Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005383

Physical Location & Seq

Genomic Coordinates Forward (+)

45979733 .. 45987733

Gene Structure 8001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2520 bp

ATGGCTTATCAGAATAATATTAATCCAAATCTATCCGAAGATGACGAGGAACCTTTAGTTTTCAAACGGTCTGCAGCATCTAAACAAAATCAGTCAAACACAGACACAAAGAAATTATCGTCTCAGAGGTATGATGGACAACCACGAAGAGTCTCTGACGTACACTCTTCCAATGGTGTAAACTCTAGTGTTCAAAAGGGTAAGATGGCTCCATCTACAAAGGCGTCACCAGGGAAATCTCCCACAGCAATCCCAAAAGAGTTATCAGAACAAAACAAGGCGATCTCTATTAAAGAGGAAAATATTCCTATTGAACACCCTGCTGAAGACAACAGTGATTCTGACGATGAAAAACCGATAAATTCCAGATTGAAGGCTAAAATAAACAATGTCAAAAAGGAAGATTCAGATGATGAAGATGATAAACCCTTATCGACAAGGGTTAATAAGTCCAATGTGGGAACCTCAGGCTGTAAGCCAAGTGACGCTAAAGAAAGGAAGCCATTGGTTCAGAAGAATGGTTCAAGCACAATAGATAAAGGGAAAAGCTCTTCTTTGGTGTCAGGTAAGAGGCCTCTAGATAAGGCGAATCATGCTGAGCAGTCTGCAATTAAAAAGCCAAAAATTGCAGATTCTTCAACATCTATAAAGAGCAAGCAGGTGTCGGCGAAAACAGAGCTGAAGGCAGATGATGATGACATGACACTTTCCCAGAGAATGAAGAAAGCCACATCTGCTAATAAATCATCTCTGACGAAGAAAACTGTAACTAAAGTCAGTTCATCCTCAATCCAGAAAAAGATCCAGAAAGGCAAAAAAACAGATAAGTTTTCAAAGTATTCTAAGTCAACAAGACAAGGACCTAGCTCTAATGATGGGCAGAAAAAATGGACTACTTTAGAGCACAATGGTGTCATTTTCCCACCTCCTTACAAGCCTCACGGGGTAAAGATGCTTTACAATGGCAAGCCAGTGAACTTGACTCCTGAACAAGAGGAGGTTGCAACAATGTATGCAGTGATGATAGATACAGAATATGTGCAGAAAAAAACTTTCAGAGACAACTTCTGGAATGATTGGCGTAAGTTGCTTGGGAAGAACCATGTAATTCAGAAATTGGATGCTTGTGATTTCAAACCAATATACGACTGGTATCAGAAAGAAAAGGAGAAGAAGAAACAAATGAGTACAGAAGAGAAGAAAGCGGTCAAGGAAGAGAAATTGAAACAAGAGGAGAAGTATATGTGGGCTGTTGTTGATGGTGTAAAAGAGAAGGTTGGAAACTTCAGAGTTGAACCACCTGGATTATTCCGAGGCCGTGGCGAGCATCCGAAGTCAGGAAAGCTGAAGAGGCGGATTAGTCCAAGTGAAGTTACAATAAATATAGGAAAGGATGCCGAGGTTCCCGAATGCCCCATTCCGGGTGAAAGGTGGAAAGAAGTAAGGCATGACAATACTGTTACATGGTTGGCTTTCTGGAATGATCCAATCAATCCAAAGGAGTTCAAATATGTATTTCTTGCAGCCAGTAGTGCCTTGAAGGGGCAAAGCGACAAGGAGAAATATGAGAAAGCAAGGAAGTTAAAGGACTACATAGGAGATATCAGGGCTGCATACACCAGGGATTTTACAAGTAGAGATCCTGCAAAGCGGCAAATAGCTGTTGCTACATATCTCATTGACAAACTTGCTCTGAGGGCTGGAAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGAGAACGTAAAAGCAATTCCCCCCAACTCGTTGGAGTTTAACTTCCTTGGTAAAGATTCCATCCGATATGAAAATACTGTTGAAGTAGAACCTGCTGTTTACAAGGAAATAAAAAAGTTTCAGGAAGGGAAAAAGGACAGTGATGATCTCTTTGACAAGTTAGATACCAGTAAATTGAATGCACATCTAAAGGAACTGATGCCTGGTCTTACTGCAAAAGTGTTCCGTACATACAATGCATCTATCACATTGGATAATGAATTGTACCAGGAAACTGCAGAAGGAGATGTATTGAAGAAAAAAGTTTTTTATGATACAGCAAACAAGAAGGTTGCTATTATCTGTAATCATCAGCGGGCTGTGTCAAAGTCTCATGAATCACAAATGGACAAGCTAAAGGAAAAGCTTAGTGACCTTCAGAGTGTTTTAAAAGAGCTAAAGACAGATTTAGACAGGGCAAGAAATGGAAAGCCCCCACTGAAAGATGCTGATGGAAAGCAGAAGAGAAATTTGACCCCGGAAGCATTACAGAAGAAGATAGCTGATGCCAATAAAAAGATTGATAAACTAAAACTGGATATGCAAACCAAAGACGACATGAAAACAATTGCATTGGGAACATCAAAAATCAACTATCTTGATCCTAGAATCACCGTTGCATGGTGCAAACGACATGAAGTCCCCATTGAGAAGATATTCCAGAAGGCTCTCCTGGCAAAGTTTGCTTGGGCAATGGATGTCGATCCTGACTTCAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

839

Amino Acids

94.89

Weight (kDa)

9.39

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topoisom_I_N	PF02919	295 - 507	3.7e-95	Eukaryotic DNA topoisomerase I, DNA binding fragment
Topoisom_I	PF01028	510 - 735	6.7e-96	Eukaryotic DNA topoisomerase I, catalytic core
Topo_C_assoc	PF14370	770 - 839	3.6e-35	C-terminal topoisomerase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005383)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55310
fragaria_vesca	FvH4_4g16730 FvH4_4g16730
malus_domestica	MD00G1109500.v1.1 MD13G1176900.v1.1 MD16G1178600.v1.1
prunus_persica	Prupe.1G146000_v2.0.a1 Prupe.1G146000_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1 Prupe.8G003200_v2.0.a1
pyrus_communis	pycom10g21080 pycom13g15260 pycom16g15010
rosa_chinensis	RchiOBHm_Chr4g0420301
rosa_laevigata	RLG00000003998 RLG00000007777 RLG00000007780
rosa_multiflora	Rmu_sc0001767.1_g000005
rosa_roxburghii	Rroxscaffold_5G00362940
rosa_rugosa	Rorug04G0163000 Rorug04G0163100 Rorug04G0163200
rosa_samantha	Rh4AG224100 Rh4BG227100 Rh4CG238200
rosa_wichuraiana	Rw4G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	649
Acc36I	ACCTGC	2 cut(s)	649, 1858
AciI	CCGC	4 cut(s)	1205, 1354, 1651, 2113
AclWI	GGATC	5 cut(s)	796, 1478, 1634, 2393, 2495
AcsI	RAATTY	2 cut(s)	361, 2266
AcuI	CTGAAG	6 cut(s)	345, 701, 1270, 1367, 2159, 2494
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	4 cut(s)	162, 1189, 1987, 2024
AfiI	CCNNNNNNNGG	5 cut(s)	1337, 1420, 1421, 1542, 2418
AhdI	GACNNNNNGTC	1 cut(s)	2435
AjnI	CCWGG	6 cut(s)	229, 1300, 1619, 1960, 2025, 2469
AleI	CACNNNNGTG	1 cut(s)	909
Alw21I	GWGCWC	1 cut(s)	906
