Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006847

Physical Location & Seq

Genomic Coordinates Reverse (-)

35787028 .. 35788180

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG234700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGTTAGGGAGTACTTGATTTGGGTCGATACTGGAAAGCTTGTGATTCGATTTGTTCCTGATAAAAAGTCAAGCTTTGCGTTTGTGAATGCGATTGAGGTCGTTTCTGCACCTAAGGACCTTGTTGCTGATACTGCCGTGTATGTGAGTGATGGGAAAGTTGTGGGTTTTGATGGGTTGGCTAAGCAAGCTCTTCAAGTTGTGCATAGGGTCAATGTGGGAGGTCATAAAGTGACGCCCTTTAATGATAGTCTGTGGAGGACTTGGGTTACTGATGAGGAGTTTTTCGATTCGGGTTTCGGGTCGGAGAGGGTTTATTTTGGGGGGAGGATTAGGTATCAGGTTGGAGGGGCTAGCCGGGAAGTTGGTCCGGATAATGTGTACAACACTGCAAGATTGATTCGTAGTACGAATGCTTCGATTCCCAATGTGAATATGACATGGGTGTTTCCTGCAGTTGGTGGGTATAAGTATTTGGTTCGGATGCATTTCTGTGATTTTGCTAGTACTTCGCTTGGTTTGCTGTATTTCAATGTTTATGTGAATGGGAATTTGGCATATGAAGATTTGGATTTGTCTAAGGCTGCAAATTACATGTTGGCTTCTCCCTTCTATGCGGATTTTGTGGTTGATAGAGATGATTCGGGTTCTTTGACTGTAAGTGTAGGACCATCAAACGCTAGCGTGCCGTACGCCATTGATGGTATATTGAATGGTATTGAGATCATGAAGTTGAATAACTCAGTTGGGAGTCTTGATGGCGAGCATTGTGCAGAGTGGGTTTTGGGGAGTTGGCCAAAGGGACATGTTAGTCTCTTGGTTCCTCTAGTTGCTGCTGCTTGTGTGCTGCTAAGCTTATCTATGGTTACGCGTAGGAGGATCATGAGGAAGAAGGAATCTGTGGCATGGACGAAACTGCCTGTGGATGTTTCAGAAGTTAATGCCAAGCATGGAAATATACATCAATCGGATAAATTGGAAAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604 Malectin_like

Protein Analysis

329

Amino Acids

36.2

Weight (kDa)

