Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006847

Physical Location & Seq

Genomic Coordinates Forward (+)

18212346 .. 18214272

Gene Structure 1927 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028064

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGTACGCCTCCATTTCCAGAGCTTCAATTCTTGTAATTTCGATTGGAATAGTGCTCAATTTCATGTCTTGGTCAATGGGTTTGTGGTTTTGAAAGTCAACAACTTTGGATTTGGGGGTGTATTAGGTCCTATGATTAAGGAGTACTTGATTTGGGTCGGTACTGGAAAGCTTGTAATTCGATTTGTTCCTGATATGAAGTCAAGCTTTGCGTTTGTGAATGCGATTGAGGTCGTTTCTGCACCTAAGGACCTTGTTGCTGATACTGCCATGTATGTGAGTGATGGGAAAGTTGTGGGTTTTGATGGGTTGGCTAAGCAAGCTCTTCAAGTTGTGCATAGGGTTAATGTGGGAGGTCATAAAGTGACACCCTTTAATGATAGTCTGTGGAGGACTTGGATTACTGATGAGGAGTTTTTTGATTCGGGTTTCGGGTCGGAGAGGGTTTATTTTGGGGGGAGGATTAAGTATCAGGATGGAGGGGCTAGCCGGGAAGTTGGCCCGGATAATGTGTACAACACTGCAAGACTGATTCTTAGTACGAATGCTTCGATTCCCAATGTGAATATGACATGGGTGTTTCCTGCAGTGGGTGGGTATAAGTATTTGGTTCGGATGCATTTCTGTGATTTTGCTAGTACTTCGCTTGGTTTGCTGTATTTCAATGTTTATGTGAATGGGAATTTGGCACATGAAGATTTGGATTTGTCTAAGGCTGCAAATTACATGTTGGCTTCTCAGTTCTATGTGGATTTTGTGGTTGATGGAGATGATTCGGATTCTTTGACTGTAAGTGTAGGACCATCGAACGCTAGCGTGCCATACGCCATTGATGGTATATTGAATGGTATTGAGATCATGAAGTTGAATAACTCAGTTGGGAGTCTTGATGGTGAGCATTGTGCAGAGTGGGTTTTGAGGAGTTGGCCAAAAGGACATGTTAGTCTCTTGGTTCCTCTAGTTGCTGCTGCTTGTGTGCTGCTAAGCTTATCTATGGTTACGCGTAGGAGGATCATGAGGAAGAAGGAATCTGTGGCATGGACGAAACTGTCTGTGGATGTTTCAGAAGTTAATGCCAAGCATGGAAATATACATCAATCGGATAAATTGGAAAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

374

Amino Acids

41.13

Weight (kDa)

