DNA topoisomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G55310 |
| fragaria_vesca | FvH4_4g16730 FvH4_4g16730 |
| malus_domestica | MD00G1109500.v1.1 MD13G1176900.v1.1 MD16G1178600.v1.1 |
| prunus_persica | Prupe.1G146000_v2.0.a1 Prupe.1G146000_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 |
| pyrus_communis | pycom10g21080 pycom13g15260 pycom16g15010 |
| rosa_chinensis | RchiOBHm_Chr4g0420301 |
| rosa_laevigata | RLG00000003998 RLG00000007777 RLG00000007780 |
| rosa_multiflora | Rmu_sc0001767.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00362940 |
| rosa_rugosa | Rorug04G0163000 Rorug04G0163100 Rorug04G0163200 |
| rosa_samantha | Rh4AG224100 Rh4BG227100 Rh4CG238200 |
| rosa_wichuraiana | Rw4G019300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1144 |
| Acc36I | ACCTGC | 3 cut(s) | 338, 1144, 2353 |
| Acc65I | GGTACC | 1 cut(s) | 248 |
| AccB1I | GGYRCC | 1 cut(s) | 248 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1121 |
| AccI | GTMKAC | 1 cut(s) | 566 |
| AciI | CCGC | 4 cut(s) | 259, 324, 1849, 2146 |
| AclWI | GGATC | 5 cut(s) | 170, 1291, 1973, 2888, 2990 |
| AcoI | YGGCCR | 1 cut(s) | 1161 |
| AcsI | RAATTY | 3 cut(s) | 240, 856, 2761 |
| AcuI | CTGAAG | 5 cut(s) | 840, 1765, 1862, 2654, 2989 |
| AcvI | CACGTG | 1 cut(s) | 72 |
| AcyI | GRCGYC | 1 cut(s) | 719 |
| AdeI | CACNNNGTG | 1 cut(s) | 165 |
| AfaI | GTAC | 6 cut(s) | 250, 352, 657, 1684, 2482, 2519 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 141, 185, 258, 1121, 1832, 1915, 1916, 2037, 2913 |
| AflIII | ACRYGT | 1 cut(s) | 69 |
| AjnI | CCWGG | 6 cut(s) | 391, 724, 1795, 2455, 2520, 2964 |
| AleI | CACNNNNGTG | 1 cut(s) | 1404 |
| Alw21I | GWGCWC | 2 cut(s) | 408, 1401 |
| Alw26I | GTCTC | 9 cut(s) | 267, 309, 402, 621, 652, 784, 1548, 2628, 2964 |
| AlwI | GGATC | 5 cut(s) | 170, 1291, 1973, 2888, 2990 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3012 |
| Ama87I | CYCGRG | 1 cut(s) | 1915 |
| AoxI | GGCC | 4 cut(s) | 389, 1067, 1161, 1810 |
| ApeKI | GCWGC | 5 cut(s) | 321, 432, 2018, 2105, 2238 |
| ApoI | RAATTY | 3 cut(s) | 240, 856, 2761 |
| AseI | ATTAAT | 1 cut(s) | 519 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2948 |
| Asp718I | GGTACC | 1 cut(s) | 248 |
| AspS9I | GGNCC | 2 cut(s) | 389, 1355 |
| AsuC2I | CCSGG | 3 cut(s) | 1916, 1917, 2771 |
| AsuHPI | GGTGA | 5 cut(s) | 296, 338, 714, 1931, 2896 |
| AvaI | CYCGRG | 1 cut(s) | 1915 |
| AvaII | GGWCC | 1 cut(s) | 1355 |
