pycom07g13040

receptor-like protein kinase At5g24010

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
14580521 .. 14581901
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g13040.1

Sequence Viewer

Length: 1326 bp
ATGGAATCCGGCACAGCAGACCCACAGCCCCCGAAACTCAAGTCTCGCTCTTCCTCTTCCGCCATTTCTGAATTCTCCAGACTCCCTCCCATGGAGTTTCCGTACAGAAAGCTCCTTTTCTCTCTCTCGCTATTTTCTCTCTCTACCCTTTCCGCCCTGTCTCACTCCTACTTCGCTCCCATAGACATCTACCTCGTCGACTGCGGCTCCACCGCGGAATCCACCGTCGACAATCGCCGCTTCGTTCCCGACTCGTCCAACCCTGATTCGCCCCTCTCCTCCTCAACTCGCTCCATCCCGCTCAGAAATGAAAACCCAGTTCCAAATTCGCCCCAAATCTACAGCACGGCCAGGGCTTTCCGGCGGCCGTCGAAATACGAGTTCCAGATCCGCGACCCAGGGACCCATTTGGTACGCCTCCATTTCCAGACCTTTAATTCTTTGAAATTGGATTGGAATGATGCTCAATTTCATGTTTTGGTCAATGGGTTTGTGGCTTTGACCGACTTTAGAGATACAAAAATCCCCGTTGTTATGGAGTTCTTGATCTGGGTCGATTCCAAAAAGCTTGTAATCGAATTTGTACCTGCTAAAAAATCATACTTTGCGTTTGTGAATGCGATTGAGGTGATTTCTGCACCGAAGGATCTCGTTGCTGATACAGCGAAGTTTGTGAGTGATGAGAAAGTTGAGGGTTTTAATGGGCTAATTAAGCAAGCGCTTCAGGTTGTGTATAGGGTTAATGTGGGAGGTTCTAAAGTCACCCCGTTTAATGATACCCTGTGGAGGACTTGGGTTACTGATGATGAGTATTTGGAATCGGATTCTGGGTCGAAAAGGGTGTATTTTGGTGGCCGGATTAAGTATCAGGGTGGAGGGCCTAGCAGGGAAGTTGGTCCCGATAATGTGTATAATACGGCCCGGGTGATTCATAGTGCGAATGCTTTGATTCCGCATGTCAATATGACATGGGTTTTTGCAGCCGTTGGAGGATATAAGTATCTTGTTCGGTTGCATTTTTGTGACATTGCTAGTATTTCAATTGGATTGCTGTATTTCAATGTTTATGTGAATGGGAAATTAGCATATGAGAATTTGGATTTGTCTATGGCTGCGAATTACATGTTGGCTTCTCCGTTCTATGCGGATTTTGTGGTTGATGGAGAGGATTCAGGTGTTCTGTCAGTAAGTGTAGGACCTTCGAATATGAGTGTGCCTTATGCCATCGATGGGATTTTGAATGGCATTGAAATCATGAGGTTGAATAACTCAATGGGGAGTCTTGATGGTGAGCATTGTGCCGGGTGGCCGCCTGTTTACTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

442

Amino Acids

48.99

Weight (kDa)

5.94

Isoelectric Point (pI)