Alw26I	GTCTC	4 cut(s)	126, 157, 1053, 2133
AlwI	GGATC	5 cut(s)	796, 1478, 1634, 2393, 2495
AlwNI	CAGNNNCTG	1 cut(s)	2517
AoxI	GGCC	2 cut(s)	572, 1315
ApeKI	GCWGC	4 cut(s)	74, 1523, 1610, 1743
ApoI	RAATTY	2 cut(s)	361, 2266
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	2 cut(s)	303, 2453
AspS9I	GGNCC	1 cut(s)	860
AsuC2I	CCSGG	2 cut(s)	1422, 2276
AsuHPI	GGTGA	3 cut(s)	219, 1436, 2401
AvaII	GGWCC	1 cut(s)	860
AxyI	CCTNAGG	1 cut(s)	466
BbsI	GAAGAC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	906
BbvI	GCAGC	4 cut(s)	86, 1535, 1597, 1730
BccI	CCATC	7 cut(s)	128, 199, 220, 869, 1253, 1826, 2243
BceAI	ACGGC	1 cut(s)	1302
BciT130I	CCWGG	6 cut(s)	231, 1302, 1621, 1962, 2027, 2471
BcnI	CCSGG	2 cut(s)	1422, 2276
BcoDI	GTCTC	4 cut(s)	126, 157, 1053, 2133
BfaI	CTAG	4 cut(s)	186, 578, 864, 2403
BfmI	CTRYAG	2 cut(s)	72, 2034
BfuAI	ACCTGC	2 cut(s)	649, 1858
BisI	GCNGC	5 cut(s)	75, 1524, 1611, 1652, 1744
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	5 cut(s)	76, 1525, 1612, 1653, 1745
Bme1390I	CCNGG	8 cut(s)	231, 1302, 1422, 1621, 1962, 2027, 2276, 2471
Bme18I	GGWCC	1 cut(s)	860
BmeRI	GACNNNNNGTC	1 cut(s)	2435
BmgT120I	GGNCC	1 cut(s)	860
BmiI	GGNNCC	4 cut(s)	51, 210, 463, 1404
BmrFI	CCNGG	8 cut(s)	231, 1302, 1422, 1621, 1962, 2027, 2276, 2471
BmsI	GCATC	9 cut(s)	86, 942, 1111, 1336, 1384, 1947, 2006, 2233, 2293
BpiI	GAAGAC	1 cut(s)	333
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuMI	CCSGG	2 cut(s)	1422, 2276
BsaBI	GATNNNNATC	1 cut(s)	2499
BsaHI	GRCGYC	1 cut(s)	224
BsaJI	CCNNGG	7 cut(s)	230, 1312, 1318, 1398, 1620, 1804, 2274
Bsc4I	CCNNNNNNNGG	5 cut(s)	1337, 1420, 1421, 1542, 2418
Bse1I	ACTGG	5 cut(s)	971, 1154, 1527, 1926, 2337
Bse21I	CCTNAGG	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	2496
Bse8I	GATNNNNATC	1 cut(s)	2499
BseBI	CCWGG	6 cut(s)	231, 1302, 1621, 1962, 2027, 2471
BseDI	CCNNGG	7 cut(s)	230, 1312, 1318, 1398, 1620, 1804, 2274
BseGI	GGATG	7 cut(s)	782, 1126, 1327, 1399, 1720, 1818, 2500
BseJI	GATNNNNATC	1 cut(s)	2499
BseLI	CCNNNNNNNGG	5 cut(s)	1337, 1420, 1421, 1542, 2418
BseMI	GCAATG	1 cut(s)	2496
BseMII	CTCAG	4 cut(s)	137, 480, 588, 1685
BseNI	ACTGG	5 cut(s)	971, 1154, 1527, 1926, 2337
BseRI	GAGGAG	2 cut(s)	1010, 1247
BseXI	GCAGC	4 cut(s)	86, 1535, 1597, 1730