| AxyI | CCTNAGG | 1 cut(s) | 961 |
| BaeGI | GKGCMC | 1 cut(s) | 487 |
| BanI | GGYRCC | 1 cut(s) | 248 |
| BauI | CACGAG | 1 cut(s) | 219 |
| BbrPI | CACGTG | 1 cut(s) | 72 |
| BbsI | GAAGAC | 3 cut(s) | 828, 1092, 1122 |
| Bbv12I | GWGCWC | 2 cut(s) | 408, 1401 |
| BbvI | GCAGC | 5 cut(s) | 308, 419, 2030, 2092, 2225 |
| BceAI | ACGGC | 3 cut(s) | 334, 982, 1797 |
| BciT130I | CCWGG | 6 cut(s) | 393, 726, 1797, 2457, 2522, 2966 |
| BcnI | CCSGG | 3 cut(s) | 1916, 1917, 2771 |
| BcoDI | GTCTC | 9 cut(s) | 267, 309, 402, 621, 652, 784, 1548, 2628, 2964 |
| BfaI | CTAG | 9 cut(s) | 162, 266, 296, 312, 681, 975, 1359, 2022, 2115 |
| BfmI | CTRYAG | 2 cut(s) | 567, 2529 |
| BfuAI | ACCTGC | 3 cut(s) | 338, 1144, 2353 |
| BglII | AGATCT | 1 cut(s) | 195 |
| BisI | GCNGC | 6 cut(s) | 322, 433, 2019, 2106, 2147, 2239 |
| BlpI | GCTNAGC | 1 cut(s) | 1092 |
| BlsI | GCNGC | 6 cut(s) | 323, 434, 2020, 2107, 2148, 2240 |
| Bme1390I | CCNGG | 9 cut(s) | 393, 726, 1797, 1916, 1917, 2457, 2522, 2771, 2966 |
| Bme18I | GGWCC | 1 cut(s) | 1355 |
| BmeT110I | CYCGRG | 1 cut(s) | 1915 |
| BmgT120I | GGNCC | 2 cut(s) | 389, 1355 |
| BmiI | GGNNCC | 6 cut(s) | 226, 250, 546, 705, 958, 1899 |
| BmrFI | CCNGG | 9 cut(s) | 393, 726, 1797, 1916, 1917, 2457, 2522, 2771, 2966 |
| BpiI | GAAGAC | 3 cut(s) | 828, 1092, 1122 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1092 |
| BpuMI | CCSGG | 3 cut(s) | 1916, 1917, 2771 |
| BsaAI | YACGTR | 1 cut(s) | 72 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2994 |
| BsaHI | GRCGYC | 1 cut(s) | 719 |
| BsaI | GGTCTC | 3 cut(s) | 267, 402, 784 |
| BsaJI | CCNNGG | 8 cut(s) | 392, 725, 1807, 1813, 1893, 1915, 2299, 2769 |
| BsaWI | WCCGGW | 1 cut(s) | 178 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 108, 138 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 141, 185, 258, 1121, 1832, 1915, 1916, 2037, 2913 |
| Bse1I | ACTGG | 4 cut(s) | 1466, 1649, 2421, 2832 |
| Bse21I | CCTNAGG | 1 cut(s) | 961 |
| Bse3DI | GCAATG | 2 cut(s) | 87, 2991 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2994 |
| BseBI | CCWGG | 6 cut(s) | 393, 726, 1797, 2457, 2522, 2966 |
| BseDI | CCNNGG | 8 cut(s) | 392, 725, 1807, 1813, 1893, 1915, 2299, 2769 |
| BseGI | GGATG | 8 cut(s) | 16, 1277, 1822, 1894, 1911, 2215, 2313, 2995 |
| BseJI | GATNNNNATC | 1 cut(s) | 2994 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 141, 185, 258, 1121, 1832, 1915, 1916, 2037, 2913 |
| BseMI | GCAATG | 2 cut(s) | 87, 2991 |
