Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005383

Physical Location & Seq

Genomic Coordinates Reverse (-)

28399582 .. 28410264

Gene Structure 10683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0163200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAGAATGTCCATATCCAGATTAAGCGTATACTGTTTGTTTCTGCACCTCTTCATCCTTGGGATCACGGCTATCAGGAAGGATGTGGGCTTTCTTCAGAAGCAGTTTTGCAGAAATACAGTCCAAGGAAGATACTTACTGTCTGATGATAATGGCCATGTCTGTGATGCGCTGTCAGTAAATCCTCAGTCTCGCTGCTGCCCTGAAAAGGGAGAAAAGTTCTCTTGTCATGGTTGCAACGTTGTCTCAGAGTGCTGTAATTCTTATGAGTATTGCGTTTCATGTTGTCTAGATCCTTCAAGGATAATAAAGGACCAAGTACTGGAAGTGAAGATTGCCAAGCCAGCTTCTGCAGGGAAATATCCAAGTGTTTTTGATTTCTGTGCTGGAAGGTGCCGGCATAATTCTGAGAGTGTGGTTCACGAAAATGCTTACCTTAGTGATTTCCATCACTGTTTTTCTCTGCCTTCAAATTCTTCAGCTGCAAATTATACGTTTTTAGAAGCCAGATTGAATGGCATTAATGTTCTTGTTGGAAGGCAAGGTGAATCCTGCGACTTGGTTTGCAAGTCAAAGGGACAGTCATGTGTTCCAAATAAGCTTTTGGTACTTAATCAGTGTGACATTATCCAGAAATATATGAGCTGCAAGGGAACTTGCCTGGCCAGTATTGGATCAGATCAACCTGCCGAAGTTGTTGATGACGCTCCTGAACATTTGAATCCTGGAGCATGCTTGTATACCCAAACACAATCCATGCTTTCTTGTTATGGTTCACATCAGCATACAAGGAGGCTTTGCCCTTGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

270

Amino Acids

29.81

Weight (kDa)

