Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005383

Physical Location & Seq

Genomic Coordinates Reverse (-)

28398526 .. 28399374

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0163100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCTCTCTCTTTTTCTCTCACGCCGCTCTCCTTTAGGGTTTGTAAGCGATGGCGGCTTGGCTCCTTTGGGCTGGGATGGAGTCCCAATCTCTTCTCTGGGCTCTCATGAGGGTGGCGTCAATGTCTCTGTGCGTTGGCTATCCCTGGCATCAAGAGGTTTTGGCCTCCTCCTTCTCCTTGCATGTTTTCTGTTTGGTGGCTCGCTTCAGGCGTATCGGGTGTGTTTCGACGGCGATTTGGGCAACGGAGACGTTGTTCTGAAAGGGGAATTTTTGGTGGATTGGGATGGCGGTGATCCAGTGGTTCCACCGTTGTTTGGCAGTGAAGACGACGGTGGTGGTTTTGATGTTGGTATCAACGGCAGTGATGGCGTACGTGGGTGCTGTTGTGGCCTTTCTTCTCCGACTGTTCCCGGTAGCAGGAGTCACAGCCCAATTCTTGGGTTGATGGTGGTTAGTGGTGATGGGTTGCAGGCAGGTGCTATGGCCCTCGTCGTCGGCTTTGGCGATGCGGTTAGGGGCGTAGGTCTGTGGTCTGGCGGTGCCGTGCATCTCGGTCGGGTTTGGGCCCCTGGGTGCGATGCATATAGCGGCTGTTATGGAGGTGGTATCGGTTTGCTGGATACTATGGGGATTGGTCAACAGATCAGAGGTGCTTTGGCTATTGGCTTTGCGGGAGGTGCAGAGGCTGGTGGAGGAGTCGCGGTCGTGAGCATGAAGGCTTTCACCCTGGGCGTGGGGATCAATATGACCACAGTAATAGTACCCCCTTCTGTTGGGAAGGAGCACATGTCTTCTGGTAAAGATCCTGCACTGGAGGAACACACTCTCATGAGTGCCCTAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

282

Amino Acids

28.24

Weight (kDa)