| BseMII | CTCAG | 4 cut(s) | 632, 975, 1083, 2180 |
| BseNI | ACTGG | 4 cut(s) | 1466, 1649, 2421, 2832 |
| BseRI | GAGGAG | 3 cut(s) | 129, 1505, 1742 |
| BseSI | GKGCMC | 1 cut(s) | 487 |
| BseXI | GCAGC | 5 cut(s) | 308, 419, 2030, 2092, 2225 |
| BsgI | GTGCAG | 3 cut(s) | 366, 1556, 2224 |
| Bsh1285I | CGRYCG | 1 cut(s) | 256 |
| BshFI | GGCC | 4 cut(s) | 391, 1069, 1163, 1812 |
| BshNI | GGYRCC | 1 cut(s) | 248 |
| BsiEI | CGRYCG | 1 cut(s) | 256 |
| BsiHKAI | GWGCWC | 2 cut(s) | 408, 1401 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1915 |
| BsiSI | CCGG | 3 cut(s) | 179, 1916, 2771 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 141, 185, 258, 1121, 1832, 1915, 1916, 2037, 2913 |
| BsmAI | GTCTC | 9 cut(s) | 267, 309, 402, 621, 652, 784, 1548, 2628, 2964 |
| BsmBI | CGTCTC | 2 cut(s) | 309, 621 |
| BsmI | GAATGC | 3 cut(s) | 441, 1910, 2437 |
| BsnI | GGCC | 4 cut(s) | 391, 1069, 1163, 1812 |
| Bso31I | GGTCTC | 3 cut(s) | 267, 402, 784 |
| BsoBI | CYCGRG | 1 cut(s) | 1915 |
| Bsp1286I | GDGCHC | 3 cut(s) | 408, 487, 1401 |
| Bsp143I | GATC | 9 cut(s) | 175, 195, 253, 466, 1296, 1978, 2398, 2893, 2995 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1092 |
| BspACI | CCGC | 4 cut(s) | 259, 324, 1849, 2146 |
| BspANI | GGCC | 4 cut(s) | 391, 1069, 1163, 1812 |
| BspCNI | CTCAG | 4 cut(s) | 631, 974, 1084, 2181 |
| BspHI | TCATGA | 2 cut(s) | 400, 2626 |
| BspLI | GGNNCC | 6 cut(s) | 226, 250, 546, 705, 958, 1899 |
| BspMAI | CTGCAG | 1 cut(s) | 2533 |
| BspMI | ACCTGC | 3 cut(s) | 338, 1144, 2353 |
| BspPI | GGATC | 5 cut(s) | 170, 1291, 1973, 2888, 2990 |
| BspQI | GCTCTTC | 1 cut(s) | 1051 |
| BspT107I | GGYRCC | 1 cut(s) | 248 |
| BspTNI | GGTCTC | 3 cut(s) | 267, 402, 784 |
| BsrDI | GCAATG | 2 cut(s) | 87, 2991 |
| BsrI | ACTGG | 4 cut(s) | 1466, 1649, 2421, 2832 |
| BssECI | CCNNGG | 8 cut(s) | 392, 725, 1807, 1813, 1893, 1915, 2299, 2769 |
| BssMI | GATC | 9 cut(s) | 175, 195, 253, 466, 1296, 1978, 2398, 2893, 2995 |
| BssNI | GRCGYC | 1 cut(s) | 719 |
| BssSI | CACGAG | 1 cut(s) | 219 |
| BssT1I | CCWWGG | 1 cut(s) | 2299 |
| Bst2BI | CACGAG | 1 cut(s) | 219 |
| Bst2UI | CCWGG | 6 cut(s) | 393, 726, 1797, 2457, 2522, 2966 |
| Bst4CI | ACNGT | 8 cut(s) | 564, 830, 1261, 1954, 2230, 2332, 2393, 2908 |
| Bst6I | CTCTTC | 7 cut(s) | 114, 637, 1051, 1683, 1704, 1838, 2750 |
| BstACI | GRCGYC | 1 cut(s) | 719 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 344, 2975 |
| BstBAI | YACGTR | 1 cut(s) | 72 |
