Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006847

Physical Location & Seq

Genomic Coordinates Reverse (-)

10575045 .. 10576214

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGAGTTTCCGTACAGAAAGCTCCTCTTCTCTCTCTCCCTACTTTCTCTCTCTACCATTTCCGCCCTCTCTCGCTCCTCCTTCTCCCCCATAGACAGCTACCTCGTCGACTGCGGCTCCACCGCGGAATCCACCGTCGACAACCGCCGCTTCGTTCCCGACTCGTCCAAGCCCGACTCCTCCCTGTCCTCCTCAACTCGCTCCATCTCGCTCAGAAATGAAAACCCAGTTCCCAATTCGCCCCAAATCTACAGCACCGCCAGGGCTTTCAGGCGCCCGTCCAAGTACGAGTTCCAGATCCGCGACGCGGGGACCCACATGGTACGCCTCCATTTCCAGACCTTTGATTCTTTGAAATTGGATTGGAATGATGCTCAATTTCATGTTTTGGTCAATGGGTTTGTGGCTTTGACCGACTTTAGAGCTGCAAAAATCCCCATGGTTATGGAGTTTTTGATCTGGGTCGATACCAAAAAGCTTGTAATTGAATTTGTTCCTGCTAAAAAATCGAACTTTGCGTTTGTGAATGCGATTGAGGTGATTTCTGCGCCTAAGGATCTTGTTGCTGATACAGCAAAGTTTGTGAGTGATGACAAATCTGAGAATTTTAACGGGTTAATTAAGCAAGTGCTTCAGGTTGTGTATAGGGTTAACGTGGGAGGTTCGAAAGTGACGCCGTTTAATGATTCTCTGTGGAGGACTTGGGTTACTGATGATGAGTATTTGGAATCGGATTCCGGGTCGGAAAGGGTGTATTTTGGTGGTCGGATTAATTATCAGGATGGAGGGGCTAGCAGGGAAGTTGGTCCTGATAATGTGTATAATACTGCCCGGCTGATTCATAGTTCGAATGCTTCAATTCCGAATGTCAATATGACATGGGTTTTTCCTGCTGTTGGAGGATATAAATATCTTGTTCGGTTGCATTTTTGTGACATTGCTAGCATTTCGATTGGATTGCTGTATTTCAATGTTTATGTGAATGGGAAATTGGCATATGAGAATTTGGATTTGTCTATGGCAACGAATTATATGTTGGCTTCTCCATTCTATGCGGATTTTGTGGTTGATGGAGAGGAATCGGGTGTTTTGTCCGTAAGTGCAGGACCTTCGAATATGAGTATGCCTTATGCAATTGATGGGATTTTGAATGGGATTGATCGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

390

Amino Acids

43.34

Weight (kDa)

