Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006847

Physical Location & Seq

Genomic Coordinates Reverse (-)

51381937 .. 51383742

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG250600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTACGCCTCCATTTCCAGAGCTTCAATTCTTGTAACTTAGATTGGAATAGTGCTCAATTTCATGTCTTCGTCAATGGGTTTGTGGTTTTGAAAGTCAGCGACTTTGGATTTGGGGGTGTATTAGGTCCCATGGTTGGAGGGGCTAGCCGGGAAGTTGGTCCGGATAATGTGTACAACACTGCAAGATTGATTCGTAGACCATCGAACGCCAGCGTGCCATACGCCGTCAATGGTATATTGAATGGTATTGAGATCATGAAGTTGAATAACTCAGTTGGGAGTCTTGATGGCGAGCATTGTGCAGAGTGGGTTTTGAGGAGTTGGCCAGAGGGACATTGCAACTGTGAGAATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604 Malectin_like

Protein Analysis

119

Amino Acids

13.04

Weight (kDa)

6.02

Isoelectric Point (pI)

27.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00300
fragaria_vesca	FvH4_7g14970
malus_domestica	MD01G1068300.v1.1
prunus_persica	Prupe.2G174400_v2.0.a1
pyrus_communis	pycom01g09750 pycom07g13040
rosa_chinensis	RchiOBHm_Chr1g0357011
rosa_laevigata	RLG00000028061 RLG00000028064
rosa_multiflora	Rmu_sc0000166.1_g000033 Rmu_sc0000166.1_g000037 Rmu_sc0003936.1_g000020 Rmu_sc0004595.1_g000016 Rmu_sc0004595.1_g000017 Rmu_sc0004595.1_g000021
rosa_roxburghii	Rroxscaffold_4G00299130
rosa_rugosa	Rorug01G0252700 Rorug01G0252800
rosa_samantha	Rh1AG267200 Rh1BG234700 Rh1BG235000 Rh1CG250600 Rh1CG251000 Rh1CG251200 Rh1DG262100 Rh1DG262400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	326
AfaI	GTAC	2 cut(s)	6, 176
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	4 cut(s)	28, 94, 244, 268
AluBI	AGCT	1 cut(s)	24
AluI	AGCT	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	58
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspS9I	GGNCC	2 cut(s)	128, 161
AsuC2I	CCSGG	1 cut(s)	152
AsuNHI	GCTAGC	1 cut(s)	146
AvaII	GGWCC	2 cut(s)	128, 161
BalI	TGGCCA	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	58
BccI	CCATC	2 cut(s)	211, 284
BceAI	ACGGC	1 cut(s)	212
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	2 cut(s)	128, 161
BmgT120I	GGNCC	2 cut(s)	128, 161
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	152
BmtI	GCTAGC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	61
BpuMI	CCSGG	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	337
BseAI	TCCGGA	1 cut(s)	163
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	334
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	151, 164
BslFI	GGGAC	2 cut(s)	114, 348
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	2 cut(s)	114, 348
BsnI	GGCC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp13I	TCCGGA	1 cut(s)	163
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	255
Bsp19I	CCATGG	1 cut(s)	132
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	1 cut(s)	287
BspEI	TCCGGA	1 cut(s)	163
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	130
BspOI	GCTAGC	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	337
BsrGI	TGTACA	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	4 cut(s)	148, 214, 218, 296
BstDEI	CTNAG	2 cut(s)	40, 274
BstDSI	CCRYGG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	4 cut(s)	148, 214, 218, 296
CciI	TCATGA	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	128, 161
Csp6I	GTAC	2 cut(s)	5, 175
CviAII	CATG	3 cut(s)	65, 133, 259
CviJI	RGCY	4 cut(s)	24, 146, 150, 328
CviKI_1	RGCY	4 cut(s)	24, 146, 150, 328
CviQI	GTAC	2 cut(s)	5, 175
DdeI	CTNAG	2 cut(s)	40, 274
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
EaeI	YGGCCR	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	2 cut(s)	128, 161
EcoO109I	RGGNCCY	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	68, 136, 262
FaiI	YATR	6 cut(s)	66, 134, 223, 239, 260, 358
FaqI	GGGAC	2 cut(s)	114, 348
FatI	CATG	3 cut(s)	64, 132, 258
FblI	GTMKAC	1 cut(s)	199
FspBI	CTAG	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	2 cut(s)	151, 164
Hin1II	CATG	3 cut(s)	68, 136, 262
HinfI	GANTC	2 cut(s)	193, 283
HpaII	CCGG	2 cut(s)	151, 164
Hpy166II	GTNNAC	2 cut(s)	175, 200
Hpy188III	TCNNGA	4 cut(s)	19, 164, 259, 287
Hpy8I	GTNNAC	2 cut(s)	175, 200
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	3 cut(s)	185, 305, 342
HpyF3I	CTNAG	2 cut(s)	40, 274
Hsp92II	CATG	3 cut(s)	68, 136, 262
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	255
LpnPI	CCDG	5 cut(s)	32, 164, 177, 226, 342
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	328
MluCI	AATT	2 cut(s)	28, 59
MluNI	TGGCCA	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	20, 134, 312, 325
Mox20I	TGGCCA	1 cut(s)	328
MroI	TCCGGA	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	328
Msp20I	TGGCCA	1 cut(s)	328
MspI	CCGG	2 cut(s)	151, 164
MspR9I	CCNGG	1 cut(s)	152
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	1 cut(s)	255
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	3 cut(s)	68, 136, 262
NlaIV	GGNNCC	1 cut(s)	130
PagI	TCATGA	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	2 cut(s)	128, 161
PspPPI	RGGWCCY	1 cut(s)	128
RsaI	GTAC	2 cut(s)	6, 176
RsaNI	GTAC	2 cut(s)	5, 175
Sau3AI	GATC	1 cut(s)	255
Sau96I	GGNCC	2 cut(s)	128, 161
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	2 cut(s)	26, 130
SinI	GGWCC	2 cut(s)	128, 161
Sse9I	AATT	2 cut(s)	28, 59
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	1 cut(s)	206
TasI	AATT	2 cut(s)	28, 59
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	193
TscAI	CASTG	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	53, 275
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	2 cut(s)	128, 161
XmiI	GTMKAC	1 cut(s)	199
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.