| BstC8I | GCNNGC | 5 cut(s) | 78, 1151, 1463, 1820, 2610 |
| BstDEI | CTNAG | 7 cut(s) | 49, 276, 618, 961, 1092, 2189, 2660 |
| BstDSI | CCRYGG | 1 cut(s) | 1813 |
| BstF5I | GGATG | 8 cut(s) | 16, 1277, 1822, 1894, 1911, 2215, 2313, 2995 |
| BstKTI | GATC | 9 cut(s) | 178, 198, 256, 469, 1299, 1981, 2401, 2896, 2998 |
| BstMAI | GTCTC | 9 cut(s) | 267, 309, 402, 621, 652, 784, 1548, 2628, 2964 |
| BstMBI | GATC | 9 cut(s) | 175, 195, 253, 466, 1296, 1978, 2398, 2893, 2995 |
| BstMCI | CGRYCG | 1 cut(s) | 256 |
| BstNI | CCWGG | 6 cut(s) | 393, 726, 1797, 2457, 2522, 2966 |
| BstNSI | RCATGY | 1 cut(s) | 476 |
| BstSCI | CCNGG | 9 cut(s) | 391, 724, 1795, 1914, 1915, 2455, 2520, 2769, 2964 |
| BstSFI | CTRYAG | 2 cut(s) | 567, 2529 |
| BstSLI | GKGCMC | 1 cut(s) | 487 |
| BstV1I | GCAGC | 5 cut(s) | 308, 419, 2030, 2092, 2225 |
| BstV2I | GAAGAC | 3 cut(s) | 828, 1092, 1122 |
| BstX2I | RGATCY | 2 cut(s) | 195, 1296 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2284 |
| BstYI | RGATCY | 2 cut(s) | 195, 1296 |
| Bsu36I | CCTNAGG | 1 cut(s) | 961 |
| BsuRI | GGCC | 4 cut(s) | 391, 1069, 1163, 1812 |
| BtgI | CCRYGG | 1 cut(s) | 1813 |
| BtgZI | GCGATG | 2 cut(s) | 154, 422 |
| BtsCI | GGATG | 8 cut(s) | 16, 1277, 1822, 1894, 1911, 2215, 2313, 2995 |
| BtsI | GCAGTG | 2 cut(s) | 22, 1518 |
| BtsIMutI | CAGTG | 6 cut(s) | 22, 835, 1473, 1518, 2398, 2729 |
| BveI | ACCTGC | 3 cut(s) | 338, 1144, 2353 |
| Cac8I | GCNNGC | 5 cut(s) | 78, 1151, 1463, 1820, 2610 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3012 |
| CciI | TCATGA | 2 cut(s) | 400, 2626 |
| Cfr13I | GGNCC | 2 cut(s) | 389, 1355 |
| Cfr9I | CCCGGG | 1 cut(s) | 1915 |
| CseI | GACGC | 3 cut(s) | 338, 708, 989 |
| Csp6I | GTAC | 6 cut(s) | 249, 351, 656, 1683, 2481, 2518 |
| CviQI | GTAC | 6 cut(s) | 249, 351, 656, 1683, 2481, 2518 |
| DdeI | CTNAG | 7 cut(s) | 49, 276, 618, 961, 1092, 2189, 2660 |
| DpnI | GATC | 9 cut(s) | 177, 197, 255, 468, 1298, 1980, 2400, 2895, 2997 |
| DpnII | GATC | 9 cut(s) | 175, 195, 253, 466, 1296, 1978, 2398, 2893, 2995 |
| DraIII | CACNNNGTG | 1 cut(s) | 165 |
| EaeI | YGGCCR | 1 cut(s) | 1161 |
| Eam1104I | CTCTTC | 7 cut(s) | 114, 637, 1051, 1683, 1704, 1838, 2750 |
| EarI | CTCTTC | 7 cut(s) | 114, 637, 1051, 1683, 1704, 1838, 2750 |
| EciI | GGCGGA | 1 cut(s) | 1864 |
| Eco130I | CCWWGG | 1 cut(s) | 2299 |
| Eco147I | AGGCCT | 1 cut(s) | 1069 |
| Eco31I | GGTCTC | 3 cut(s) | 267, 402, 784 |
| Eco32I | GATATC | 2 cut(s) | 46, 2098 |