6.2

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	2 - 288	6.5e-18	Malectin-like domain
Malectin	PF11721	112 - 256	6.4e-08	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00300
fragaria_vesca	FvH4_7g14970
malus_domestica	MD01G1068300.v1.1
prunus_persica	Prupe.2G174400_v2.0.a1
pyrus_communis	pycom01g09750 pycom07g13040
rosa_chinensis	RchiOBHm_Chr1g0357011
rosa_laevigata	RLG00000028061 RLG00000028064
rosa_multiflora	Rmu_sc0000166.1_g000033 Rmu_sc0000166.1_g000037 Rmu_sc0003936.1_g000020 Rmu_sc0004595.1_g000016 Rmu_sc0004595.1_g000017 Rmu_sc0004595.1_g000021
rosa_roxburghii	Rroxscaffold_4G00299130
rosa_rugosa	Rorug01G0252700 Rorug01G0252800
rosa_samantha	Rh1AG267200 Rh1BG234700 Rh1BG235000 Rh1CG250600 Rh1CG251000 Rh1CG251200 Rh1DG262100 Rh1DG262400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	942, 1048
AccII	CGCG	1 cut(s)	1003
AclWI	GGATC	1 cut(s)	1019
AcoI	YGGCCR	1 cut(s)	926
AcsI	RAATTY	1 cut(s)	682
AfaI	GTAC	6 cut(s)	6, 146, 163, 515, 541, 640
AfiI	CCNNNNNNNGG	1 cut(s)	590
AflIII	ACRYGT	3 cut(s)	726, 937, 1001
AgsI	TTSAA	6 cut(s)	28, 94, 329, 664, 844, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AluBI	AGCT	5 cut(s)	24, 172, 207, 323, 987
AluI	AGCT	5 cut(s)	24, 172, 207, 323, 987
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	950
AlwI	GGATC	1 cut(s)	1019
AoxI	GGCC	2 cut(s)	499, 926
ApeKI	GCWGC	4 cut(s)	716, 965, 968, 979
ApoI	RAATTY	1 cut(s)	682
AspS9I	GGNCC	4 cut(s)	128, 250, 500, 800
AsuC2I	CCSGG	2 cut(s)	491, 503
AsuHPI	GGTGA	1 cut(s)	905
AsuNHI	GCTAGC	2 cut(s)	485, 812
AvaII	GGWCC	3 cut(s)	128, 250, 800
AxyI	CCTNAGG	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	928
BarI	GAAGNNNNNNTAC	2 cut(s)	532, 564
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	4 cut(s)	703, 952, 955, 966
BccI	CCATC	7 cut(s)	278, 299, 470, 758, 811, 827, 884
BcnI	CCSGG	2 cut(s)	491, 503
BcoDI	GTCTC	1 cut(s)	950
BfaI	CTAG	4 cut(s)	486, 636, 813, 959
BfmI	CTRYAG	1 cut(s)	585
BisI	GCNGC	4 cut(s)	717, 966, 969, 980
BlpI	GCTNAGC	2 cut(s)	315, 983
BlsI	GCNGC	4 cut(s)	718, 967, 970, 981
BmcAI	AGTACT	2 cut(s)	146, 640
Bme1390I	CCNGG	2 cut(s)	491, 503
Bme18I	GGWCC	3 cut(s)	128, 250, 800
BmgT120I	GGNCC	4 cut(s)	128, 250, 500, 800
BmiI	GGNNCC	1 cut(s)	954
BmrFI	CCNGG	2 cut(s)	491, 503
BmsI	GCATC	1 cut(s)	606
BmtI	GCTAGC	2 cut(s)	489, 816
Bpu1102I	GCTNAGC	2 cut(s)	315, 983
BpuMI	CCSGG	2 cut(s)	491, 503
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse1I	ACTGG	1 cut(s)	169
Bse21I	CCTNAGG	1 cut(s)	246
BseGI	GGATG	3 cut(s)	481, 621, 1063
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	2 cut(s)	752, 888
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	2 cut(s)	425, 934
BseXI	GCAGC	4 cut(s)	703, 952, 955, 966
BsgI	GTGCAG	2 cut(s)	225, 924
Bsh1236I	CGCG	1 cut(s)	1003
BshFI	GGCC	2 cut(s)	501, 928
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	490, 503
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	950
BsmI	GAATGC	2 cut(s)	226, 550
