGCCAAAGTTGTACATTTCTGGTGCAATGGAATGGCTGTGCTTTCGCTTGGATGTGTTGTCATCCATTACATTTGCATTCTTTTTAGTATTCTTGATCTCTGTTCCAGAAGGAGTGATAGATCCAGGCATTGCGGGCTTAGCCGTCACATATGGACTTAACCTAAACATGTTACAAGTTTGGGTTATATGGAATCTTTGCAGTATGGAAAACAAGATAATATCTGTGGAGAGAATACTACAGTATACTAGTATACCAAGTGAACCTCCTCTGGTAATAGATTCCAACAGACCTGATCATTCCTGGCCATCGCAAGGAAAAGTTGATATGCATGATCTTCAGGTGCGGTATGCTCCACACCTGCCACTTGTGTTGCGGGGTCTCACATGTTCCTTCCCTGGAGGAATGAAAACTGGGATTGTGGGGAGAACTGGCAGTGGAAAGTCAACTCTCATACAAACTCTTTTTCGAATTGTCGATCCTGCTGCTGGCCGGATTTTGATAGATGGCATCGATATCTCTTCTATTGGATTGCATGATCTGCGGTCTAGGCTAAGCATTATCCCTCAGGACCCAACCATGTTTGAAGGAACTGTAAGAAGCAATCTGGACCCACTTGAAGAGTATACAGATGAACAAATTTGGGAGGCCCTGGATAAATGCCAACTTGGAGATGAAGTTGGGAAGAAACAAGGGAAGCTTGATTCTGCAGTTAGTGAAAATGGAGAGAACTGGAGTATGGGTCAGAGGCAGCTGGTTTGCCTGGGCCGTGTGCTCCTCAAGAAAAGTAAAGTCCTGGTGCTTGATGAAGCTACTGCATCTGTTGATACTGCTACAGATACTTTGATTCAGCAGACCCTTTGGCATCACTTTTCAGACTGTACGGTCATTACTATTGCGCATCGAATAACTTCTGTTCTTGACAGTGACATGGTTCTACTTCTAAGTCATGGGCTTATTGAGGAATGTGATTCTCCTGCAAGATTGCTAGAAAACAAGTCATCATCTTTTGCCCAACTTGTAGCAGAGTACACAATGAGATCGAATTCCACATTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

912

Amino Acids

100.61

Weight (kDa)

5.28

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	56 - 190	1.8e-20	ABC transporter
ABC_membrane	PF00664	350 - 592	7.4e-26	ABC transporter transmembrane region
ABC_tran	PF00005	684 - 832	6.6e-28	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55310
fragaria_vesca	FvH4_4g16730 FvH4_4g16730
malus_domestica	MD00G1109500.v1.1 MD13G1176900.v1.1 MD16G1178600.v1.1
prunus_persica	Prupe.1G146000_v2.0.a1 Prupe.1G146000_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1
pyrus_communis	pycom10g21080 pycom13g15260 pycom16g15010
rosa_chinensis	RchiOBHm_Chr4g0420301
rosa_laevigata	RLG00000003998 RLG00000007777 RLG00000007780
rosa_multiflora	Rmu_sc0001767.1_g000005
rosa_roxburghii	Rroxscaffold_5G00362940
rosa_rugosa	Rorug04G0163000 Rorug04G0163100 Rorug04G0163200
rosa_samantha	Rh4AG224100 Rh4BG227100 Rh4CG238200
rosa_wichuraiana	Rw4G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1166
AarI	CACCTGC	1 cut(s)	2046
AasI	GACNNNNNNGTC	1 cut(s)	2561
Acc16I	TGCGCA	1 cut(s)	2577
Acc36I	ACCTGC	3 cut(s)	685, 1450, 2046