BsgI	GTGCAG	2 cut(s)	1061, 1729
BshFI	GGCC	2 cut(s)	574, 1317
BsiHKAI	GWGCWC	1 cut(s)	906
BsiSI	CCGG	2 cut(s)	1421, 2276
BslFI	GGGAC	1 cut(s)	2423
BslI	CCNNNNNNNGG	5 cut(s)	1337, 1420, 1421, 1542, 2418
BsmAI	GTCTC	4 cut(s)	126, 157, 1053, 2133
BsmBI	CGTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	2423
BsmI	GAATGC	2 cut(s)	1415, 1942
BsnI	GGCC	2 cut(s)	574, 1317
Bsp1286I	GDGCHC	1 cut(s)	906
Bsp143I	GATC	7 cut(s)	282, 801, 1483, 1639, 1903, 2398, 2500
Bsp1720I	GCTNAGC	1 cut(s)	597
BspACI	CCGC	4 cut(s)	1205, 1354, 1651, 2113
BspANI	GGCC	2 cut(s)	574, 1317
BspCNI	CTCAG	4 cut(s)	136, 479, 589, 1686
BspHI	TCATGA	1 cut(s)	2131
BspLI	GGNNCC	4 cut(s)	51, 210, 463, 1404
BspMAI	CTGCAG	2 cut(s)	76, 2038
BspMI	ACCTGC	2 cut(s)	649, 1858
BspPI	GGATC	5 cut(s)	796, 1478, 1634, 2393, 2495
BspQI	GCTCTTC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	2496
BsrI	ACTGG	5 cut(s)	971, 1154, 1527, 1926, 2337
BssECI	CCNNGG	7 cut(s)	230, 1312, 1318, 1398, 1620, 1804, 2274
BssMI	GATC	7 cut(s)	282, 801, 1483, 1639, 1903, 2398, 2500
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	1804
Bst2UI	CCWGG	6 cut(s)	231, 1302, 1621, 1962, 2027, 2471
Bst4CI	ACNGT	8 cut(s)	69, 335, 766, 1459, 1735, 1837, 1898, 2413
Bst6I	CTCTTC	7 cut(s)	142, 172, 556, 1188, 1209, 1343, 2255
BstACI	GRCGYC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	2480
BstC8I	GCNNGC	4 cut(s)	656, 968, 1325, 2115
BstDEI	CTNAG	6 cut(s)	123, 466, 597, 843, 1694, 2165
BstDSI	CCRYGG	1 cut(s)	1318
BstF5I	GGATG	7 cut(s)	782, 1126, 1327, 1399, 1720, 1818, 2500
BstKTI	GATC	7 cut(s)	285, 804, 1486, 1642, 1906, 2401, 2503
BstMAI	GTCTC	4 cut(s)	126, 157, 1053, 2133
BstMBI	GATC	7 cut(s)	282, 801, 1483, 1639, 1903, 2398, 2500
BstMWI	GCNNNNNNNGC	8 cut(s)	593, 734, 1087, 1351, 1532, 1697, 2471, 2480
BstNI	CCWGG	6 cut(s)	231, 1302, 1621, 1962, 2027, 2471
BstSCI	CCNGG	8 cut(s)	229, 1300, 1420, 1619, 1960, 2025, 2274, 2469
BstSFI	CTRYAG	2 cut(s)	72, 2034
BstV1I	GCAGC	4 cut(s)	86, 1535, 1597, 1730
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	2 cut(s)	801, 1639
BstXI	CCANNNNNNTGG	1 cut(s)	1789
BstYI	RGATCY	2 cut(s)	801, 1639
Bsu36I	CCTNAGG	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	574, 1317