BsnI	GGCC	2 cut(s)	501, 928
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	2 cut(s)	855, 1011
Bsp1720I	GCTNAGC	2 cut(s)	315, 983
BspANI	GGCC	2 cut(s)	501, 928
BspCNI	CTCAG	2 cut(s)	751, 887
BspFNI	CGCG	1 cut(s)	1003
BspHI	TCATGA	2 cut(s)	858, 1014
BspLI	GGNNCC	1 cut(s)	954
BspMAI	CTGCAG	1 cut(s)	589
BspOI	GCTAGC	2 cut(s)	489, 816
BspPI	GGATC	1 cut(s)	1019
BspQI	GCTCTTC	1 cut(s)	330
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	169
BssMI	GATC	2 cut(s)	855, 1011
Bst4CI	ACNGT	2 cut(s)	790, 1050
Bst6I	CTCTTC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	4 cut(s)	321, 487, 814, 818
BstDEI	CTNAG	7 cut(s)	246, 315, 536, 711, 738, 874, 983
BstF5I	GGATG	3 cut(s)	481, 621, 1063
BstFNI	CGCG	1 cut(s)	1003
BstKTI	GATC	2 cut(s)	858, 1014
BstMAI	GTCTC	1 cut(s)	950
BstMBI	GATC	2 cut(s)	855, 1011
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 320, 652
BstNSI	RCATGY	2 cut(s)	730, 941
BstSCI	CCNGG	2 cut(s)	489, 501
BstSFI	CTRYAG	1 cut(s)	585
BstUI	CGCG	1 cut(s)	1003
BstV1I	GCAGC	4 cut(s)	703, 952, 955, 966
Bsu36I	CCTNAGG	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	501, 928
BtsCI	GGATG	3 cut(s)	481, 621, 1063
BtsI	GCAGTG	2 cut(s)	519, 594
BtsIMutI	CAGTG	2 cut(s)	519, 594
Cac8I	GCNNGC	4 cut(s)	321, 487, 814, 818
CciI	TCATGA	2 cut(s)	858, 1014
Cfr13I	GGNCC	4 cut(s)	128, 250, 500, 800
Csp6I	GTAC	6 cut(s)	5, 145, 162, 514, 540, 639
CviQI	GTAC	6 cut(s)	5, 145, 162, 514, 540, 639
DdeI	CTNAG	7 cut(s)	246, 315, 536, 711, 738, 874, 983
DpnI	GATC	2 cut(s)	857, 1013
DpnII	GATC	2 cut(s)	855, 1011
DrdI	GACNNNNNNGTC	2 cut(s)	942, 1048
DseDI	GACNNNNNNGTC	2 cut(s)	942, 1048
EaeI	YGGCCR	1 cut(s)	926
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco47I	GGWCC	3 cut(s)	128, 250, 800
Eco81I	CCTNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	2 cut(s)	128, 250
EcoT22I	ATGCAT	1 cut(s)	621
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 191, 223
Fnu4HI	GCNGC	4 cut(s)	717, 966, 969, 980
FokI	GGATG	3 cut(s)	488, 628, 1070
Fsp4HI	GCNGC	4 cut(s)	717, 966, 969, 980
FspBI	CTAG	4 cut(s)	486, 636, 813, 959
GluI	GCNGC	4 cut(s)	717, 966, 969, 980
HaeIII	GGCC	2 cut(s)	501, 928
HapII	CCGG	2 cut(s)	490, 503
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	3 cut(s)	170, 205, 985
HinfI	GANTC	7 cut(s)	422, 532, 553, 773, 779, 883, 1028
HpaII	CCGG	2 cut(s)	490, 503
HphI	GGTGA	1 cut(s)	905
Hpy166II	GTNNAC	2 cut(s)	100, 514
Hpy188I	TCNGA	5 cut(s)	439, 615, 778, 1066, 1102
Hpy188III	TCNNGA	6 cut(s)	19, 191, 473, 859, 887, 1015
Hpy8I	GTNNAC	2 cut(s)	100, 514
HpyAV	CCTTC	1 cut(s)	1018
HpyCH4III	ACNGT	2 cut(s)	790, 1050
HpyCH4V	TGCA	7 cut(s)	242, 337, 524, 587, 619, 719, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 320, 652
HpyF3I	CTNAG	7 cut(s)	246, 315, 536, 711, 738, 874, 983
Kzo9I	GATC	2 cut(s)	855, 1011
LguI	GCTCTTC	1 cut(s)	330
LpnPI	CCDG	7 cut(s)	32, 150, 204, 458, 503, 516, 597
Lsp1109I	GCAGC	4 cut(s)	703, 952, 955, 966