AccI	GTMKAC	3 cut(s)	1922, 1930, 2303
AciI	CCGC	4 cut(s)	1811, 2023, 2053, 2221
AclWI	GGATC	6 cut(s)	488, 557, 601, 777, 1793, 2150
AcoI	YGGCCR	3 cut(s)	1679, 1982, 2167
AcsI	RAATTY	4 cut(s)	130, 438, 2316, 2722
AcuI	CTGAAG	2 cut(s)	1509, 2000
AfaI	GTAC	7 cut(s)	220, 533, 1004, 1244, 1691, 2560, 2708
AfiI	CCNNNNNNNGG	4 cut(s)	607, 1500, 1991, 2165
AflII	CTTAAG	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	1845, 2063
AhlI	ACTAGT	1 cut(s)	1925
AjnI	CCWGG	7 cut(s)	432, 1801, 1979, 2074, 2328, 2439, 2472
Alw21I	GWGCWC	4 cut(s)	784, 1222, 1297, 2454
Alw26I	GTCTC	3 cut(s)	1241, 1449, 2063
AlwI	GGATC	6 cut(s)	488, 557, 601, 777, 1793, 2150
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	7 cut(s)	824, 1395, 1679, 1982, 2167, 2325, 2443
ApeKI	GCWGC	4 cut(s)	680, 952, 2162, 2428
ApoI	RAATTY	4 cut(s)	130, 438, 2316, 2722
AseI	ATTAAT	1 cut(s)	1547
Asp700I	GAANNNNTTC	1 cut(s)	2587
AspLEI	GCGC	2 cut(s)	805, 2578
AspS9I	GGNCC	7 cut(s)	430, 824, 1395, 2248, 2287, 2326, 2443
AsuHPI	GGTGA	3 cut(s)	318, 464, 590
AsuII	TTCGAA	1 cut(s)	2146
AvaII	GGWCC	3 cut(s)	430, 2248, 2287
AxyI	CCTNAGG	1 cut(s)	2244
BaeI	ACNNNNGTAYC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	1984
BanII	GRGCYC	1 cut(s)	1222
BauI	CACGAG	3 cut(s)	522, 1040, 1530
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	4 cut(s)	784, 1222, 1297, 2454
BbvI	GCAGC	4 cut(s)	667, 964, 2149, 2440
BccI	CCATC	6 cut(s)	373, 613, 1099, 1661, 1993, 2177
BceAI	ACGGC	3 cut(s)	1251, 1805, 2430
BcgI	CGANNNNNNTGC	2 cut(s)	2144, 2178
BciT130I	CCWGG	7 cut(s)	434, 1803, 1981, 2076, 2330, 2441, 2474
BciVI	GTATCC	2 cut(s)	31, 327
BclI	TGATCA	2 cut(s)	454, 1972
BcoDI	GTCTC	3 cut(s)	1241, 1449, 2063
BcuI	ACTAGT	1 cut(s)	1925
BfaI	CTAG	6 cut(s)	90, 1538, 1635, 1926, 2226, 2666
BfmI	CTRYAG	4 cut(s)	1350, 1916, 2385, 2511
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	3 cut(s)	685, 1450, 2046
BfuI	GTATCC	2 cut(s)	31, 327
BglI	GCCNNNNNGGC	1 cut(s)	949
BisI	GCNGC	4 cut(s)	681, 953, 2163, 2429
BlpI	GCTNAGC	2 cut(s)	1816, 2231
BlsI	GCNGC	4 cut(s)	682, 954, 2164, 2430
Bme1390I	CCNGG	7 cut(s)	434, 1803, 1981, 2076, 2330, 2441, 2474
Bme18I	GGWCC	3 cut(s)	430, 2248, 2287