BtgI	CCRYGG	1 cut(s)	1318
BtsCI	GGATG	7 cut(s)	782, 1126, 1327, 1399, 1720, 1818, 2500
BtsI	GCAGTG	1 cut(s)	1023
BtsIMutI	CAGTG	5 cut(s)	340, 978, 1023, 1903, 2234
BveI	ACCTGC	2 cut(s)	649, 1858
Cac8I	GCNNGC	4 cut(s)	656, 968, 1325, 2115
CaiI	CAGNNNCTG	1 cut(s)	2517
CciI	TCATGA	1 cut(s)	2131
Cfr13I	GGNCC	1 cut(s)	860
CseI	GACGC	2 cut(s)	213, 494
Csp6I	GTAC	4 cut(s)	161, 1188, 1986, 2023
CviAII	CATG	9 cut(s)	593, 700, 1103, 1448, 1464, 2132, 2356, 2418, 2432
CviQI	GTAC	4 cut(s)	161, 1188, 1986, 2023
DdeI	CTNAG	6 cut(s)	123, 466, 597, 843, 1694, 2165
DpnI	GATC	7 cut(s)	284, 803, 1485, 1641, 1905, 2400, 2502
DpnII	GATC	7 cut(s)	282, 801, 1483, 1639, 1903, 2398, 2500
DraI	TTTAAA	1 cut(s)	2187
DriI	GACNNNNNGTC	1 cut(s)	2435
Eam1104I	CTCTTC	7 cut(s)	142, 172, 556, 1188, 1209, 1343, 2255
Eam1105I	GACNNNNNGTC	1 cut(s)	2435
EarI	CTCTTC	7 cut(s)	142, 172, 556, 1188, 1209, 1343, 2255
EciI	GGCGGA	1 cut(s)	1369
Eco130I	CCWWGG	1 cut(s)	1804
Eco147I	AGGCCT	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	1603
Eco47I	GGWCC	1 cut(s)	860
Eco57I	CTGAAG	6 cut(s)	345, 701, 1270, 1367, 2159, 2494
Eco81I	CCTNAGG	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRII	CCWGG	6 cut(s)	229, 1300, 1619, 1960, 2025, 2469
EcoRV	GATATC	1 cut(s)	1603
EcoT14I	CCWWGG	1 cut(s)	1804
EcoT22I	ATGCAT	1 cut(s)	1999
ErhI	CCWWGG	1 cut(s)	1804
Esp3I	CGTCTC	1 cut(s)	126
FaeI	CATG	9 cut(s)	596, 703, 1106, 1451, 1467, 2135, 2359, 2421, 2435
FalI	AAGNNNNNCTT	2 cut(s)	538, 570
FaqI	GGGAC	1 cut(s)	2423
FatI	CATG	9 cut(s)	592, 699, 1102, 1447, 1463, 2131, 2355, 2417, 2431
FauI	CCCGC	1 cut(s)	2106
Fnu4HI	GCNGC	5 cut(s)	75, 1524, 1611, 1652, 1744
FokI	GGATG	7 cut(s)	769, 1133, 1314, 1406, 1727, 1805, 2507
Fsp4HI	GCNGC	5 cut(s)	75, 1524, 1611, 1652, 1744
FspBI	CTAG	4 cut(s)	186, 578, 864, 2403
GluI	GCNGC	5 cut(s)	75, 1524, 1611, 1652, 1744
HaeIII	GGCC	2 cut(s)	574, 1317
HapII	CCGG	2 cut(s)	1421, 2276
HgaI	GACGC	2 cut(s)	213, 494
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	9 cut(s)	596, 703, 1106, 1451, 1467, 2135, 2359, 2421, 2435
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HindIII	AAGCTT	1 cut(s)	2162
HpaII	CCGG	2 cut(s)	1421, 2276
HphI	GGTGA	3 cut(s)	219, 1436, 2401
Hpy166II	GTNNAC	5 cut(s)	163, 181, 849, 976, 1858