4.74

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55310
fragaria_vesca	FvH4_4g16730 FvH4_4g16730
malus_domestica	MD00G1109500.v1.1 MD13G1176900.v1.1 MD16G1178600.v1.1
prunus_persica	Prupe.1G146000_v2.0.a1 Prupe.1G146000_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1
pyrus_communis	pycom10g21080 pycom13g15260 pycom16g15010
rosa_chinensis	RchiOBHm_Chr4g0420301
rosa_laevigata	RLG00000003998 RLG00000007777 RLG00000007780
rosa_multiflora	Rmu_sc0001767.1_g000005
rosa_roxburghii	Rroxscaffold_5G00362940
rosa_rugosa	Rorug04G0163000 Rorug04G0163100 Rorug04G0163200
rosa_samantha	Rh4AG224100 Rh4BG227100 Rh4CG238200
rosa_wichuraiana	Rw4G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	467
AccB1I	GGYRCC	1 cut(s)	542
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	27
AccII	CGCG	1 cut(s)	704
AciI	CCGC	8 cut(s)	25, 54, 291, 512, 540, 591, 674, 704
AclWI	GGATC	3 cut(s)	290, 749, 800
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	375, 765
AfiI	CCNNNNNNNGG	5 cut(s)	317, 420, 440, 736, 776
AflIII	ACRYGT	1 cut(s)	789
AjnI	CCWGG	3 cut(s)	144, 571, 729
AloI	GAACNNNNNNTCC	2 cut(s)	240, 272
Alw21I	GWGCWC	1 cut(s)	789
Alw26I	GTCTC	2 cut(s)	130, 243
AlwI	GGATC	3 cut(s)	290, 749, 800
AlwNI	CAGNNNCTG	1 cut(s)	689
AoxI	GGCC	4 cut(s)	163, 391, 486, 567
ApaI	GGGCCC	1 cut(s)	571
ApoI	RAATTY	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	722
AspS9I	GGNCC	3 cut(s)	487, 567, 568
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	3 cut(s)	305, 473, 718
BaeGI	GKGCMC	2 cut(s)	571, 841
BanI	GGYRCC	1 cut(s)	542
BanII	GRGCYC	2 cut(s)	104, 571
BbsI	GAAGAC	2 cut(s)	333, 786
Bbv12I	GWGCWC	1 cut(s)	789
BccI	CCATC	6 cut(s)	44, 71, 281, 362, 442, 458
BceAI	ACGGC	3 cut(s)	247, 376, 530
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	3 cut(s)	146, 573, 731
BciVI	GTATCC	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	130, 243
BfaI	CTAG	1 cut(s)	842
BfuAI	ACCTGC	1 cut(s)	467
BfuI	GTATCC	1 cut(s)	616
BisI	GCNGC	3 cut(s)	25, 55, 592
BlsI	GCNGC	3 cut(s)	26, 56, 593
Bme1390I	CCNGG	4 cut(s)	146, 414, 573, 731
BmgT120I	GGNCC	3 cut(s)	487, 567, 568
BmiI	GGNNCC	5 cut(s)	63, 306, 544, 569, 570
BmrFI	CCNGG	4 cut(s)	146, 414, 573, 731
BmsI	GCATC	4 cut(s)	158, 499, 559, 571
BpiI	GAAGAC	2 cut(s)	333, 786
BpmI	CTGGAG	1 cut(s)	836
BpuMI	CCSGG	1 cut(s)	414
BsaAI	YACGTR	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	5 cut(s)	144, 571, 572, 729, 730
BsaXI	ACNNNNNCTCC	6 cut(s)	240, 270, 690, 720, 776, 806
Bsc4I	CCNNNNNNNGG	5 cut(s)	317, 420, 440, 736, 776
Bse1I	ACTGG	2 cut(s)	299, 819
BseBI	CCWGG	3 cut(s)	146, 573, 731
BseDI	CCNNGG	5 cut(s)	144, 571, 572, 729, 730
BseGI	GGATG	2 cut(s)	82, 292
BseLI	CCNNNNNNNGG	5 cut(s)	317, 420, 440, 736, 776
BseNI	ACTGG	2 cut(s)	299, 819
BseRI	GAGGAG	2 cut(s)	158, 711
BseSI	GKGCMC	2 cut(s)	571, 841
BseYI	CCCAGC	1 cut(s)	72
BsgI	GTGCAG	2 cut(s)	702, 795
Bsh1236I	CGCG	1 cut(s)	704
Bsh1285I	CGRYCG	2 cut(s)	559, 708
BshFI	GGCC	4 cut(s)	165, 393, 488, 569
BshNI	GGYRCC	1 cut(s)	542
BsiEI	CGRYCG	2 cut(s)	559, 708
BsiHKAI	GWGCWC	1 cut(s)	789
BsiSI	CCGG	1 cut(s)	414
BsiWI	CGTACG	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	5 cut(s)	317, 420, 440, 736, 776
BsmAI	GTCTC	2 cut(s)	130, 243