6.39

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	3 - 244	3.4e-17	Malectin-like domain
Malectin	PF11721	67 - 208	1.2e-07	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00300
fragaria_vesca	FvH4_7g14970
malus_domestica	MD01G1068300.v1.1
prunus_persica	Prupe.2G174400_v2.0.a1
pyrus_communis	pycom01g09750 pycom07g13040
rosa_chinensis	RchiOBHm_Chr1g0357011
rosa_laevigata	RLG00000028061 RLG00000028064
rosa_multiflora	Rmu_sc0000166.1_g000033 Rmu_sc0000166.1_g000037 Rmu_sc0003936.1_g000020 Rmu_sc0004595.1_g000016 Rmu_sc0004595.1_g000017 Rmu_sc0004595.1_g000021
rosa_roxburghii	Rroxscaffold_4G00299130
rosa_rugosa	Rorug01G0252700 Rorug01G0252800
rosa_samantha	Rh1AG267200 Rh1BG234700 Rh1BG235000 Rh1CG250600 Rh1CG251000 Rh1CG251200 Rh1DG262100 Rh1DG262400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	810
AccII	CGCG	1 cut(s)	871
AccIII	TCCGGA	1 cut(s)	370
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	1 cut(s)	887
AcoI	YGGCCR	1 cut(s)	794
AcsI	RAATTY	1 cut(s)	550
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	5 cut(s)	14, 383, 409, 508, 692
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflIII	ACRYGT	3 cut(s)	594, 805, 869
AgsI	TTSAA	4 cut(s)	197, 532, 712, 736
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	4 cut(s)	40, 75, 191, 855
AluI	AGCT	4 cut(s)	40, 75, 191, 855
Alw26I	GTCTC	1 cut(s)	818
AlwI	GGATC	1 cut(s)	887
Aor13HI	TCCGGA	1 cut(s)	370
AoxI	GGCC	1 cut(s)	794
ApeKI	GCWGC	4 cut(s)	584, 833, 836, 847
ApoI	RAATTY	1 cut(s)	550
AspS9I	GGNCC	3 cut(s)	118, 368, 668
AsuC2I	CCSGG	1 cut(s)	359
AsuNHI	GCTAGC	2 cut(s)	353, 680
AvaII	GGWCC	3 cut(s)	118, 368, 668
AxyI	CCTNAGG	1 cut(s)	114
BaeI	ACNNNNGTAYC	2 cut(s)	123, 156
BalI	TGGCCA	1 cut(s)	796
BarI	GAAGNNNNNNTAC	2 cut(s)	400, 432
BbvI	GCAGC	4 cut(s)	571, 820, 823, 834
BccI	CCATC	5 cut(s)	146, 167, 679, 695, 752
BceAI	ACGGC	2 cut(s)	122, 673
BcgI	CGANNNNNNTGC	2 cut(s)	752, 786
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	818
BfaI	CTAG	4 cut(s)	354, 504, 681, 827
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	4 cut(s)	585, 834, 837, 848
BlpI	GCTNAGC	2 cut(s)	183, 851
BlsI	GCNGC	4 cut(s)	586, 835, 838, 849
BmcAI	AGTACT	2 cut(s)	14, 508
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	3 cut(s)	118, 368, 668
BmgT120I	GGNCC	3 cut(s)	118, 368, 668
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	474
BmtI	GCTAGC	2 cut(s)	357, 684
Bpu1102I	GCTNAGC	2 cut(s)	183, 851
BpuMI	CCSGG	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	37
Bse21I	CCTNAGG	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	370
BseGI	GGATG	2 cut(s)	489, 931
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMII	CTCAG	1 cut(s)	756
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	4 cut(s)	571, 820, 823, 834
BsgI	GTGCAG	2 cut(s)	93, 792
Bsh1236I	CGCG	1 cut(s)	871
BshFI	GGCC	1 cut(s)	796
BsiSI	CCGG	2 cut(s)	358, 371
BsiWI	CGTACG	1 cut(s)	690
BslFI	GGGAC	1 cut(s)	816
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	818
BsmFI	GGGAC	1 cut(s)	816
BsmI	GAATGC	2 cut(s)	94, 418
BsnI	GGCC	1 cut(s)	796
Bsp13I	TCCGGA	1 cut(s)	370
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	723, 879
Bsp1720I	GCTNAGC	2 cut(s)	183, 851
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	1 cut(s)	796
BspCNI	CTCAG	1 cut(s)	755
BspEI	TCCGGA	1 cut(s)	370
BspFNI	CGCG	1 cut(s)	871
BspHI	TCATGA	2 cut(s)	726, 882
BspLI	GGNNCC	1 cut(s)	822
BspMAI	CTGCAG	1 cut(s)	457
BspOI	GCTAGC	2 cut(s)	357, 684
BspPI	GGATC	1 cut(s)	887
BspQI	GCTCTTC	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	723, 879
BssNI	GRCGYC	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	236
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	5 cut(s)	189, 355, 682, 686, 764
BstDEI	CTNAG	5 cut(s)	114, 183, 579, 742, 851
BstF5I	GGATG	2 cut(s)	489, 931
BstFNI	CGCG	1 cut(s)	871
BstKTI	GATC	2 cut(s)	726, 882
BstMAI	GTCTC	1 cut(s)	818
BstMBI	GATC	2 cut(s)	723, 879
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 188, 520
BstNSI	RCATGY	2 cut(s)	598, 809
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	871
BstV1I	GCAGC	4 cut(s)	571, 820, 823, 834
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	796
BtsCI	GGATG	2 cut(s)	489, 931
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	5 cut(s)	189, 355, 682, 686, 764
CciI	TCATGA	2 cut(s)	726, 882
Cfr13I	GGNCC	3 cut(s)	118, 368, 668
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	5 cut(s)	13, 382, 408, 507, 691
CviAII	CATG	7 cut(s)	441, 595, 727, 806, 883, 906, 950
CviQI	GTAC	5 cut(s)	13, 382, 408, 507, 691
DdeI	CTNAG	5 cut(s)	114, 183, 579, 742, 851