Hpy8I	GTNNAC	5 cut(s)	163, 181, 849, 976, 1858
HpyCH4III	ACNGT	8 cut(s)	69, 335, 766, 1459, 1735, 1837, 1898, 2413
HpyCH4IV	ACGT	2 cut(s)	159, 1764
HpyF10VI	GCNNNNNNNGC	8 cut(s)	593, 734, 1087, 1351, 1532, 1697, 2471, 2480
HpyF3I	CTNAG	6 cut(s)	123, 466, 597, 843, 1694, 2165
HpySE526I	ACGT	2 cut(s)	159, 1764
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	9 cut(s)	596, 703, 1106, 1451, 1467, 2135, 2359, 2421, 2435
Kzo9I	GATC	7 cut(s)	282, 801, 1483, 1639, 1903, 2398, 2500
LguI	GCTCTTC	1 cut(s)	556
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	4 cut(s)	86, 1535, 1597, 1730
LweI	GCATC	9 cut(s)	86, 942, 1111, 1336, 1384, 1947, 2006, 2233, 2293
MaeI	CTAG	4 cut(s)	186, 578, 864, 2403
MaeII	ACGT	2 cut(s)	159, 1764
MaeIII	GTNAC	6 cut(s)	225, 482, 766, 1372, 1459, 2168
MalI	GATC	7 cut(s)	284, 803, 1485, 1641, 1905, 2400, 2502
MboI	GATC	7 cut(s)	282, 801, 1483, 1639, 1903, 2398, 2500
MfeI	CAATTG	1 cut(s)	2364
MflI	RGATCY	2 cut(s)	801, 1639
MhlI	GDGCHC	1 cut(s)	906
MlyI	GAGTC	2 cut(s)	159, 976
MmeI	TCCRAC	2 cut(s)	1258, 1770
Mph1103I	ATGCAT	1 cut(s)	1999
MroXI	GAANNNNTTC	2 cut(s)	303, 2453
MseI	TTAA	8 cut(s)	21, 291, 444, 612, 1583, 1751, 1797, 2186
MslI	CAYNNNNRTG	1 cut(s)	909
MspA1I	CMGCKG	1 cut(s)	2113
MspI	CCGG	2 cut(s)	1421, 2276
MspR9I	CCNGG	8 cut(s)	231, 1302, 1422, 1621, 1962, 2027, 2276, 2471
MunI	CAATTG	1 cut(s)	2364
Mva1269I	GAATGC	2 cut(s)	1415, 1942
MvaI	CCWGG	6 cut(s)	231, 1302, 1621, 1962, 2027, 2471
MwoI	GCNNNNNNNGC	8 cut(s)	593, 734, 1087, 1351, 1532, 1697, 2471, 2480
NciI	CCSGG	2 cut(s)	1422, 2276
NdeII	GATC	7 cut(s)	282, 801, 1483, 1639, 1903, 2398, 2500
NlaIII	CATG	9 cut(s)	596, 703, 1106, 1451, 1467, 2135, 2359, 2421, 2435
NlaIV	GGNNCC	4 cut(s)	51, 210, 463, 1404
NmeAIII	GCCGAG	1 cut(s)	1423
NmuCI	GTSAC	3 cut(s)	225, 482, 2168
NsiI	ATGCAT	1 cut(s)	1999
OliI	CACNNNNGTG	1 cut(s)	909
PagI	TCATGA	1 cut(s)	2131
PaqCI	CACCTGC	1 cut(s)	649
PceI	AGGCCT	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	556
PctI	GAATGC	2 cut(s)	1415, 1942
PdmI	GAANNNNTTC	2 cut(s)	303, 2453
PfeI	GAWTC	8 cut(s)	338, 404, 589, 632, 1814, 2135, 2406, 2514
PkrI	GCNGC	5 cut(s)	76, 1525, 1612, 1653, 1745
PleI	GAGTC	2 cut(s)	158, 976
PpsI	GAGTC	2 cut(s)	158, 976