5.48

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	35 - 140	2.8e-06	Malectin domain
Malectin_like	PF12819	36 - 386	1.8e-24	Malectin-like domain
Malectin	PF11721	213 - 342	9.1e-08	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00300
fragaria_vesca	FvH4_7g14970
malus_domestica	MD01G1068300.v1.1
prunus_persica	Prupe.2G174400_v2.0.a1
pyrus_communis	pycom01g09750 pycom07g13040
rosa_chinensis	RchiOBHm_Chr1g0357011
rosa_laevigata	RLG00000028061 RLG00000028064
rosa_multiflora	Rmu_sc0000166.1_g000033 Rmu_sc0000166.1_g000037 Rmu_sc0003936.1_g000020 Rmu_sc0004595.1_g000016 Rmu_sc0004595.1_g000017 Rmu_sc0004595.1_g000021
rosa_roxburghii	Rroxscaffold_4G00299130
rosa_rugosa	Rorug01G0252700 Rorug01G0252800
rosa_samantha	Rh1AG267200 Rh1BG234700 Rh1BG235000 Rh1CG250600 Rh1CG251000 Rh1CG251200 Rh1DG262100 Rh1DG262400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	108, 138
AccII	CGCG	3 cut(s)	125, 303, 308
AclWI	GGATC	2 cut(s)	292, 564
AcsI	RAATTY	3 cut(s)	488, 604, 1003
AcuI	CTGAAG	1 cut(s)	617
AcyI	GRCGYC	2 cut(s)	274, 674
AfaI	GTAC	3 cut(s)	14, 287, 324
AfiI	CCNNNNNNNGG	2 cut(s)	307, 896
AgsI	TTSAA	5 cut(s)	355, 488, 858, 970, 1150
AjnI	CCWGG	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	6 cut(s)	275, 307, 974, 1006, 1019, 1051
AluBI	AGCT	4 cut(s)	22, 99, 425, 478
AluI	AGCT	4 cut(s)	22, 99, 425, 478
AlwI	GGATC	2 cut(s)	292, 564
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	3 cut(s)	488, 604, 1003
AseI	ATTAAT	1 cut(s)	771
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	2 cut(s)	276, 550
AspS9I	GGNCC	3 cut(s)	312, 806, 1106
AsuC2I	CCSGG	2 cut(s)	739, 832
AsuHPI	GGTGA	1 cut(s)	550
AsuII	TTCGAA	3 cut(s)	665, 848, 1112
AsuNHI	GCTAGC	2 cut(s)	791, 941
AvaII	GGWCC	3 cut(s)	312, 806, 1106
AxyI	CCTNAGG	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	4 cut(s)	212, 776, 1064, 1133
BceAI	ACGGC	1 cut(s)	661
BcgI	CGANNNNNNTGC	4 cut(s)	940, 974, 1092, 1126
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	2 cut(s)	739, 832
BfaI	CTAG	2 cut(s)	792, 942
BfmI	CTRYAG	1 cut(s)	250
BfoI	RGCGCY	1 cut(s)	277
BisI	GCNGC	3 cut(s)	115, 148, 426
BlsI	GCNGC	3 cut(s)	116, 149, 427
Bme1390I	CCNGG	3 cut(s)	262, 739, 832
Bme18I	GGWCC	3 cut(s)	312, 806, 1106
BmgT120I	GGNCC	3 cut(s)	312, 806, 1106
BmiI	GGNNCC	4 cut(s)	118, 275, 313, 314
BmrFI	CCNGG	3 cut(s)	262, 739, 832
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	361
BmtI	GCTAGC	2 cut(s)	795, 945
BmuI	ACTGGG	1 cut(s)	221
Bpu14I	TTCGAA	3 cut(s)	665, 848, 1112
BpuMI	CCSGG	2 cut(s)	739, 832
Bsa29I	ATCGAT	1 cut(s)	1162
BsaHI	GRCGYC	2 cut(s)	274, 674
BsaJI	CCNNGG	3 cut(s)	123, 261, 438
BsaXI	ACNNNNNCTCC	3 cut(s)	26, 101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 896
Bse1I	ACTGG	1 cut(s)	227
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	936
BseBI	CCWGG	1 cut(s)	262
BseCI	ATCGAT	1 cut(s)	1162
BseDI	CCNNGG	3 cut(s)	123, 261, 438
BseGI	GGATG	1 cut(s)	787
BseLI	CCNNNNNNNGG	2 cut(s)	307, 896
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	2 cut(s)	226, 591
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	4 cut(s)	14, 67, 169, 181
BseXI	GCAGC	1 cut(s)	412
BsgI	GTGCAG	1 cut(s)	1122
Bsh1236I	CGCG	3 cut(s)	125, 303, 308
BshNI	GGYRCC	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	1162
BsiSI	CCGG	2 cut(s)	738, 832
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	307, 896
BsmFI	GGGAC	1 cut(s)	325
BsmI	GAATGC	2 cut(s)	532, 856
Bsp119I	TTCGAA	3 cut(s)	665, 848, 1112
Bsp143I	GATC	5 cut(s)	297, 456, 556, 1159, 1163
Bsp19I	CCATGG	1 cut(s)	438
BspCNI	CTCAG	2 cut(s)	225, 592