7.71

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRING1	PF10218	33 - 153	1e-36	SREBP regulating gene protein
Glyco_transf_18	PF15024	171 - 269	3.6e-06	Glycosyltransferase family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55310
fragaria_vesca	FvH4_4g16730 FvH4_4g16730
malus_domestica	MD00G1109500.v1.1 MD13G1176900.v1.1 MD16G1178600.v1.1
prunus_persica	Prupe.1G146000_v2.0.a1 Prupe.1G146000_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1
pyrus_communis	pycom10g21080 pycom13g15260 pycom16g15010
rosa_chinensis	RchiOBHm_Chr4g0420301
rosa_laevigata	RLG00000003998 RLG00000007777 RLG00000007780
rosa_multiflora	Rmu_sc0001767.1_g000005
rosa_roxburghii	Rroxscaffold_5G00362940
rosa_rugosa	Rorug04G0163000 Rorug04G0163100 Rorug04G0163200
rosa_samantha	Rh4AG224100 Rh4BG227100 Rh4CG238200
rosa_wichuraiana	Rw4G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	393
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccI	GTMKAC	2 cut(s)	30, 740
AclI	AACGTT	1 cut(s)	240
AclWI	GGATC	3 cut(s)	71, 287, 682
AcoI	YGGCCR	2 cut(s)	154, 663
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	2 cut(s)	80, 462
AfaI	GTAC	2 cut(s)	321, 609
AfiI	CCNNNNNNNGG	3 cut(s)	208, 209, 322
AgsI	TTSAA	4 cut(s)	300, 471, 514, 721
AjnI	CCWGG	2 cut(s)	660, 724
AluBI	AGCT	4 cut(s)	347, 482, 601, 645
AluI	AGCT	4 cut(s)	347, 482, 601, 645
Alw26I	GTCTC	2 cut(s)	195, 250
AlwI	GGATC	3 cut(s)	71, 287, 682
AlwNI	CAGNNNCTG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	154, 663
ApeKI	GCWGC	4 cut(s)	195, 198, 482, 645
ApoI	RAATTY	1 cut(s)	472
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
AseI	ATTAAT	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	313
BalI	TGGCCA	2 cut(s)	156, 665
BanI	GGYRCC	1 cut(s)	393
BbvI	GCAGC	4 cut(s)	182, 185, 469, 632
BccI	CCATC	1 cut(s)	456
BceAI	ACGGC	1 cut(s)	84
BciT130I	CCWGG	2 cut(s)	662, 726
BcoDI	GTCTC	2 cut(s)	195, 250
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	4 cut(s)	196, 199, 483, 646
BlsI	GCNGC	4 cut(s)	197, 200, 484, 647
BmcAI	AGTACT	1 cut(s)	321
Bme1390I	CCNGG	2 cut(s)	662, 726
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	2 cut(s)	662, 726
BmsI	GCATC	1 cut(s)	157
BpmI	CTGGAG	1 cut(s)	747
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	58, 124
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 209, 322
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	2 cut(s)	327, 666
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	662, 726
BseDI	CCNNGG	2 cut(s)	58, 124
BseGI	GGATG	2 cut(s)	54, 88
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	3 cut(s)	208, 209, 322
BseMII	CTCAG	3 cut(s)	200, 261, 399
BseNI	ACTGG	2 cut(s)	327, 666
BseXI	GCAGC	4 cut(s)	182, 185, 469, 632
BsgI	GTGCAG	1 cut(s)	29
BshFI	GGCC	2 cut(s)	156, 665
BshNI	GGYRCC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	3 cut(s)	208, 209, 322
BsmAI	GTCTC	2 cut(s)	195, 250
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	2 cut(s)	156, 665
Bsp143I	GATC	4 cut(s)	63, 292, 674, 679
BspANI	GGCC	2 cut(s)	156, 665
BspCNI	CTCAG	3 cut(s)	199, 260, 400
BspLI	GGNNCC	1 cut(s)	395
BspMAI	CTGCAG	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	3 cut(s)	71, 287, 682
BspT107I	GGYRCC	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	327, 666
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	2 cut(s)	58, 124
BssMI	GATC	4 cut(s)	63, 292, 674, 679
BssNAI	GTATAC	2 cut(s)	31, 741
BssT1I	CCWWGG	2 cut(s)	58, 124
Bst1107I	GTATAC	2 cut(s)	31, 741
Bst2UI	CCWGG	2 cut(s)	662, 726
Bst4CI	ACNGT	5 cut(s)	35, 121, 141, 455, 582
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	345, 398, 733
BstDEI	CTNAG	4 cut(s)	186, 247, 408, 437
BstF5I	GGATG	2 cut(s)	54, 88
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	4 cut(s)	66, 295, 677, 682
BstMAI	GTCTC	2 cut(s)	195, 250
BstMBI	GATC	4 cut(s)	63, 292, 674, 679
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	2 cut(s)	662, 726
BstNSI	RCATGY	1 cut(s)	735
BstSCI	CCNGG	2 cut(s)	660, 724
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	4 cut(s)	182, 185, 469, 632
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BstZ17I	GTATAC	2 cut(s)	31, 741
BsuRI	GGCC	2 cut(s)	156, 665
BtsCI	GGATG	2 cut(s)	54, 88
BtsIMutI	CAGTG	2 cut(s)	451, 623
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	3 cut(s)	345, 398, 733
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	2 cut(s)	320, 608
CviAII	CATG	6 cut(s)	158, 230, 282, 585, 732, 757