BmgT120I	GGNCC	7 cut(s)	430, 824, 1395, 2248, 2287, 2326, 2443
BmiI	GGNNCC	3 cut(s)	1396, 2250, 2289
BmrFI	CCNGG	7 cut(s)	434, 1803, 1981, 2076, 2330, 2441, 2474
BmrI	ACTGGG	1 cut(s)	2100
BmuI	ACTGGG	1 cut(s)	2100
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	1023, 1055
BpmI	CTGGAG	2 cut(s)	2097, 2431
Bpu1102I	GCTNAGC	2 cut(s)	1816, 2231
Bpu14I	TTCGAA	1 cut(s)	2146
BpuEI	CTTGAG	3 cut(s)	649, 705, 2441
Bsa29I	ATCGAT	1 cut(s)	2190
BsaBI	GATNNNNATC	2 cut(s)	177, 549
BsaI	GGTCTC	1 cut(s)	2063
BsaJI	CCNNGG	5 cut(s)	193, 329, 2074, 2328, 2440
BsaXI	ACNNNNNCTCC	4 cut(s)	2340, 2370, 2404, 2434
Bsc4I	CCNNNNNNNGG	4 cut(s)	607, 1500, 1991, 2165
Bse118I	RCCGGY	1 cut(s)	826
Bse1I	ACTGG	5 cut(s)	1010, 1106, 2095, 2113, 2414
Bse21I	CCTNAGG	1 cut(s)	2244
Bse3DI	GCAATG	2 cut(s)	1710, 1806
Bse8I	GATNNNNATC	2 cut(s)	177, 549
BseBI	CCWGG	7 cut(s)	434, 1803, 1981, 2076, 2330, 2441, 2474
BseCI	ATCGAT	1 cut(s)	2190
BseDI	CCNNGG	5 cut(s)	193, 329, 2074, 2328, 2440
BseGI	GGATG	4 cut(s)	1110, 1672, 1735, 1739
BseJI	GATNNNNATC	2 cut(s)	177, 549
BseLI	CCNNNNNNNGG	4 cut(s)	607, 1500, 1991, 2165
BseMI	GCAATG	2 cut(s)	1710, 1806
BseMII	CTCAG	4 cut(s)	335, 870, 1460, 2258
BseNI	ACTGG	5 cut(s)	1010, 1106, 2095, 2113, 2414
BseRI	GAGGAG	2 cut(s)	1935, 2444
BseXI	GCAGC	4 cut(s)	667, 964, 2149, 2440
BshFI	GGCC	7 cut(s)	826, 1397, 1681, 1984, 2169, 2327, 2445
BshVI	ATCGAT	1 cut(s)	2190
BsiHKAI	GWGCWC	4 cut(s)	784, 1222, 1297, 2454
BsiSI	CCGG	2 cut(s)	827, 2170
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	4 cut(s)	607, 1500, 1991, 2165
BsmAI	GTCTC	3 cut(s)	1241, 1449, 2063
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	2 cut(s)	617, 1754
BsnI	GGCC	7 cut(s)	826, 1397, 1681, 1984, 2169, 2327, 2445
Bso31I	GGTCTC	1 cut(s)	2063
Bsp119I	TTCGAA	1 cut(s)	2146
Bsp1286I	GDGCHC	4 cut(s)	784, 1222, 1297, 2454
Bsp1407I	TGTACA	1 cut(s)	1689
Bsp1720I	GCTNAGC	2 cut(s)	1816, 2231
Bsp19I	CCATGG	2 cut(s)	193, 329
BspACI	CCGC	4 cut(s)	1811, 2023, 2053, 2221
BspANI	GGCC	7 cut(s)	826, 1397, 1681, 1984, 2169, 2327, 2445
BspCNI	CTCAG	4 cut(s)	334, 871, 1459, 2257
BspDI	ATCGAT	1 cut(s)	2190
BspHI	TCATGA	1 cut(s)	699
BspLI	GGNNCC	3 cut(s)	1396, 2250, 2289