35.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 66 - 420 2.8e-27 Malectin-like domain
Malectin PF11721 243 - 373 1.6e-06 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 595
AccBSI CCGCTC 1 cut(s) 301
AccI GTMKAC 2 cut(s) 198, 228
AccII CGCG 2 cut(s) 215, 393
AclWI GGATC 2 cut(s) 382, 654
AcoI YGGCCR 4 cut(s) 348, 365, 853, 1307
AcsI RAATTY 4 cut(s) 71, 325, 578, 1093
AcuI CTGAAG 1 cut(s) 707
AfaI GTAC 3 cut(s) 104, 414, 585
AfeI AGCGCT 1 cut(s) 720
AfiI CCNNNNNNNGG 3 cut(s) 91, 786, 1230
AflIII ACRYGT 1 cut(s) 1122
AgsI TTSAA 6 cut(s) 445, 1041, 1060, 1240, 1250, 1264
AjnI CCWGG 2 cut(s) 350, 397
AjuI GAANNNNNNNTTGG 2 cut(s) 1109, 1141
AluBI AGCT 2 cut(s) 112, 568
AluI AGCT 2 cut(s) 112, 568
Alw26I GTCTC 2 cut(s) 48, 165
AlwI GGATC 2 cut(s) 382, 654
Ama87I CYCGRG 1 cut(s) 921
Aor51HI AGCGCT 1 cut(s) 720
AoxI GGCC 6 cut(s) 348, 365, 853, 878, 918, 1307
ApeKI GCWGC 2 cut(s) 980, 1112
ApoI RAATTY 4 cut(s) 71, 325, 578, 1093
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspLEI GCGC 1 cut(s) 721
AspS9I GGNCC 5 cut(s) 402, 878, 896, 919, 1196
AsuC2I CCSGG 3 cut(s) 922, 923, 1303
AsuHPI GGTGA 4 cut(s) 640, 754, 937, 1301
AsuII TTCGAA 1 cut(s) 1202
AvaI CYCGRG 1 cut(s) 921
AvaII GGWCC 3 cut(s) 402, 896, 1196
BbvI GCAGC 2 cut(s) 992, 1099
BccI CCATC 5 cut(s) 302, 1154, 1223, 1232, 1280
BceAI ACGGC 4 cut(s) 352, 363, 933, 968
BciT130I CCWGG 2 cut(s) 352, 399
BcnI CCSGG 3 cut(s) 922, 923, 1303
BcoDI GTCTC 2 cut(s) 48, 165
BfaI CTAG 2 cut(s) 882, 1032
BfmI CTRYAG 1 cut(s) 340
BfoI RGCGCY 1 cut(s) 722
BfuAI ACCTGC 1 cut(s) 595
BisI GCNGC 6 cut(s) 205, 238, 365, 981, 1113, 1310
BlsI GCNGC 6 cut(s) 206, 239, 366, 982, 1114, 1311
Bme1390I CCNGG 5 cut(s) 352, 399, 922, 923, 1303
Bme18I GGWCC 3 cut(s) 402, 896, 1196
BmeT110I CYCGRG 1 cut(s) 921
BmgT120I GGNCC 5 cut(s) 402, 878, 896, 919, 1196
BmiI GGNNCC 4 cut(s) 208, 403, 404, 898
BmrFI CCNGG 5 cut(s) 352, 399, 922, 923, 1303
BmrI ACTGGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 451
BmuI ACTGGG 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 1202
BpuEI CTTGAG 1 cut(s) 23
BpuMI CCSGG 3 cut(s) 922, 923, 1303
Bsa29I ATCGAT 1 cut(s) 1227
BsaJI CCNNGG 6 cut(s) 90, 213, 351, 397, 398, 921
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 191, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 786, 1230
Bse1I ACTGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 1026
BseBI CCWGG 2 cut(s) 352, 399
BseCI ATCGAT 1 cut(s) 1227
BseDI CCNNGG 6 cut(s) 90, 213, 351, 397, 398, 921
BseGI GGATG 1 cut(s) 294
BseLI CCNNNNNNNGG 3 cut(s) 91, 786, 1230
BseMI GCAATG 1 cut(s) 1026
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 2 cut(s) 268, 271