BspDI	ATCGAT	1 cut(s)	1162
BspFNI	CGCG	3 cut(s)	125, 303, 308
BspHI	TCATGA	1 cut(s)	1166
BspLI	GGNNCC	4 cut(s)	118, 275, 313, 314
BspOI	GCTAGC	2 cut(s)	795, 945
BspPI	GGATC	2 cut(s)	292, 564
BspT104I	TTCGAA	3 cut(s)	665, 848, 1112
BspT107I	GGYRCC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	936
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	3 cut(s)	123, 261, 438
BssMI	GATC	5 cut(s)	297, 456, 556, 1159, 1163
BssNI	GRCGYC	2 cut(s)	274, 674
BssT1I	CCWWGG	1 cut(s)	438
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	2 cut(s)	274, 674
BstBI	TTCGAA	3 cut(s)	665, 848, 1112
BstC8I	GCNNGC	2 cut(s)	793, 943
BstDEI	CTNAG	3 cut(s)	212, 552, 600
BstDSI	CCRYGG	2 cut(s)	123, 438
BstF5I	GGATG	1 cut(s)	787
BstFNI	CGCG	3 cut(s)	125, 303, 308
BstH2I	RGCGCY	1 cut(s)	277
BstHHI	GCGC	2 cut(s)	276, 550
BstKTI	GATC	5 cut(s)	300, 459, 559, 1162, 1166
BstMBI	GATC	5 cut(s)	297, 456, 556, 1159, 1163
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	260, 737, 830
BstSFI	CTRYAG	1 cut(s)	250
BstUI	CGCG	3 cut(s)	125, 303, 308
BstV1I	GCAGC	1 cut(s)	412
BstX2I	RGATCY	2 cut(s)	297, 556
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	2 cut(s)	297, 556
Bsu15I	ATCGAT	1 cut(s)	1162
Bsu36I	CCTNAGG	1 cut(s)	552
BsuTUI	ATCGAT	1 cut(s)	1162
BtgI	CCRYGG	2 cut(s)	123, 438
BtsCI	GGATG	1 cut(s)	787
Cac8I	GCNNGC	2 cut(s)	793, 943
CciI	TCATGA	1 cut(s)	1166
CfoI	GCGC	2 cut(s)	276, 550
Cfr13I	GGNCC	3 cut(s)	312, 806, 1106
Cfr42I	CCGCGG	1 cut(s)	126
ClaI	ATCGAT	1 cut(s)	1162
CseI	GACGC	2 cut(s)	314, 682
Csp6I	GTAC	3 cut(s)	13, 286, 323
CviAII	CATG	5 cut(s)	319, 383, 439, 879, 1167
CviQI	GTAC	3 cut(s)	13, 286, 323
DdeI	CTNAG	3 cut(s)	212, 552, 600
DinI	GGCGCC	1 cut(s)	275
DpnI	GATC	5 cut(s)	299, 458, 558, 1161, 1165
DpnII	GATC	5 cut(s)	297, 456, 556, 1159, 1163
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	438
Eco47I	GGWCC	3 cut(s)	312, 806, 1106
Eco57I	CTGAAG	1 cut(s)	617
Eco81I	CCTNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	2 cut(s)	312, 1106
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	438
EgeI	GGCGCC	1 cut(s)	275
EheI	GGCGCC	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	5 cut(s)	322, 386, 442, 882, 1170
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	5 cut(s)	318, 382, 438, 878, 1166
FauI	CCCGC	1 cut(s)	301
FauNDI	CATATG	1 cut(s)	997
FblI	GTMKAC	2 cut(s)	108, 138
Fnu4HI	GCNGC	3 cut(s)	115, 148, 426
FokI	GGATG	1 cut(s)	794
Fsp4HI	GCNGC	3 cut(s)	115, 148, 426
FspBI	CTAG	2 cut(s)	792, 942
GlaI	GCGC	2 cut(s)	275, 549
GluI	GCNGC	3 cut(s)	115, 148, 426
HaeII	RGCGCY	1 cut(s)	277
HapII	CCGG	2 cut(s)	738, 832
HgaI	GACGC	2 cut(s)	314, 682
HhaI	GCGC	2 cut(s)	276, 550
Hin1I	GRCGYC	2 cut(s)	274, 674
Hin1II	CATG	5 cut(s)	322, 386, 442, 882, 1170
Hin6I	GCGC	2 cut(s)	274, 548
HinP1I	GCGC	2 cut(s)	274, 548
HincII	GTYRAC	3 cut(s)	109, 139, 652
HindII	GTYRAC	3 cut(s)	109, 139, 652
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	9 cut(s)	128, 161, 176, 347, 686, 728, 734, 838, 1079
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	2 cut(s)	738, 832
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	3 cut(s)	109, 139, 652
Hpy188I	TCNGA	6 cut(s)	215, 601, 733, 745, 768, 864
Hpy188III	TCNNGA	6 cut(s)	158, 295, 337, 779, 809, 1167
Hpy8I	GTNNAC	3 cut(s)	109, 139, 652
Hpy99I	CGWCG	3 cut(s)	110, 140, 308
HpyAV	CCTTC	2 cut(s)	91, 1119
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	654
HpyCH4V	TGCA	4 cut(s)	428, 925, 1103, 1133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	3 cut(s)	212, 552, 600
HpySE526I	ACGT	1 cut(s)	654