BspMAI	CTGCAG	1 cut(s)	2389
BspMI	ACCTGC	3 cut(s)	685, 1450, 2046
BspPI	GGATC	6 cut(s)	488, 557, 601, 777, 1793, 2150
BspT104I	TTCGAA	1 cut(s)	2146
BspTI	CTTAAG	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	2063
BsrDI	GCAATG	2 cut(s)	1710, 1806
BsrFI	RCCGGY	1 cut(s)	826
BsrGI	TGTACA	1 cut(s)	1689
BsrI	ACTGG	5 cut(s)	1010, 1106, 2095, 2113, 2414
BssAI	RCCGGY	1 cut(s)	826
BssECI	CCNNGG	5 cut(s)	193, 329, 2074, 2328, 2440
BssNAI	GTATAC	3 cut(s)	1923, 1931, 2304
BssSI	CACGAG	3 cut(s)	522, 1040, 1530
BssT1I	CCWWGG	2 cut(s)	193, 329
Bst1107I	GTATAC	3 cut(s)	1923, 1931, 2304
Bst2BI	CACGAG	3 cut(s)	522, 1040, 1530
Bst2UI	CCWGG	7 cut(s)	434, 1803, 1981, 2076, 2330, 2441, 2474
Bst4CI	ACNGT	9 cut(s)	223, 463, 643, 1147, 1920, 2272, 2558, 2563, 2603
Bst6I	CTCTTC	4 cut(s)	963, 1268, 2203, 2292
BstAFI	CTTAAG	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	2218
BstAUI	TGTACA	1 cut(s)	1689
BstBI	TTCGAA	1 cut(s)	2146
BstC8I	GCNNGC	2 cut(s)	1813, 2167
BstDEI	CTNAG	9 cut(s)	321, 488, 879, 1239, 1446, 1816, 2231, 2244, 2621
BstDSI	CCRYGG	2 cut(s)	193, 329
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	4 cut(s)	1110, 1672, 1735, 1739
BstHHI	GCGC	2 cut(s)	805, 2578
BstMAI	GTCTC	3 cut(s)	1241, 1449, 2063
BstMWI	GCNNNNNNNGC	9 cut(s)	240, 581, 621, 800, 949, 1812, 1817, 2218, 2227
BstNI	CCWGG	7 cut(s)	434, 1803, 1981, 2076, 2330, 2441, 2474
BstNSI	RCATGY	3 cut(s)	417, 1849, 2067
BstSCI	CCNGG	7 cut(s)	432, 1801, 1979, 2074, 2328, 2439, 2472
BstSFI	CTRYAG	4 cut(s)	1350, 1916, 2385, 2511
BstV1I	GCAGC	4 cut(s)	667, 964, 2149, 2440
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	3 cut(s)	593, 769, 1798
BstYI	RGATCY	3 cut(s)	593, 769, 1798
BstZ17I	GTATAC	3 cut(s)	1923, 1931, 2304
Bsu15I	ATCGAT	1 cut(s)	2190
Bsu36I	CCTNAGG	1 cut(s)	2244
BsuI	GTATCC	2 cut(s)	31, 327
BsuRI	GGCC	7 cut(s)	826, 1397, 1681, 1984, 2169, 2327, 2445
BsuTUI	ATCGAT	1 cut(s)	2190
BtgI	CCRYGG	2 cut(s)	193, 329
BtgZI	GCGATG	1 cut(s)	1971
BtsCI	GGATG	4 cut(s)	1110, 1672, 1735, 1739
BtsI	GCAGTG	3 cut(s)	1371, 1443, 2119
BtsIMutI	CAGTG	5 cut(s)	1005, 1371, 1443, 2119, 2608
BveI	ACCTGC	3 cut(s)	685, 1450, 2046
Cac8I	GCNNGC	2 cut(s)	1813, 2167
CaiI	CAGNNNCTG	1 cut(s)	758