BsmBI	CGTCTC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	4 cut(s)	165, 393, 488, 569
Bsp120I	GGGCCC	1 cut(s)	567
Bsp1286I	GDGCHC	4 cut(s)	104, 571, 789, 841
Bsp143I	GATC	4 cut(s)	295, 645, 741, 805
BspACI	CCGC	8 cut(s)	25, 54, 291, 512, 540, 591, 674, 704
BspANI	GGCC	4 cut(s)	165, 393, 488, 569
BspFNI	CGCG	1 cut(s)	704
BspHI	TCATGA	2 cut(s)	106, 831
BspLI	GGNNCC	5 cut(s)	63, 306, 544, 569, 570
BspMI	ACCTGC	1 cut(s)	467
BspPI	GGATC	3 cut(s)	290, 749, 800
BspT107I	GGYRCC	1 cut(s)	542
BsrBI	CCGCTC	1 cut(s)	27
BsrI	ACTGG	2 cut(s)	299, 819
BssECI	CCNNGG	5 cut(s)	144, 571, 572, 729, 730
BssMI	GATC	4 cut(s)	295, 645, 741, 805
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	3 cut(s)	146, 573, 731
Bst4CI	ACNGT	4 cut(s)	312, 335, 409, 757
Bst6I	CTCTTC	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	203, 474
BstF5I	GGATG	2 cut(s)	82, 292
BstFNI	CGCG	1 cut(s)	704
BstKTI	GATC	4 cut(s)	298, 648, 744, 808
BstMAI	GTCTC	2 cut(s)	130, 243
BstMBI	GATC	4 cut(s)	295, 645, 741, 805
BstMCI	CGRYCG	2 cut(s)	559, 708
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 240, 369, 390, 680
BstNI	CCWGG	3 cut(s)	146, 573, 731
BstNSI	RCATGY	2 cut(s)	186, 793
BstSCI	CCNGG	4 cut(s)	144, 412, 571, 729
BstSLI	GKGCMC	2 cut(s)	571, 841
BstUI	CGCG	1 cut(s)	704
BstV2I	GAAGAC	2 cut(s)	333, 786
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
BsuI	GTATCC	1 cut(s)	616
BsuRI	GGCC	4 cut(s)	165, 393, 488, 569
BtgZI	GCGATG	3 cut(s)	63, 522, 594
BtsCI	GGATG	2 cut(s)	82, 292
BtsI	GCAGTG	2 cut(s)	328, 370
BtsIMutI	CAGTG	4 cut(s)	306, 328, 370, 812
BveI	ACCTGC	1 cut(s)	467
Cac8I	GCNNGC	2 cut(s)	203, 474
CaiI	CAGNNNCTG	1 cut(s)	689
CciI	TCATGA	2 cut(s)	106, 831
Cfr13I	GGNCC	3 cut(s)	487, 567, 568
CseI	GACGC	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	374, 764
CviAII	CATG	5 cut(s)	107, 183, 715, 790, 832
CviQI	GTAC	2 cut(s)	374, 764
DpnI	GATC	4 cut(s)	297, 647, 743, 807
DpnII	GATC	4 cut(s)	295, 645, 741, 805
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
Eco24I	GRGCYC	2 cut(s)	104, 571
Eco57I	CTGAAG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRII	CCWGG	3 cut(s)	144, 571, 729
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	2 cut(s)	104, 571
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	5 cut(s)	110, 186, 718, 793, 835
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	5 cut(s)	106, 182, 714, 789, 831
FauI	CCCGC	1 cut(s)	667
Fnu4HI	GCNGC	3 cut(s)	25, 55, 592
FokI	GGATG	2 cut(s)	89, 299
FriOI	GRGCYC	2 cut(s)	104, 571
Fsp4HI	GCNGC	3 cut(s)	25, 55, 592
FspBI	CTAG	1 cut(s)	842
GluI	GCNGC	3 cut(s)	25, 55, 592
GsaI	CCCAGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	836
HaeIII	GGCC	4 cut(s)	165, 393, 488, 569
HapII	CCGG	1 cut(s)	414
HgaI	GACGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	5 cut(s)	110, 186, 718, 793, 835
HincII	GTYRAC	1 cut(s)	641
HindII	GTYRAC	1 cut(s)	641
HinfI	GANTC	3 cut(s)	81, 424, 699
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	3 cut(s)	305, 473, 718
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	3 cut(s)	261, 405, 650
Hpy188III	TCNNGA	4 cut(s)	107, 153, 709, 832
Hpy8I	GTNNAC	1 cut(s)	641
Hpy99I	CGWCG	4 cut(s)	233, 335, 497, 500
HpyAV	CCTTC	4 cut(s)	182, 712, 775, 780
HpyCH4III	ACNGT	4 cut(s)	312, 335, 409, 757