BseX3I CGGCCG 1 cut(s) 365
BseXI GCAGC 2 cut(s) 992, 1099
BsgI GTGCAG 1 cut(s) 621
Bsh1236I CGCG 2 cut(s) 215, 393
Bsh1285I CGRYCG 1 cut(s) 368
BshFI GGCC 6 cut(s) 350, 367, 855, 880, 920, 1309
BshVI ATCGAT 1 cut(s) 1227
BsiEI CGRYCG 1 cut(s) 368
BsiHKCI CYCGRG 1 cut(s) 921
BsiSI CCGG 5 cut(s) 9, 361, 856, 922, 1302
BslFI GGGAC 2 cut(s) 415, 882
BslI CCNNNNNNNGG 3 cut(s) 91, 786, 1230
BsmAI GTCTC 2 cut(s) 48, 165
BsmFI GGGAC 2 cut(s) 415, 882
BsmI GAATGC 2 cut(s) 622, 946
BsnI GGCC 6 cut(s) 350, 367, 855, 880, 920, 1309
BsoBI CYCGRG 1 cut(s) 921
Bsp119I TTCGAA 1 cut(s) 1202
Bsp143I GATC 3 cut(s) 387, 546, 646
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 6 cut(s) 350, 367, 855, 880, 920, 1309
BspCNI CTCAG 1 cut(s) 315
BspDI ATCGAT 1 cut(s) 1227
BspFNI CGCG 2 cut(s) 215, 393
BspHI TCATGA 1 cut(s) 1254
BspLI GGNNCC 4 cut(s) 208, 403, 404, 898
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 2 cut(s) 382, 654
BspQI GCTCTTC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 1202
BsrBI CCGCTC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 1026
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 6 cut(s) 90, 213, 351, 397, 398, 921
BssMI GATC 3 cut(s) 387, 546, 646
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 2 cut(s) 352, 399
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 55, 61
BstBI TTCGAA 1 cut(s) 1202
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 1 cut(s) 302
BstDSI CCRYGG 2 cut(s) 90, 213
BstF5I GGATG 1 cut(s) 294
BstFNI CGCG 2 cut(s) 215, 393
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 1 cut(s) 721
BstKTI GATC 3 cut(s) 390, 549, 649
BstMAI GTCTC 2 cut(s) 48, 165
BstMBI GATC 3 cut(s) 387, 546, 646
BstMCI CGRYCG 1 cut(s) 368
BstMWI GCNNNNNNNGC 2 cut(s) 662, 712
BstNI CCWGG 2 cut(s) 352, 399
BstNSI RCATGY 2 cut(s) 959, 1126
BstSCI CCNGG 5 cut(s) 350, 397, 920, 921, 1301
BstSFI CTRYAG 1 cut(s) 340
BstUI CGCG 2 cut(s) 215, 393
BstV1I GCAGC 2 cut(s) 992, 1099
BstX2I RGATCY 2 cut(s) 387, 646
BstYI RGATCY 2 cut(s) 387, 646
BstZI CGGCCG 1 cut(s) 365
Bsu15I ATCGAT 1 cut(s) 1227
BsuRI GGCC 6 cut(s) 350, 367, 855, 880, 920, 1309
BsuTUI ATCGAT 1 cut(s) 1227
BtgI CCRYGG 2 cut(s) 90, 213
BtsCI GGATG 1 cut(s) 294
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 1 cut(s) 717
CciI TCATGA 1 cut(s) 1254
CfoI GCGC 1 cut(s) 721
Cfr13I GGNCC 5 cut(s) 402, 878, 896, 919, 1196
Cfr42I CCGCGG 1 cut(s) 216
Cfr9I CCCGGG 1 cut(s) 921
ClaI ATCGAT 1 cut(s) 1227
Csp6I GTAC 3 cut(s) 103, 413, 584
CviAII CATG 6 cut(s) 91, 473, 956, 969, 1123, 1255
CviQI GTAC 3 cut(s) 103, 413, 584
DdeI CTNAG 1 cut(s) 302
DpnI GATC 3 cut(s) 389, 548, 648
DpnII GATC 3 cut(s) 387, 546, 646