CciI	TCATGA	1 cut(s)	699
CfoI	GCGC	2 cut(s)	805, 2578
Cfr10I	RCCGGY	1 cut(s)	826
Cfr13I	GGNCC	7 cut(s)	430, 824, 1395, 2248, 2287, 2326, 2443
ClaI	ATCGAT	1 cut(s)	2190
CseI	GACGC	1 cut(s)	1168
Csp6I	GTAC	7 cut(s)	219, 532, 1003, 1243, 1690, 2559, 2707
CspCI	CAANNNNNGTGG	4 cut(s)	472, 507, 2031, 2066
CviQI	GTAC	7 cut(s)	219, 532, 1003, 1243, 1690, 2559, 2707
DdeI	CTNAG	9 cut(s)	321, 488, 879, 1239, 1446, 1816, 2231, 2244, 2621
DrdI	GACNNNNNNGTC	1 cut(s)	2561
DseDI	GACNNNNNNGTC	1 cut(s)	2561
EaeI	YGGCCR	3 cut(s)	1679, 1982, 2167
Eam1104I	CTCTTC	4 cut(s)	963, 1268, 2203, 2292
EarI	CTCTTC	4 cut(s)	963, 1268, 2203, 2292
Ecl136II	GAGCTC	1 cut(s)	1220
Eco130I	CCWWGG	2 cut(s)	193, 329
Eco24I	GRGCYC	1 cut(s)	1222
Eco31I	GGTCTC	1 cut(s)	2063
Eco32I	GATATC	3 cut(s)	279, 547, 2194
Eco47I	GGWCC	3 cut(s)	430, 2248, 2287
Eco53kI	GAGCTC	1 cut(s)	1220
Eco57I	CTGAAG	2 cut(s)	1509, 2000
Eco81I	CCTNAGG	1 cut(s)	2244
EcoICRI	GAGCTC	1 cut(s)	1220
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoO109I	RGGNCCY	4 cut(s)	430, 1395, 2248, 2326
EcoRI	GAATTC	1 cut(s)	2722
EcoRII	CCWGG	7 cut(s)	432, 1801, 1979, 2074, 2328, 2439, 2472
EcoRV	GATATC	3 cut(s)	279, 547, 2194
EcoT14I	CCWWGG	2 cut(s)	193, 329
EcoT22I	ATGCAT	1 cut(s)	2010
EcoT38I	GRGCYC	1 cut(s)	1222
ErhI	CCWWGG	2 cut(s)	193, 329
FalI	AAGNNNNNCTT	6 cut(s)	599, 631, 939, 971, 2361, 2393
FaqI	GGGAC	1 cut(s)	316
FauI	CCCGC	2 cut(s)	1804, 2046
FauNDI	CATATG	1 cut(s)	1828
FbaI	TGATCA	2 cut(s)	454, 1972
FblI	GTMKAC	3 cut(s)	1922, 1930, 2303
Fnu4HI	GCNGC	4 cut(s)	681, 953, 2163, 2429
FokI	GGATG	4 cut(s)	1117, 1679, 1726, 1742
FriOI	GRGCYC	1 cut(s)	1222
Fsp4HI	GCNGC	4 cut(s)	681, 953, 2163, 2429
FspBI	CTAG	6 cut(s)	90, 1538, 1635, 1926, 2226, 2666
FspI	TGCGCA	1 cut(s)	2577
GlaI	GCGC	2 cut(s)	804, 2577
GluI	GCNGC	4 cut(s)	681, 953, 2163, 2429
GsuI	CTGGAG	2 cut(s)	2097, 2431
HaeIII	GGCC	7 cut(s)	826, 1397, 1681, 1984, 2169, 2327, 2445
HapII	CCGG	2 cut(s)	827, 2170
HgaI	GACGC	1 cut(s)	1168
HhaI	GCGC	2 cut(s)	805, 2578
Hin6I	GCGC	2 cut(s)	803, 2576
HinP1I	GCGC	2 cut(s)	803, 2576
HincII	GTYRAC	3 cut(s)	1116, 1605, 2124
HindII	GTYRAC	3 cut(s)	1116, 1605, 2124
HindIII	AAGCTT	4 cut(s)	241, 792, 1618, 2375