| Eco47I | GGWCC | 1 cut(s) | 1355 |
| Eco57I | CTGAAG | 5 cut(s) | 840, 1765, 1862, 2654, 2989 |
| Eco72I | CACGTG | 1 cut(s) | 72 |
| Eco81I | CCTNAGG | 1 cut(s) | 961 |
| Eco88I | CYCGRG | 1 cut(s) | 1915 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1355 |
| EcoRII | CCWGG | 6 cut(s) | 391, 724, 1795, 2455, 2520, 2964 |
| EcoRV | GATATC | 2 cut(s) | 46, 2098 |
| EcoT14I | CCWWGG | 1 cut(s) | 2299 |
| EcoT22I | ATGCAT | 1 cut(s) | 2494 |
| ErhI | CCWWGG | 1 cut(s) | 2299 |
| Esp3I | CGTCTC | 2 cut(s) | 309, 621 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 32, 64, 1033, 1065 |
| FauNDI | CATATG | 1 cut(s) | 416 |
| FblI | GTMKAC | 1 cut(s) | 566 |
| Fnu4HI | GCNGC | 6 cut(s) | 322, 433, 2019, 2106, 2147, 2239 |
| FokI | GGATG | 8 cut(s) | 23, 1264, 1809, 1898, 1901, 2222, 2300, 3002 |
| Fsp4HI | GCNGC | 6 cut(s) | 322, 433, 2019, 2106, 2147, 2239 |
| FspBI | CTAG | 9 cut(s) | 162, 266, 296, 312, 681, 975, 1359, 2022, 2115 |
| GluI | GCNGC | 6 cut(s) | 322, 433, 2019, 2106, 2147, 2239 |
| HaeIII | GGCC | 4 cut(s) | 391, 1069, 1163, 1812 |
| HapII | CCGG | 3 cut(s) | 179, 1916, 2771 |
| HgaI | GACGC | 3 cut(s) | 338, 708, 989 |
| Hin1I | GRCGYC | 1 cut(s) | 719 |
| HincII | GTYRAC | 1 cut(s) | 1344 |
| HindII | GTYRAC | 1 cut(s) | 1344 |
| HindIII | AAGCTT | 1 cut(s) | 2657 |
| HpaII | CCGG | 3 cut(s) | 179, 1916, 2771 |
| HphI | GGTGA | 5 cut(s) | 296, 338, 714, 1931, 2896 |
| Hpy166II | GTNNAC | 5 cut(s) | 567, 676, 1344, 1471, 2353 |
| Hpy8I | GTNNAC | 5 cut(s) | 567, 676, 1344, 1471, 2353 |
| HpyCH4III | ACNGT | 8 cut(s) | 564, 830, 1261, 1954, 2230, 2332, 2393, 2908 |
| HpyCH4IV | ACGT | 2 cut(s) | 71, 654 |
| HpyF3I | CTNAG | 7 cut(s) | 49, 276, 618, 961, 1092, 2189, 2660 |
| HpySE526I | ACGT | 2 cut(s) | 71, 654 |
| Hsp92I | GRCGYC | 1 cut(s) | 719 |
| KpnI | GGTACC | 1 cut(s) | 252 |
| Kzo9I | GATC | 9 cut(s) | 175, 195, 253, 466, 1296, 1978, 2398, 2893, 2995 |
| LguI | GCTCTTC | 1 cut(s) | 1051 |
| LmnI | GCTCC | 1 cut(s) | 709 |
| Lsp1109I | GCAGC | 5 cut(s) | 308, 419, 2030, 2092, 2225 |
| MaeI | CTAG | 9 cut(s) | 162, 266, 296, 312, 681, 975, 1359, 2022, 2115 |
| MaeII | ACGT | 2 cut(s) | 71, 654 |
| MaeIII | GTNAC | 8 cut(s) | 284, 326, 720, 977, 1867, 1954, 2663, 2778 |
| MalI | GATC | 9 cut(s) | 177, 197, 255, 468, 1298, 1980, 2400, 2895, 2997 |
| MboI | GATC | 9 cut(s) | 175, 195, 253, 466, 1296, 1978, 2398, 2893, 2995 |
| MfeI | CAATTG | 1 cut(s) | 2859 |