DpnI	GATC	2 cut(s)	725, 881
DpnII	GATC	2 cut(s)	723, 879
DrdI	GACNNNNNNGTC	1 cut(s)	810
DseDI	GACNNNNNNGTC	1 cut(s)	810
EaeI	YGGCCR	1 cut(s)	794
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco47I	GGWCC	3 cut(s)	118, 368, 668
Eco81I	CCTNAGG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	489
FaeI	CATG	7 cut(s)	444, 598, 730, 809, 886, 909, 953
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	816
FatI	CATG	7 cut(s)	440, 594, 726, 805, 882, 905, 949
FauNDI	CATATG	1 cut(s)	559
Fnu4HI	GCNGC	4 cut(s)	585, 834, 837, 848
FokI	GGATG	2 cut(s)	496, 938
Fsp4HI	GCNGC	4 cut(s)	585, 834, 837, 848
FspBI	CTAG	4 cut(s)	354, 504, 681, 827
GluI	GCNGC	4 cut(s)	585, 834, 837, 848
HaeIII	GGCC	1 cut(s)	796
HapII	CCGG	2 cut(s)	358, 371
HgaI	GACGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	236
Hin1II	CATG	7 cut(s)	444, 598, 730, 809, 886, 909, 953
HindIII	AAGCTT	3 cut(s)	38, 73, 853
HinfI	GANTC	7 cut(s)	46, 290, 400, 421, 641, 751, 896
HpaII	CCGG	2 cut(s)	358, 371
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	4 cut(s)	307, 483, 934, 970
Hpy188III	TCNNGA	5 cut(s)	59, 371, 727, 755, 883
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	619, 886
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4V	TGCA	7 cut(s)	110, 205, 392, 455, 487, 587, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 188, 520
HpyF3I	CTNAG	5 cut(s)	114, 183, 579, 742, 851
Hsp92I	GRCGYC	1 cut(s)	236
Hsp92II	CATG	7 cut(s)	444, 598, 730, 809, 886, 909, 953
Kpn2I	TCCGGA	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	723, 879
LguI	GCTCTTC	1 cut(s)	198
LpnPI	CCDG	7 cut(s)	18, 72, 326, 371, 384, 465, 933
Lsp1109I	GCAGC	4 cut(s)	571, 820, 823, 834
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	4 cut(s)	354, 504, 681, 827
MaeIII	GTNAC	3 cut(s)	232, 268, 865
MalI	GATC	2 cut(s)	725, 881
MboI	GATC	2 cut(s)	723, 879
MboII	GAAGA	3 cut(s)	185, 575, 901
MlsI	TGGCCA	1 cut(s)	796
MluCI	AATT	3 cut(s)	550, 589, 974
MluI	ACGCGT	1 cut(s)	869
MluNI	TGGCCA	1 cut(s)	796
MlyI	GAGTC	1 cut(s)	760
MmeI	TCCRAC	2 cut(s)	285, 325
Mox20I	TGGCCA	1 cut(s)	796
Mph1103I	ATGCAT	1 cut(s)	489
MroI	TCCGGA	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	796
MseI	TTAA	2 cut(s)	243, 939
MslI	CAYNNNNRTG	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	796
MspI	CCGG	2 cut(s)	358, 371
MspR9I	CCNGG	1 cut(s)	359
Mva1269I	GAATGC	2 cut(s)	94, 418
MvnI	CGCG	1 cut(s)	871
MwoI	GCNNNNNNNGC	3 cut(s)	134, 188, 520
NciI	CCSGG	1 cut(s)	359
NdeI	CATATG	1 cut(s)	559
NdeII	GATC	2 cut(s)	723, 879
NheI	GCTAGC	2 cut(s)	353, 680
NlaIII	CATG	7 cut(s)	444, 598, 730, 809, 886, 909, 953
NlaIV	GGNNCC	1 cut(s)	822
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	2 cut(s)	598, 809
PagI	TCATGA	2 cut(s)	726, 882
PciI	ACATGT	2 cut(s)	594, 805
PciSI	GCTCTTC	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PctI	GAATGC	2 cut(s)	94, 418
PfeI	GAWTC	6 cut(s)	46, 290, 400, 421, 641, 896
Pfl23II	CGTACG	1 cut(s)	690
PkrI	GCNGC	4 cut(s)	586, 835, 838, 849
PleI	GAGTC	1 cut(s)	759
PpsI	GAGTC	1 cut(s)	759
PpuMI	RGGWCCY	1 cut(s)	118
PscI	ACATGT	2 cut(s)	594, 805
Psp5II	RGGWCCY	1 cut(s)	118
PspLI	CGTACG	1 cut(s)	690
PspN4I	GGNNCC	1 cut(s)	822
PspPI	GGNCC	3 cut(s)	118, 368, 668
PspPPI	RGGWCCY	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	457
RsaI	GTAC	5 cut(s)	14, 383, 409, 508, 692
RsaNI	GTAC	5 cut(s)	13, 382, 408, 507, 691
RseI	CAYNNNNRTG	1 cut(s)	492
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	243, 939
SatI	GCNGC	4 cut(s)	585, 834, 837, 848
Sau3AI	GATC	2 cut(s)	723, 879
Sau96I	GGNCC	3 cut(s)	118, 368, 668
ScaI	AGTACT	2 cut(s)	14, 508
SchI	GAGTC	1 cut(s)	760
ScrFI	CCNGG	1 cut(s)	359
SfaNI	GCATC	1 cut(s)	474
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	3 cut(s)	118, 368, 668
SmiMI	CAYNNNNRTG	1 cut(s)	492
Sse9I	AATT	3 cut(s)	550, 589, 974
SsiI	CCGC	1 cut(s)	617
SspMI	CTAG	4 cut(s)	354, 504, 681, 827
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	658
TaqI	TCGA	4 cut(s)	27, 49, 288, 419
TasI	AATT	3 cut(s)	550, 589, 974
TatI	WGTACW	3 cut(s)	12, 381, 506
TfiI	GAWTC	6 cut(s)	46, 290, 400, 421, 641, 896
Tru1I	TTAA	2 cut(s)	243, 939
Tru9I	TTAA	2 cut(s)	243, 939
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	4 cut(s)	584, 833, 836, 847
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	576, 743
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	3 cut(s)	118, 368, 668
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	2 cut(s)	598, 809
XspI	CTAG	4 cut(s)	354, 504, 681, 827
ZrmI	AGTACT	2 cut(s)	14, 508
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.