Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004595.1

Orthogroup ID

OG0006847

Physical Location & Seq

Genomic Coordinates Reverse (-)

78124 .. 78399

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004595.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atggcgtttccctacacaaacctcacgctctttctctctctactttctctctgtaccctctccctctccctctccctctcctccttctctgccgtcgacaactacctcttcgactgctgttccaccgtggactcctccgtcgacgatggccgccgcttcgttccggactcgtccacttcatctcgctcaatttcactccgaaaccaaaaccctaatcccaattcgccccaaatttaccagaccgctagggttttccggcggccgtccaagtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

91

Amino Acids

10.17

Weight (kDa)

8.59

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00300
fragaria_vesca	FvH4_7g14970
malus_domestica	MD01G1068300.v1.1
prunus_persica	Prupe.2G174400_v2.0.a1
pyrus_communis	pycom01g09750 pycom07g13040
rosa_chinensis	RchiOBHm_Chr1g0357011
rosa_laevigata	RLG00000028061 RLG00000028064
rosa_multiflora	Rmu_sc0000166.1_g000033 Rmu_sc0000166.1_g000037 Rmu_sc0003936.1_g000020 Rmu_sc0004595.1_g000016 Rmu_sc0004595.1_g000017 Rmu_sc0004595.1_g000021
rosa_roxburghii	Rroxscaffold_4G00299130
rosa_rugosa	Rorug01G0252700 Rorug01G0252800
rosa_samantha	Rh1AG267200 Rh1BG234700 Rh1BG235000 Rh1CG250600 Rh1CG251000 Rh1CG251200 Rh1DG262100 Rh1DG262400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccI	GTMKAC	2 cut(s)	96, 141
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	4 cut(s)	151, 154, 243, 259
AcoI	YGGCCR	2 cut(s)	148, 260
AcsI	RAATTY	1 cut(s)	231
AfaI	GTAC	2 cut(s)	55, 272
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	2 cut(s)	148, 260
ApoI	RAATTY	1 cut(s)	231
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	2 cut(s)	77, 247
BfaI	CTAG	2 cut(s)	246, 274
BisI	GCNGC	3 cut(s)	151, 154, 260
BlsI	GCNGC	3 cut(s)	152, 155, 261
BmcAI	AGTACT	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	163
BseAI	TCCGGA	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	70, 124
BseX3I	CGGCCG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	150, 262
BsiEI	CGRYCG	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	164, 256
BsnI	GGCC	2 cut(s)	150, 262
Bsp13I	TCCGGA	1 cut(s)	163
BspACI	CCGC	4 cut(s)	151, 154, 243, 259
BspANI	GGCC	2 cut(s)	150, 262
BspEI	TCCGGA	1 cut(s)	163
BssECI	CCNNGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	126
BstMCI	CGRYCG	1 cut(s)	263
BstZI	CGGCCG	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	150, 262
BtgI	CCRYGG	1 cut(s)	126
Csp6I	GTAC	2 cut(s)	54, 271
CviJI	RGCY	2 cut(s)	150, 262
CviKI_1	RGCY	2 cut(s)	150, 262
CviQI	GTAC	2 cut(s)	54, 271
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
EaeI	YGGCCR	2 cut(s)	148, 260
EagI	CGGCCG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
EclXI	CGGCCG	1 cut(s)	260
Eco52I	CGGCCG	1 cut(s)	260
FblI	GTMKAC	2 cut(s)	96, 141
Fnu4HI	GCNGC	3 cut(s)	151, 154, 260
Fsp4HI	GCNGC	3 cut(s)	151, 154, 260
FspBI	CTAG	2 cut(s)	246, 274
GluI	GCNGC	3 cut(s)	151, 154, 260
HaeIII	GGCC	2 cut(s)	150, 262
HapII	CCGG	2 cut(s)	164, 256
HincII	GTYRAC	2 cut(s)	97, 142
HindII	GTYRAC	2 cut(s)	97, 142
HinfI	GANTC	2 cut(s)	131, 167
HpaII	CCGG	2 cut(s)	164, 256
Hpy166II	GTNNAC	4 cut(s)	97, 130, 142, 174
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	4 cut(s)	97, 130, 142, 174
Hpy99I	CGWCG	3 cut(s)	98, 143, 146
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	127
Kpn2I	TCCGGA	1 cut(s)	163
LpnPI	CCDG	3 cut(s)	177, 251, 269
MaeI	CTAG	2 cut(s)	246, 274
MboII	GAAGA	1 cut(s)	100
MluCI	AATT	3 cut(s)	189, 220, 231
MlyI	GAGTC	2 cut(s)	125, 161
MnlI	CCTC	8 cut(s)	32, 68, 74, 80, 86, 91, 116, 145
MroI	TCCGGA	1 cut(s)	163
MspI	CCGG	2 cut(s)	164, 256
PkrI	GCNGC	3 cut(s)	152, 155, 261
PleI	GAGTC	2 cut(s)	125, 161
PpsI	GAGTC	2 cut(s)	125, 161
RsaI	GTAC	2 cut(s)	55, 272
RsaNI	GTAC	2 cut(s)	54, 271
SalI	GTCGAC	2 cut(s)	95, 140
SatI	GCNGC	3 cut(s)	151, 154, 260
ScaI	AGTACT	1 cut(s)	272
SchI	GAGTC	2 cut(s)	125, 161
SetI	ASST	2 cut(s)	24, 108
SgeI	CNNG	8 cut(s)	37, 139, 176, 181, 195, 250, 258, 268
SgrDI	CGTCGACG	1 cut(s)	140
Sse9I	AATT	3 cut(s)	189, 220, 231
SsiI	CCGC	4 cut(s)	151, 154, 243, 259
SspMI	CTAG	2 cut(s)	246, 274
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	96, 111, 141
TasI	AATT	3 cut(s)	189, 220, 231
TatI	WGTACW	1 cut(s)	270
TauI	GCSGC	3 cut(s)	153, 156, 262
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	127
XapI	RAATTY	1 cut(s)	231
XmiI	GTMKAC	2 cut(s)	96, 141
XspI	CTAG	2 cut(s)	246, 274
ZrmI	AGTACT	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.