EaeI YGGCCR 4 cut(s) 348, 365, 853, 1307
EagI CGGCCG 1 cut(s) 365
Eam1104I CTCTTC 2 cut(s) 55, 61
EarI CTCTTC 2 cut(s) 55, 61
EciI GGCGGA 2 cut(s) 49, 142
EclXI CGGCCG 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 90
Eco47I GGWCC 3 cut(s) 402, 896, 1196
Eco47III AGCGCT 1 cut(s) 720
Eco52I CGGCCG 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 707
Eco88I CYCGRG 1 cut(s) 921
EcoO109I RGGNCCY 3 cut(s) 402, 878, 1196
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 2 cut(s) 350, 397
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 6 cut(s) 94, 476, 959, 972, 1126, 1258
FaqI GGGAC 2 cut(s) 415, 882
FatI CATG 6 cut(s) 90, 472, 955, 968, 1122, 1254
FauI CCCGC 1 cut(s) 306
FauNDI CATATG 1 cut(s) 1087
FblI GTMKAC 2 cut(s) 198, 228
Fnu4HI GCNGC 6 cut(s) 205, 238, 365, 981, 1113, 1310
FokI GGATG 1 cut(s) 281
Fsp4HI GCNGC 6 cut(s) 205, 238, 365, 981, 1113, 1310
FspBI CTAG 2 cut(s) 882, 1032
GlaI GCGC 1 cut(s) 720
GluI GCNGC 6 cut(s) 205, 238, 365, 981, 1113, 1310
GsuI CTGGAG 1 cut(s) 61
HaeII RGCGCY 1 cut(s) 722
HaeIII GGCC 6 cut(s) 350, 367, 855, 880, 920, 1309
HapII CCGG 5 cut(s) 9, 361, 856, 922, 1302
HhaI GCGC 1 cut(s) 721
Hin1II CATG 6 cut(s) 94, 476, 959, 972, 1126, 1258
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HincII GTYRAC 2 cut(s) 199, 229
HindII GTYRAC 2 cut(s) 199, 229
HindIII AAGCTT 1 cut(s) 566
HpaII CCGG 5 cut(s) 9, 361, 856, 922, 1302
HphI GGTGA 4 cut(s) 640, 754, 937, 1301
Hpy166II GTNNAC 3 cut(s) 199, 229, 1318
Hpy188I TCNGA 3 cut(s) 70, 305, 823
Hpy188III TCNNGA 8 cut(s) 78, 248, 385, 427, 544, 899, 1255, 1283
Hpy8I GTNNAC 3 cut(s) 199, 229, 1318
Hpy99I CGWCG 3 cut(s) 200, 230, 373
HpyAV CCTTC 2 cut(s) 637, 1209
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 3 cut(s) 638, 980, 1015
HpyF10VI GCNNNNNNNGC 2 cut(s) 662, 712
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 6 cut(s) 94, 476, 959, 972, 1126, 1258
HspAI GCGC 1 cut(s) 719
KflI GGGWCCC 1 cut(s) 402
KspI CCGCGG 1 cut(s) 216
Kzo9I GATC 3 cut(s) 387, 546, 646
LguI GCTCTTC 1 cut(s) 55
LmnI GCTCC 4 cut(s) 117, 181, 212, 296
Lsp1109I GCAGC 2 cut(s) 992, 1099
LweI GCATC 1 cut(s) 451
MaeI CTAG 2 cut(s) 882, 1032
MaeIII GTNAC 3 cut(s) 760, 796, 1022
MalI GATC 3 cut(s) 389, 548, 648
MbiI CCGCTC 1 cut(s) 301
MboI GATC 3 cut(s) 387, 546, 646
MboII GAAGA 2 cut(s) 42, 48
MfeI CAATTG 1 cut(s) 1041
MflI RGATCY 2 cut(s) 387, 646
MlyI GAGTC 3 cut(s) 75, 245, 1288
MmeI TCCRAC 2 cut(s) 282, 967
MseI TTAA 6 cut(s) 435, 699, 711, 741, 771, 861
MslI CAYNNNNRTG 1 cut(s) 1020
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 5 cut(s) 9, 361, 856, 922, 1302
MspR9I CCNGG 5 cut(s) 352, 399, 922, 923, 1303