HpaII	CCGG	2 cut(s)	827, 2170
HphI	GGTGA	3 cut(s)	318, 464, 590
Hpy188I	TCNGA	8 cut(s)	103, 183, 459, 501, 1217, 1643, 2424, 2554
Hpy99I	CGWCG	1 cut(s)	1162
HpyAV	CCTTC	9 cut(s)	163, 196, 421, 1091, 1414, 1533, 1781, 2080, 2258
HpyCH4III	ACNGT	9 cut(s)	223, 463, 643, 1147, 1920, 2272, 2558, 2563, 2603
HpyF10VI	GCNNNNNNNGC	9 cut(s)	240, 581, 621, 800, 949, 1812, 1817, 2218, 2227
HpyF3I	CTNAG	9 cut(s)	321, 488, 879, 1239, 1446, 1816, 2231, 2244, 2621
HspAI	GCGC	2 cut(s)	803, 2576
Ksp22I	TGATCA	2 cut(s)	454, 1972
LmnI	GCTCC	5 cut(s)	779, 1300, 1570, 2035, 2457
Lsp1109I	GCAGC	4 cut(s)	667, 964, 2149, 2440
MaeI	CTAG	6 cut(s)	90, 1538, 1635, 1926, 2226, 2666
MaeIII	GTNAC	6 cut(s)	324, 652, 1147, 1822, 1848, 2603
MfeI	CAATTG	2 cut(s)	111, 1188
MflI	RGATCY	3 cut(s)	593, 769, 1798
MhlI	GDGCHC	4 cut(s)	784, 1222, 1297, 2454
MlsI	TGGCCA	1 cut(s)	1984
MluNI	TGGCCA	1 cut(s)	1984
MmeI	TCCRAC	1 cut(s)	1986
Mox20I	TGGCCA	1 cut(s)	1984
Mph1103I	ATGCAT	1 cut(s)	2010
MroXI	GAANNNNTTC	1 cut(s)	2587
MscI	TGGCCA	1 cut(s)	1984
MseI	TTAA	5 cut(s)	291, 747, 1337, 1547, 1836
Msp20I	TGGCCA	1 cut(s)	1984
MspA1I	CMGCKG	1 cut(s)	2431
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	2 cut(s)	827, 2170
MspR9I	CCNGG	7 cut(s)	434, 1803, 1981, 2076, 2330, 2441, 2474
MunI	CAATTG	2 cut(s)	111, 1188
Mva1269I	GAATGC	2 cut(s)	617, 1754
MvaI	CCWGG	7 cut(s)	434, 1803, 1981, 2076, 2330, 2441, 2474
MwoI	GCNNNNNNNGC	9 cut(s)	240, 581, 621, 800, 949, 1812, 1817, 2218, 2227
NcoI	CCATGG	2 cut(s)	193, 329
NdeI	CATATG	1 cut(s)	1828
NlaIV	GGNNCC	3 cut(s)	1396, 2250, 2289
NmuCI	GTSAC	4 cut(s)	324, 652, 1822, 2603
NsbI	TGCGCA	1 cut(s)	2577
NsiI	ATGCAT	1 cut(s)	2010
NspI	RCATGY	3 cut(s)	417, 1849, 2067
NspV	TTCGAA	1 cut(s)	2146
PagI	TCATGA	1 cut(s)	699
PaqCI	CACCTGC	1 cut(s)	2046
PciI	ACATGT	2 cut(s)	1845, 2063
PctI	GAATGC	2 cut(s)	617, 1754
PdmI	GAANNNNTTC	1 cut(s)	2587
PkrI	GCNGC	4 cut(s)	682, 954, 2164, 2430
PpuMI	RGGWCCY	2 cut(s)	430, 2248
PscI	ACATGT	2 cut(s)	1845, 2063
PshBI	ATTAAT	1 cut(s)	1547
PsiI	TTATAA	1 cut(s)	1166
Psp124BI	GAGCTC	1 cut(s)	1222
Psp5II	RGGWCCY	2 cut(s)	430, 2248
Psp6I	CCWGG	7 cut(s)	432, 1801, 1979, 2074, 2328, 2439, 2472