PpuMI	RGGWCCY	1 cut(s)	860
PshBI	ATTAAT	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	860
Psp6I	CCWGG	6 cut(s)	229, 1300, 1619, 1960, 2025, 2469
PspGI	CCWGG	6 cut(s)	229, 1300, 1619, 1960, 2025, 2469
PspN4I	GGNNCC	4 cut(s)	51, 210, 463, 1404
PspPI	GGNCC	1 cut(s)	860
PspPPI	RGGWCCY	1 cut(s)	860
PstI	CTGCAG	2 cut(s)	76, 2038
PstNI	CAGNNNCTG	1 cut(s)	2517
PsuI	RGATCY	2 cut(s)	801, 1639
RsaI	GTAC	4 cut(s)	162, 1189, 1987, 2024
RsaNI	GTAC	4 cut(s)	161, 1188, 1986, 2023
RseI	CAYNNNNRTG	1 cut(s)	909
SapI	GCTCTTC	1 cut(s)	556
SaqAI	TTAA	8 cut(s)	21, 291, 444, 612, 1583, 1751, 1797, 2186
SatI	GCNGC	5 cut(s)	75, 1524, 1611, 1652, 1744
Sau3AI	GATC	7 cut(s)	282, 801, 1483, 1639, 1903, 2398, 2500
Sau96I	GGNCC	1 cut(s)	860
SchI	GAGTC	2 cut(s)	159, 976
ScrFI	CCNGG	8 cut(s)	231, 1302, 1422, 1621, 1962, 2027, 2276, 2471
SduI	GDGCHC	1 cut(s)	906
SfaNI	GCATC	9 cut(s)	86, 942, 1111, 1336, 1384, 1947, 2006, 2233, 2293
SfcI	CTRYAG	2 cut(s)	72, 2034
SinI	GGWCC	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	909
SseBI	AGGCCT	1 cut(s)	574
SsiI	CCGC	4 cut(s)	1205, 1354, 1651, 2113
SspI	AATATT	2 cut(s)	19, 304
SspMI	CTAG	4 cut(s)	186, 578, 864, 2403
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	8 cut(s)	229, 1300, 1420, 1619, 1960, 2025, 2274, 2469
StyI	CCWWGG	1 cut(s)	1804
TaaI	ACNGT	8 cut(s)	69, 335, 766, 1459, 1735, 1837, 1898, 2413
TaiI	ACGT	2 cut(s)	162, 1767
TaqI	TCGA	2 cut(s)	434, 2499
TatI	WGTACW	1 cut(s)	1187
TauI	GCSGC	1 cut(s)	1654
TfiI	GAWTC	8 cut(s)	338, 404, 589, 632, 1814, 2135, 2406, 2514
Tru1I	TTAA	8 cut(s)	21, 291, 444, 612, 1583, 1751, 1797, 2186
Tru9I	TTAA	8 cut(s)	21, 291, 444, 612, 1583, 1751, 1797, 2186
TscAI	CASTG	5 cut(s)	340, 978, 1023, 1903, 2241
TseFI	GTSAC	3 cut(s)	225, 482, 2168
TseI	GCWGC	4 cut(s)	74, 1523, 1610, 1743
Tsp45I	GTSAC	3 cut(s)	225, 482, 2168
TspGWI	ACGGA	1 cut(s)	1973
TspRI	CASTG	5 cut(s)	340, 978, 1023, 1903, 2241
VpaK11BI	GGWCC	1 cut(s)	860
VspI	ATTAAT	1 cut(s)	21
XapI	RAATTY	2 cut(s)	361, 2266
XbaI	TCTAGA	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1146
XmnI	GAANNNNTTC	2 cut(s)	303, 2453
XspI	CTAG	4 cut(s)	186, 578, 864, 2403
Zsp2I	ATGCAT	1 cut(s)	1999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.