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	4 cut(s)	486, 636, 813, 959
MaeIII	GTNAC	2 cut(s)	364, 997
MalI	GATC	2 cut(s)	857, 1013
MboI	GATC	2 cut(s)	855, 1011
MboII	GAAGA	3 cut(s)	317, 707, 1033
MhlI	GDGCHC	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	928
MluCI	AATT	7 cut(s)	28, 37, 59, 177, 682, 721, 1106
MluI	ACGCGT	1 cut(s)	1001
MluNI	TGGCCA	1 cut(s)	928
MlyI	GAGTC	1 cut(s)	892
MmeI	TCCRAC	1 cut(s)	417
Mox20I	TGGCCA	1 cut(s)	928
Mph1103I	ATGCAT	1 cut(s)	621
MscI	TGGCCA	1 cut(s)	928
MseI	TTAA	5 cut(s)	138, 345, 375, 465, 1071
MslI	CAYNNNNRTG	2 cut(s)	275, 624
Msp20I	TGGCCA	1 cut(s)	928
MspI	CCGG	2 cut(s)	490, 503
MspR9I	CCNGG	2 cut(s)	491, 503
Mva1269I	GAATGC	2 cut(s)	226, 550
MvnI	CGCG	1 cut(s)	1003
MwoI	GCNNNNNNNGC	3 cut(s)	266, 320, 652
NciI	CCSGG	2 cut(s)	491, 503
NdeII	GATC	2 cut(s)	855, 1011
NheI	GCTAGC	2 cut(s)	485, 812
NlaIV	GGNNCC	1 cut(s)	954
NmuCI	GTSAC	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	621
NspI	RCATGY	2 cut(s)	730, 941
PagI	TCATGA	2 cut(s)	858, 1014
PciI	ACATGT	2 cut(s)	726, 937
PciSI	GCTCTTC	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	548
PctI	GAATGC	2 cut(s)	226, 550
PfeI	GAWTC	6 cut(s)	422, 532, 553, 773, 779, 1028
PkrI	GCNGC	4 cut(s)	718, 967, 970, 981
PleI	GAGTC	1 cut(s)	891
PpsI	GAGTC	1 cut(s)	891
PpuMI	RGGWCCY	2 cut(s)	128, 250
PscI	ACATGT	2 cut(s)	726, 937
Psp5II	RGGWCCY	2 cut(s)	128, 250
PspN4I	GGNNCC	1 cut(s)	954
PspPI	GGNCC	4 cut(s)	128, 250, 500, 800
PspPPI	RGGWCCY	2 cut(s)	128, 250
PstI	CTGCAG	1 cut(s)	589
RsaI	GTAC	6 cut(s)	6, 146, 163, 515, 541, 640
RsaNI	GTAC	6 cut(s)	5, 145, 162, 514, 540, 639
RseI	CAYNNNNRTG	2 cut(s)	275, 624
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	5 cut(s)	138, 345, 375, 465, 1071
SatI	GCNGC	4 cut(s)	717, 966, 969, 980
Sau3AI	GATC	2 cut(s)	855, 1011
Sau96I	GGNCC	4 cut(s)	128, 250, 500, 800
ScaI	AGTACT	2 cut(s)	146, 640
SchI	GAGTC	1 cut(s)	892
ScrFI	CCNGG	2 cut(s)	491, 503
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	1 cut(s)	606
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	3 cut(s)	128, 250, 800
SmiMI	CAYNNNNRTG	2 cut(s)	275, 624
Sse9I	AATT	7 cut(s)	28, 37, 59, 177, 682, 721, 1106
SspMI	CTAG	4 cut(s)	486, 636, 813, 959
StyD4I	CCNGG	2 cut(s)	489, 501
TaaI	ACNGT	2 cut(s)	790, 1050
TaqI	TCGA	4 cut(s)	42, 181, 551, 806
TasI	AATT	7 cut(s)	28, 37, 59, 177, 682, 721, 1106
TatI	WGTACW	3 cut(s)	144, 513, 638
TfiI	GAWTC	6 cut(s)	422, 532, 553, 773, 779, 1028
Tru1I	TTAA	5 cut(s)	138, 345, 375, 465, 1071
Tru9I	TTAA	5 cut(s)	138, 345, 375, 465, 1071
TscAI	CASTG	2 cut(s)	526, 594
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	4 cut(s)	716, 965, 968, 979
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	4 cut(s)	53, 212, 708, 875
TspRI	CASTG	2 cut(s)	526, 594
VpaK11BI	GGWCC	3 cut(s)	128, 250, 800
XapI	RAATTY	1 cut(s)	682
XceI	RCATGY	2 cut(s)	730, 941
XspI	CTAG	4 cut(s)	486, 636, 813, 959
ZrmI	AGTACT	2 cut(s)	146, 640
Zsp2I	ATGCAT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.