| MflI | RGATCY | 2 cut(s) | 195, 1296 |
| MhlI | GDGCHC | 3 cut(s) | 408, 487, 1401 |
| MlyI | GAGTC | 4 cut(s) | 281, 654, 1136, 1471 |
| MmeI | TCCRAC | 2 cut(s) | 91, 1753 |
| Mph1103I | ATGCAT | 1 cut(s) | 2494 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2948 |
| MseI | TTAA | 8 cut(s) | 39, 519, 786, 939, 1107, 2078, 2246, 2292 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1404, 2607 |
| MspI | CCGG | 3 cut(s) | 179, 1916, 2771 |
| MspR9I | CCNGG | 9 cut(s) | 393, 726, 1797, 1916, 1917, 2457, 2522, 2771, 2966 |
| MunI | CAATTG | 1 cut(s) | 2859 |
| Mva1269I | GAATGC | 3 cut(s) | 441, 1910, 2437 |
| MvaI | CCWGG | 6 cut(s) | 393, 726, 1797, 2457, 2522, 2966 |
| NciI | CCSGG | 3 cut(s) | 1916, 1917, 2771 |
| NdeI | CATATG | 1 cut(s) | 416 |
| NdeII | GATC | 9 cut(s) | 175, 195, 253, 466, 1296, 1978, 2398, 2893, 2995 |
| NlaIV | GGNNCC | 6 cut(s) | 226, 250, 546, 705, 958, 1899 |
| NmeAIII | GCCGAG | 1 cut(s) | 1918 |
| NmuCI | GTSAC | 5 cut(s) | 284, 326, 720, 977, 2663 |
| NsiI | ATGCAT | 1 cut(s) | 2494 |
| NspI | RCATGY | 1 cut(s) | 476 |
| OliI | CACNNNNGTG | 1 cut(s) | 1404 |
| PagI | TCATGA | 2 cut(s) | 400, 2626 |
| PaqCI | CACCTGC | 1 cut(s) | 1144 |
| PceI | AGGCCT | 1 cut(s) | 1069 |
| PciSI | GCTCTTC | 1 cut(s) | 1051 |
| PctI | GAATGC | 3 cut(s) | 441, 1910, 2437 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2948 |
| PfeI | GAWTC | 7 cut(s) | 833, 899, 2135, 2309, 2630, 2901, 3009 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1121 |
| PkrI | GCNGC | 6 cut(s) | 323, 434, 2020, 2107, 2148, 2240 |
| Ple19I | CGATCG | 1 cut(s) | 256 |
| PleI | GAGTC | 4 cut(s) | 280, 653, 1135, 1471 |
| PmaCI | CACGTG | 1 cut(s) | 72 |
| PmlI | CACGTG | 1 cut(s) | 72 |
| PpsI | GAGTC | 4 cut(s) | 280, 653, 1135, 1471 |
| Ppu21I | YACGTR | 1 cut(s) | 72 |
| PpuMI | RGGWCCY | 1 cut(s) | 1355 |
| PshBI | ATTAAT | 1 cut(s) | 519 |
| Psp5II | RGGWCCY | 1 cut(s) | 1355 |
| Psp6I | CCWGG | 6 cut(s) | 391, 724, 1795, 2455, 2520, 2964 |
| PspCI | CACGTG | 1 cut(s) | 72 |
| PspGI | CCWGG | 6 cut(s) | 391, 724, 1795, 2455, 2520, 2964 |
| PspN4I | GGNNCC | 6 cut(s) | 226, 250, 546, 705, 958, 1899 |
| PspPI | GGNCC | 2 cut(s) | 389, 1355 |
| PspPPI | RGGWCCY | 1 cut(s) | 1355 |
| PstI | CTGCAG | 1 cut(s) | 2533 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3012 |
| PsuI | RGATCY | 2 cut(s) | 195, 1296 |
| PvuI | CGATCG | 1 cut(s) | 256 |
| RsaI | GTAC | 6 cut(s) | 250, 352, 657, 1684, 2482, 2519 |