PspGI	CCWGG	7 cut(s)	432, 1801, 1979, 2074, 2328, 2439, 2472
PspN4I	GGNNCC	3 cut(s)	1396, 2250, 2289
PspPI	GGNCC	7 cut(s)	430, 824, 1395, 2248, 2287, 2326, 2443
PspPPI	RGGWCCY	2 cut(s)	430, 2248
PsrI	GAACNNNNNNTAC	2 cut(s)	211, 243
PstI	CTGCAG	1 cut(s)	2389
PstNI	CAGNNNCTG	1 cut(s)	758
PsuI	RGATCY	3 cut(s)	593, 769, 1798
PvuII	CAGCTG	1 cut(s)	2431
RsaI	GTAC	7 cut(s)	220, 533, 1004, 1244, 1691, 2560, 2708
RsaNI	GTAC	7 cut(s)	219, 532, 1003, 1243, 1690, 2559, 2707
SacI	GAGCTC	1 cut(s)	1222
SaqAI	TTAA	5 cut(s)	291, 747, 1337, 1547, 1836
SatI	GCNGC	4 cut(s)	681, 953, 2163, 2429
Sau96I	GGNCC	7 cut(s)	430, 824, 1395, 2248, 2287, 2326, 2443
ScrFI	CCNGG	7 cut(s)	434, 1803, 1981, 2076, 2330, 2441, 2474
SduI	GDGCHC	4 cut(s)	784, 1222, 1297, 2454
SfcI	CTRYAG	4 cut(s)	1350, 1916, 2385, 2511
SfuI	TTCGAA	1 cut(s)	2146
SinI	GGWCC	3 cut(s)	430, 2248, 2287
SmlI	CTYRAG	4 cut(s)	290, 628, 720, 2456
SmoI	CTYRAG	4 cut(s)	290, 628, 720, 2456
SpeI	ACTAGT	1 cut(s)	1925
SsiI	CCGC	4 cut(s)	1811, 2023, 2053, 2221
SspI	AATATT	2 cut(s)	120, 1514
SspMI	CTAG	6 cut(s)	90, 1538, 1635, 1926, 2226, 2666
SstI	GAGCTC	1 cut(s)	1222
StyD4I	CCNGG	7 cut(s)	432, 1801, 1979, 2074, 2328, 2439, 2472
StyI	CCWWGG	2 cut(s)	193, 329
TaaI	ACNGT	9 cut(s)	223, 463, 643, 1147, 1920, 2272, 2558, 2563, 2603
TaqI	TCGA	8 cut(s)	1157, 1311, 1623, 2146, 2154, 2190, 2581, 2720
TatI	WGTACW	3 cut(s)	1002, 1689, 2706
Tru1I	TTAA	5 cut(s)	291, 747, 1337, 1547, 1836
Tru9I	TTAA	5 cut(s)	291, 747, 1337, 1547, 1836
TscAI	CASTG	5 cut(s)	1005, 1371, 1443, 2119, 2608
TseFI	GTSAC	4 cut(s)	324, 652, 1822, 2603
TseI	GCWGC	4 cut(s)	680, 952, 2162, 2428
Tsp45I	GTSAC	4 cut(s)	324, 652, 1822, 2603
TspGWI	ACGGA	3 cut(s)	723, 1280, 1679
TspRI	CASTG	5 cut(s)	1005, 1371, 1443, 2119, 2608
Vha464I	CTTAAG	1 cut(s)	290
VpaK11BI	GGWCC	3 cut(s)	430, 2248, 2287
VspI	ATTAAT	1 cut(s)	1547
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	4 cut(s)	130, 438, 2316, 2722
XbaI	TCTAGA	1 cut(s)	1634
XceI	RCATGY	3 cut(s)	417, 1849, 2067
XmiI	GTMKAC	3 cut(s)	1922, 1930, 2303
XmnI	GAANNNNTTC	1 cut(s)	2587
XspI	CTAG	6 cut(s)	90, 1538, 1635, 1926, 2226, 2666
Zsp2I	ATGCAT	1 cut(s)	2010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.