HpyCH4IV	ACGT	2 cut(s)	252, 376
HpyCH4V	TGCA	6 cut(s)	182, 472, 550, 584, 683, 812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 240, 369, 390, 680
HpySE526I	ACGT	2 cut(s)	252, 376
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	5 cut(s)	110, 186, 718, 793, 835
Kzo9I	GATC	4 cut(s)	295, 645, 741, 805
LmnI	GCTCC	2 cut(s)	67, 784
LweI	GCATC	4 cut(s)	158, 499, 559, 571
MaeI	CTAG	1 cut(s)	842
MaeII	ACGT	2 cut(s)	252, 376
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	4 cut(s)	297, 647, 743, 807
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	4 cut(s)	295, 645, 741, 805
MboII	GAAGA	4 cut(s)	84, 338, 390, 786
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	4 cut(s)	104, 571, 789, 841
MluCI	AATT	2 cut(s)	269, 435
MlyI	GAGTC	3 cut(s)	90, 433, 708
MmeI	TCCRAC	1 cut(s)	428
Mph1103I	ATGCAT	1 cut(s)	586
MroXI	GAANNNNTTC	1 cut(s)	722
MslI	CAYNNNNRTG	2 cut(s)	111, 830
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	4 cut(s)	146, 414, 573, 731
MvaI	CCWGG	3 cut(s)	146, 573, 731
MvnI	CGCG	1 cut(s)	704
MwoI	GCNNNNNNNGC	5 cut(s)	54, 240, 369, 390, 680
NciI	CCSGG	1 cut(s)	414
NdeII	GATC	4 cut(s)	295, 645, 741, 805
NlaIII	CATG	5 cut(s)	110, 186, 718, 793, 835
NlaIV	GGNNCC	5 cut(s)	63, 306, 544, 569, 570
NmuCI	GTSAC	1 cut(s)	425
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	2 cut(s)	186, 793
PagI	TCATGA	2 cut(s)	106, 831
PaqCI	CACCTGC	1 cut(s)	467
PasI	CCCWGGG	2 cut(s)	572, 730
PciI	ACATGT	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	2 cut(s)	209, 504
PdmI	GAANNNNTTC	1 cut(s)	722
Pfl23II	CGTACG	1 cut(s)	373
PflMI	CCANNNNNTGG	1 cut(s)	440
PkrI	GCNGC	3 cut(s)	26, 56, 593
PleI	GAGTC	3 cut(s)	89, 432, 707
PpsI	GAGTC	3 cut(s)	89, 432, 707
Ppu21I	YACGTR	1 cut(s)	377
PscI	ACATGT	1 cut(s)	789
Psp6I	CCWGG	3 cut(s)	144, 571, 729
PspFI	CCCAGC	1 cut(s)	72
PspGI	CCWGG	3 cut(s)	144, 571, 729
PspLI	CGTACG	1 cut(s)	373
PspN4I	GGNNCC	5 cut(s)	63, 306, 544, 569, 570
PspOMI	GGGCCC	1 cut(s)	567
PspPI	GGNCC	3 cut(s)	487, 567, 568
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	805
RsaI	GTAC	2 cut(s)	375, 765
RsaNI	GTAC	2 cut(s)	374, 764
RseI	CAYNNNNRTG	2 cut(s)	111, 830
SatI	GCNGC	3 cut(s)	25, 55, 592
Sau3AI	GATC	4 cut(s)	295, 645, 741, 805
Sau96I	GGNCC	3 cut(s)	487, 567, 568
SchI	GAGTC	3 cut(s)	90, 433, 708
ScrFI	CCNGG	4 cut(s)	146, 414, 573, 731
SduI	GDGCHC	4 cut(s)	104, 571, 789, 841
SetI	ASST	8 cut(s)	160, 255, 379, 481, 529, 607, 655, 682
SfaNI	GCATC	4 cut(s)	158, 499, 559, 571
SmiMI	CAYNNNNRTG	2 cut(s)	111, 830
Sse9I	AATT	2 cut(s)	269, 435
SsiI	CCGC	8 cut(s)	25, 54, 291, 512, 540, 591, 674, 704
SspMI	CTAG	1 cut(s)	842
StyD4I	CCNGG	4 cut(s)	144, 412, 571, 729
TaaI	ACNGT	4 cut(s)	312, 335, 409, 757
TaiI	ACGT	2 cut(s)	255, 379
TaqI	TCGA	1 cut(s)	228
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	2 cut(s)	269, 435
TauI	GCSGC	3 cut(s)	27, 57, 594
TscAI	CASTG	4 cut(s)	306, 328, 370, 819
TseFI	GTSAC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	731
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	4 cut(s)	306, 328, 370, 819
Van91I	CCANNNNNTGG	1 cut(s)	440
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	2 cut(s)	186, 793
XmnI	GAANNNNTTC	1 cut(s)	722
XspI	CTAG	1 cut(s)	842
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.