| RsaNI | GTAC | 6 cut(s) | 249, 351, 656, 1683, 2481, 2518 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1404, 2607 |
| SapI | GCTCTTC | 1 cut(s) | 1051 |
| SaqAI | TTAA | 8 cut(s) | 39, 519, 786, 939, 1107, 2078, 2246, 2292 |
| SatI | GCNGC | 6 cut(s) | 322, 433, 2019, 2106, 2147, 2239 |
| Sau3AI | GATC | 9 cut(s) | 175, 195, 253, 466, 1296, 1978, 2398, 2893, 2995 |
| Sau96I | GGNCC | 2 cut(s) | 389, 1355 |
| SchI | GAGTC | 4 cut(s) | 281, 654, 1136, 1471 |
| ScrFI | CCNGG | 9 cut(s) | 393, 726, 1797, 1916, 1917, 2457, 2522, 2771, 2966 |
| SduI | GDGCHC | 3 cut(s) | 408, 487, 1401 |
| SfcI | CTRYAG | 2 cut(s) | 567, 2529 |
| SinI | GGWCC | 1 cut(s) | 1355 |
| SmaI | CCCGGG | 1 cut(s) | 1917 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1404, 2607 |
| SseBI | AGGCCT | 1 cut(s) | 1069 |
| SsiI | CCGC | 4 cut(s) | 259, 324, 1849, 2146 |
| SspI | AATATT | 1 cut(s) | 517 |
| SspMI | CTAG | 9 cut(s) | 162, 266, 296, 312, 681, 975, 1359, 2022, 2115 |
| StuI | AGGCCT | 1 cut(s) | 1069 |
| StyD4I | CCNGG | 9 cut(s) | 391, 724, 1795, 1914, 1915, 2455, 2520, 2769, 2964 |
| StyI | CCWWGG | 1 cut(s) | 2299 |
| TaaI | ACNGT | 8 cut(s) | 564, 830, 1261, 1954, 2230, 2332, 2393, 2908 |
| TaiI | ACGT | 2 cut(s) | 74, 657 |
| TaqI | TCGA | 4 cut(s) | 210, 929, 2899, 2994 |
| TaqII | GACCGA | 1 cut(s) | 766 |
| TatI | WGTACW | 1 cut(s) | 1682 |
| TauI | GCSGC | 1 cut(s) | 2149 |
| TfiI | GAWTC | 7 cut(s) | 833, 899, 2135, 2309, 2630, 2901, 3009 |
| Tru1I | TTAA | 8 cut(s) | 39, 519, 786, 939, 1107, 2078, 2246, 2292 |
| Tru9I | TTAA | 8 cut(s) | 39, 519, 786, 939, 1107, 2078, 2246, 2292 |
| TscAI | CASTG | 6 cut(s) | 22, 835, 1473, 1518, 2398, 2736 |
| TseFI | GTSAC | 5 cut(s) | 284, 326, 720, 977, 2663 |
| TseI | GCWGC | 5 cut(s) | 321, 432, 2018, 2105, 2238 |
| Tsp45I | GTSAC | 5 cut(s) | 284, 326, 720, 977, 2663 |
| TspGWI | ACGGA | 1 cut(s) | 2468 |
| TspMI | CCCGGG | 1 cut(s) | 1915 |
| TspRI | CASTG | 6 cut(s) | 22, 835, 1473, 1518, 2398, 2736 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1121 |
| VpaK11BI | GGWCC | 1 cut(s) | 1355 |
| VspI | ATTAAT | 1 cut(s) | 519 |
| XapI | RAATTY | 3 cut(s) | 240, 856, 2761 |
| XceI | RCATGY | 1 cut(s) | 476 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1641 |
| XmaI | CCCGGG | 1 cut(s) | 1915 |
| XmiI | GTMKAC | 1 cut(s) | 566 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2948 |
| XspI | CTAG | 9 cut(s) | 162, 266, 296, 312, 681, 975, 1359, 2022, 2115 |
| Zsp2I | ATGCAT | 1 cut(s) | 2494 |