Hsp92I	GRCGYC	2 cut(s)	274, 674
Hsp92II	CATG	5 cut(s)	322, 386, 442, 882, 1170
HspAI	GCGC	2 cut(s)	274, 548
KasI	GGCGCC	1 cut(s)	273
KflI	GGGWCCC	1 cut(s)	312
KspAI	GTTAAC	1 cut(s)	652
KspI	CCGCGG	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	297, 456, 556, 1159, 1163
LmnI	GCTCC	4 cut(s)	27, 80, 122, 206
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	2 cut(s)	792, 942
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	3 cut(s)	670, 706, 932
MalI	GATC	5 cut(s)	299, 458, 558, 1161, 1165
MboI	GATC	5 cut(s)	297, 456, 556, 1159, 1163
MboII	GAAGA	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	1134
MflI	RGATCY	2 cut(s)	297, 556
Mly113I	GGCGCC	1 cut(s)	274
MlyI	GAGTC	2 cut(s)	155, 170
MmeI	TCCRAC	3 cut(s)	723, 746, 877
MroXI	GAANNNNTTC	1 cut(s)	492
MseI	TTAA	6 cut(s)	609, 617, 621, 651, 681, 771
MslI	CAYNNNNRTG	2 cut(s)	443, 930
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	2 cut(s)	738, 832
MspR9I	CCNGG	3 cut(s)	262, 739, 832
MunI	CAATTG	1 cut(s)	1134
Mva1269I	GAATGC	2 cut(s)	532, 856
MvaI	CCWGG	1 cut(s)	262
MvnI	CGCG	3 cut(s)	125, 303, 308
MwoI	GCNNNNNNNGC	1 cut(s)	572
NarI	GGCGCC	1 cut(s)	274
NciI	CCSGG	2 cut(s)	739, 832
NcoI	CCATGG	1 cut(s)	438
NdeI	CATATG	1 cut(s)	997
NdeII	GATC	5 cut(s)	297, 456, 556, 1159, 1163
NheI	GCTAGC	2 cut(s)	791, 941
NlaIII	CATG	5 cut(s)	322, 386, 442, 882, 1170
NlaIV	GGNNCC	4 cut(s)	118, 275, 313, 314
NmuCI	GTSAC	2 cut(s)	670, 932
NspV	TTCGAA	3 cut(s)	665, 848, 1112
PacI	TTAATTAA	1 cut(s)	621
PagI	TCATGA	1 cut(s)	1166
PcsI	WCGNNNNNNNCGW	1 cut(s)	515
PctI	GAATGC	2 cut(s)	532, 856
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	7 cut(s)	128, 347, 686, 728, 734, 838, 1079
PkrI	GCNGC	3 cut(s)	116, 149, 427
PleI	GAGTC	2 cut(s)	155, 170
PluTI	GGCGCC	1 cut(s)	277
PpsI	GAGTC	2 cut(s)	155, 170
PpuMI	RGGWCCY	2 cut(s)	312, 1106
PshBI	ATTAAT	1 cut(s)	771
Psp5II	RGGWCCY	2 cut(s)	312, 1106
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	4 cut(s)	118, 275, 313, 314
PspPI	GGNCC	3 cut(s)	312, 806, 1106
PspPPI	RGGWCCY	2 cut(s)	312, 1106
PsuI	RGATCY	2 cut(s)	297, 556
RsaI	GTAC	3 cut(s)	14, 287, 324
RsaNI	GTAC	3 cut(s)	13, 286, 323
RseI	CAYNNNNRTG	2 cut(s)	443, 930
SacII	CCGCGG	1 cut(s)	126
SalI	GTCGAC	2 cut(s)	107, 137
SaqAI	TTAA	6 cut(s)	609, 617, 621, 651, 681, 771
SatI	GCNGC	3 cut(s)	115, 148, 426
Sau3AI	GATC	5 cut(s)	297, 456, 556, 1159, 1163
Sau96I	GGNCC	3 cut(s)	312, 806, 1106
SchI	GAGTC	2 cut(s)	155, 170
ScrFI	CCNGG	3 cut(s)	262, 739, 832
SfaNI	GCATC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	250
SfoI	GGCGCC	1 cut(s)	275
Sfr303I	CCGCGG	1 cut(s)	126
SfuI	TTCGAA	3 cut(s)	665, 848, 1112
SgrBI	CCGCGG	1 cut(s)	126
SinI	GGWCC	3 cut(s)	312, 806, 1106
SmiMI	CAYNNNNRTG	2 cut(s)	443, 930
SspDI	GGCGCC	1 cut(s)	273
SspMI	CTAG	2 cut(s)	792, 942
StyD4I	CCNGG	3 cut(s)	260, 737, 830
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	9 cut(s)	108, 138, 465, 509, 665, 848, 950, 1112, 1162
TaqII	GACCGA	1 cut(s)	428
TauI	GCSGC	2 cut(s)	117, 150
TfiI	GAWTC	7 cut(s)	128, 347, 686, 728, 734, 838, 1079
Tru1I	TTAA	6 cut(s)	609, 617, 621, 651, 681, 771
Tru9I	TTAA	6 cut(s)	609, 617, 621, 651, 681, 771
TseFI	GTSAC	2 cut(s)	670, 932
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	2 cut(s)	670, 932
TspDTI	ATGAA	3 cut(s)	234, 371, 830
TspGWI	ACGGA	1 cut(s)	1084
VpaK11BI	GGWCC	3 cut(s)	312, 806, 1106
VspI	ATTAAT	1 cut(s)	771
XapI	RAATTY	3 cut(s)	488, 604, 1003
XmiI	GTMKAC	2 cut(s)	108, 138
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	2 cut(s)	792, 942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.