MunI CAATTG 1 cut(s) 1041
Mva1269I GAATGC 2 cut(s) 622, 946
MvaI CCWGG 2 cut(s) 352, 399
MvnI CGCG 2 cut(s) 215, 393
MwoI GCNNNNNNNGC 2 cut(s) 662, 712
NciI CCSGG 3 cut(s) 922, 923, 1303
NcoI CCATGG 1 cut(s) 90
NdeI CATATG 1 cut(s) 1087
NdeII GATC 3 cut(s) 387, 546, 646
NlaIII CATG 6 cut(s) 94, 476, 959, 972, 1126, 1258
NlaIV GGNNCC 4 cut(s) 208, 403, 404, 898
NmuCI GTSAC 2 cut(s) 760, 1022
NspI RCATGY 2 cut(s) 959, 1126
NspV TTCGAA 1 cut(s) 1202
PagI TCATGA 1 cut(s) 1254
PasI CCCWGGG 1 cut(s) 398
PciI ACATGT 1 cut(s) 1122
PciSI GCTCTTC 1 cut(s) 55
PctI GAATGC 2 cut(s) 622, 946
PfeI GAWTC 9 cut(s) 5, 218, 266, 557, 818, 824, 928, 949, 1169
PkrI GCNGC 6 cut(s) 206, 239, 366, 982, 1114, 1311
PleI GAGTC 3 cut(s) 75, 245, 1287
PpsI GAGTC 3 cut(s) 75, 245, 1287
PpuMI RGGWCCY 2 cut(s) 402, 1196
PscI ACATGT 1 cut(s) 1122
Psp5II RGGWCCY 2 cut(s) 402, 1196
Psp6I CCWGG 2 cut(s) 350, 397
PspGI CCWGG 2 cut(s) 350, 397
PspN4I GGNNCC 4 cut(s) 208, 403, 404, 898
PspPI GGNCC 5 cut(s) 402, 878, 896, 919, 1196
PspPPI RGGWCCY 2 cut(s) 402, 1196
PsuI RGATCY 2 cut(s) 387, 646
RsaI GTAC 3 cut(s) 104, 414, 585
RsaNI GTAC 3 cut(s) 103, 413, 584
RseI CAYNNNNRTG 1 cut(s) 1020
SacII CCGCGG 1 cut(s) 216
SalI GTCGAC 2 cut(s) 197, 227
SapI GCTCTTC 1 cut(s) 55
SaqAI TTAA 6 cut(s) 435, 699, 711, 741, 771, 861
SatI GCNGC 6 cut(s) 205, 238, 365, 981, 1113, 1310
Sau3AI GATC 3 cut(s) 387, 546, 646
Sau96I GGNCC 5 cut(s) 402, 878, 896, 919, 1196
SchI GAGTC 3 cut(s) 75, 245, 1288
ScrFI CCNGG 5 cut(s) 352, 399, 922, 923, 1303
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 340
Sfr303I CCGCGG 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 1202
SgrBI CCGCGG 1 cut(s) 216
SinI GGWCC 3 cut(s) 402, 896, 1196
SmaI CCCGGG 1 cut(s) 923
SmiMI CAYNNNNRTG 1 cut(s) 1020
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SspMI CTAG 2 cut(s) 882, 1032
StyD4I CCNGG 5 cut(s) 350, 397, 920, 921, 1301
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 8 cut(s) 198, 228, 371, 555, 576, 833, 1202, 1227
TaqII GACCGA 1 cut(s) 518
TauI GCSGC 4 cut(s) 207, 240, 367, 1312
TfiI GAWTC 9 cut(s) 5, 218, 266, 557, 818, 824, 928, 949, 1169
Tru1I TTAA 6 cut(s) 435, 699, 711, 741, 771, 861
Tru9I TTAA 6 cut(s) 435, 699, 711, 741, 771, 861
TseFI GTSAC 2 cut(s) 760, 1022
TseI GCWGC 2 cut(s) 980, 1112
Tsp45I GTSAC 2 cut(s) 760, 1022
TspDTI ATGAA 3 cut(s) 324, 461, 920
TspGWI ACGGA 2 cut(s) 90, 1125
TspMI CCCGGG 1 cut(s) 921
VpaK11BI GGWCC 3 cut(s) 402, 896, 1196
XapI RAATTY 4 cut(s) 71, 325, 578, 1093
XceI RCATGY 2 cut(s) 959, 1126
XmaI CCCGGG 1 cut(s) 921
XmiI GTMKAC 2 cut(s) 198, 228
XspI CTAG 2 cut(s) 882, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.