CviQI	GTAC	2 cut(s)	320, 608
DdeI	CTNAG	4 cut(s)	186, 247, 408, 437
DpnI	GATC	4 cut(s)	65, 294, 676, 681
DpnII	GATC	4 cut(s)	63, 292, 674, 679
EaeI	YGGCCR	2 cut(s)	154, 663
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	58, 124
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	80, 462
EcoRII	CCWGG	2 cut(s)	660, 724
EcoT14I	CCWWGG	2 cut(s)	58, 124
ErhI	CCWWGG	2 cut(s)	58, 124
FaeI	CATG	6 cut(s)	161, 233, 285, 588, 735, 760
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	6 cut(s)	157, 229, 281, 584, 731, 756
FblI	GTMKAC	2 cut(s)	30, 740
Fnu4HI	GCNGC	4 cut(s)	196, 199, 483, 646
FokI	GGATG	2 cut(s)	41, 95
Fsp4HI	GCNGC	4 cut(s)	196, 199, 483, 646
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	4 cut(s)	196, 199, 483, 646
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	2 cut(s)	156, 665
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	1 cut(s)	713
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	6 cut(s)	161, 233, 285, 588, 735, 760
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	2 cut(s)	548, 721
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	1 cut(s)	557
Hpy166II	GTNNAC	4 cut(s)	31, 421, 741, 776
Hpy188I	TCNGA	5 cut(s)	99, 145, 250, 409, 679
Hpy188III	TCNNGA	6 cut(s)	18, 76, 290, 422, 631, 710
Hpy8I	GTNNAC	4 cut(s)	31, 421, 741, 776
HpyAV	CCTTC	5 cut(s)	73, 306, 384, 477, 531
HpyCH4III	ACNGT	5 cut(s)	35, 121, 141, 455, 582
HpyCH4IV	ACGT	2 cut(s)	240, 494
HpyCH4V	TGCA	8 cut(s)	46, 111, 237, 353, 485, 567, 648, 809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	4 cut(s)	186, 247, 408, 437
HpySE526I	ACGT	2 cut(s)	240, 494
Hsp92II	CATG	6 cut(s)	161, 233, 285, 588, 735, 760
HspAI	GCGC	1 cut(s)	170
KroI	GCCGGC	1 cut(s)	396
KroNI	GCCGGC	1 cut(s)	398
Kzo9I	GATC	4 cut(s)	63, 292, 674, 679
LmnI	GCTCC	2 cut(s)	712, 728
Lsp1109I	GCAGC	4 cut(s)	182, 185, 469, 632
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	2 cut(s)	240, 494
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	4 cut(s)	65, 294, 676, 681
MboI	GATC	4 cut(s)	63, 292, 674, 679
MboII	GAAGA	5 cut(s)	43, 86, 141, 343, 468
MflI	RGATCY	1 cut(s)	292
MlsI	TGGCCA	2 cut(s)	156, 665
MluCI	AATT	4 cut(s)	259, 403, 472, 487
MluNI	TGGCCA	2 cut(s)	156, 665
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	3 cut(s)	59, 195, 786
Mox20I	TGGCCA	2 cut(s)	156, 665
MroNI	GCCGGC	1 cut(s)	396
MscI	TGGCCA	2 cut(s)	156, 665
MseI	TTAA	3 cut(s)	23, 522, 612
MslI	CAYNNNNRTG	2 cut(s)	162, 426
Msp20I	TGGCCA	2 cut(s)	156, 665
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	2 cut(s)	662, 726
MvaI	CCWGG	2 cut(s)	662, 726
MwoI	GCNNNNNNNGC	1 cut(s)	344
NaeI	GCCGGC	1 cut(s)	398
NdeII	GATC	4 cut(s)	63, 292, 674, 679
NgoMIV	GCCGGC	1 cut(s)	396
NlaIII	CATG	6 cut(s)	161, 233, 285, 588, 735, 760
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	1 cut(s)	735
PaeI	GCATGC	1 cut(s)	735
PdiI	GCCGGC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	548, 721
PflMI	CCANNNNNTGG	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	4 cut(s)	197, 200, 484, 647
PshBI	ATTAAT	1 cut(s)	522
Psp1406I	AACGTT	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	660, 724
PspGI	CCWGG	2 cut(s)	660, 724
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	321, 609
RsaNI	GTAC	2 cut(s)	320, 608
RseI	CAYNNNNRTG	2 cut(s)	162, 426
SaqAI	TTAA	3 cut(s)	23, 522, 612
SatI	GCNGC	4 cut(s)	196, 199, 483, 646
Sau3AI	GATC	4 cut(s)	63, 292, 674, 679
Sau96I	GGNCC	1 cut(s)	313
ScaI	AGTACT	1 cut(s)	321
ScrFI	CCNGG	2 cut(s)	662, 726
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	2 cut(s)	162, 426
SphI	GCATGC	1 cut(s)	735
Sse9I	AATT	4 cut(s)	259, 403, 472, 487
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	660, 724
StyI	CCWWGG	2 cut(s)	58, 124
TaaI	ACNGT	5 cut(s)	35, 121, 141, 455, 582
TaiI	ACGT	2 cut(s)	243, 497
TasI	AATT	4 cut(s)	259, 403, 472, 487
TatI	WGTACW	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	548, 721
Tru1I	TTAA	3 cut(s)	23, 522, 612
Tru9I	TTAA	3 cut(s)	23, 522, 612
TscAI	CASTG	2 cut(s)	458, 623
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	4 cut(s)	195, 198, 482, 645
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	2 cut(s)	43, 270
TspRI	CASTG	2 cut(s)	458, 623
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	313
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	472
XbaI	TCTAGA	1 cut(s)	289
XceI	RCATGY	1 cut(s)	735
XmiI	GTMKAC	2 cut(s)	30, 740
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.