Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006847

Physical Location & Seq

Genomic Coordinates Reverse (-)

51430549 .. 51431971

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG251200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGTACGCCTCCATTTCCAGAGCTTCAATTCTTGTAATTTCGATTGGAATAGTGCTCAATTTCATGTGTTGGTCAATGGGTTTGTGGTTTTGAAAGTCAGCAACTTTGGATTTGGGGGTGTATTAGGTCCTATGATTAAGGAGTACTTGATTTGGGTCGATACTGGAAAGCTTGTAATTCGATTTGTTCCTGATAAAAAGTCAAGCTTTGCGTTTGTGAATGCGATTGAGGTCGTTTCTGCACCTAAGGACCTTGTTGCTGACACTGCAATGTATGTGAGTGATGGGAAAGTTGTGGGTTTTGATGGGTTGGGTAAGCAAGCTCTTCAAGTTGTGCATAGGGTCAATGTGGGAGGTCATAAAGTGACGCCCTTTAATGATAGTCTGTGGAGGACTTGGGTTACTGATGAGGAGTTTTTCGATTCGGGTTTCGGGTCGGAGAGGGTTTATTTTGGGGGGAGGATTAAGTATCAGGATGGAGGGGCTAGCCGGGAAGTTGGTCCGGATAATGTGTACAACACTGCAAGATTGATTCGTAGACCATCGAACGCCAGCATGCCATACGCCATTGATGGTATATTGAATGGTATTGAGATCATGAAGTTGAATAACTCAGTTGGGAGTCTTGATGTATCTCCAGTTAGTTTAGCAGTTGATTATACATGCCCAGATGTGAGACTTTCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

229

Amino Acids

25.27

Weight (kDa)

6.09

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00300
fragaria_vesca	FvH4_7g14970
malus_domestica	MD01G1068300.v1.1
prunus_persica	Prupe.2G174400_v2.0.a1
pyrus_communis	pycom01g09750 pycom07g13040
rosa_chinensis	RchiOBHm_Chr1g0357011
rosa_laevigata	RLG00000028061 RLG00000028064
rosa_multiflora	Rmu_sc0000166.1_g000033 Rmu_sc0000166.1_g000037 Rmu_sc0003936.1_g000020 Rmu_sc0004595.1_g000016 Rmu_sc0004595.1_g000017 Rmu_sc0004595.1_g000021
rosa_roxburghii	Rroxscaffold_4G00299130
rosa_rugosa	Rorug01G0252700 Rorug01G0252800
rosa_samantha	Rh1AG267200 Rh1BG234700 Rh1BG235000 Rh1CG250600 Rh1CG251000 Rh1CG251200 Rh1DG262100 Rh1DG262400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	538
AccIII	TCCGGA	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	368
AfaI	GTAC	3 cut(s)	6, 146, 515
AgsI	TTSAA	5 cut(s)	28, 94, 329, 583, 607
AluBI	AGCT	4 cut(s)	24, 172, 207, 323
AluI	AGCT	4 cut(s)	24, 172, 207, 323
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	670
Aor13HI	TCCGGA	1 cut(s)	502
AspS9I	GGNCC	3 cut(s)	128, 250, 500
AsuC2I	CCSGG	1 cut(s)	491
AsuNHI	GCTAGC	1 cut(s)	485
AvaII	GGWCC	3 cut(s)	128, 250, 500
AxyI	CCTNAGG	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	58
BccI	CCATC	5 cut(s)	278, 299, 470, 550, 566
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	670
BfaI	CTAG	1 cut(s)	486
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	3 cut(s)	128, 250, 500
BmgT120I	GGNCC	3 cut(s)	128, 250, 500
BmrFI	CCNGG	1 cut(s)	491
BmtI	GCTAGC	1 cut(s)	489
BpmI	CTGGAG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	368
BsaWI	WCCGGW	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	169, 638
Bse21I	CCTNAGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	276
BseAI	TCCGGA	1 cut(s)	502
BseGI	GGATG	1 cut(s)	481
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	2 cut(s)	169, 638
BseRI	GAGGAG	1 cut(s)	425
BsgI	GTGCAG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	490, 503
BsmAI	GTCTC	1 cut(s)	670
BsmI	GAATGC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp13I	TCCGGA	1 cut(s)	502
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	1 cut(s)	594
BspCNI	CTCAG	1 cut(s)	626
BspEI	TCCGGA	1 cut(s)	502
BspHI	TCATGA	1 cut(s)	597
BspOI	GCTAGC	1 cut(s)	489
BspQI	GCTCTTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	276
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	169, 638
BssMI	GATC	1 cut(s)	594
BssNI	GRCGYC	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	4 cut(s)	321, 487, 553, 557
BstDEI	CTNAG	2 cut(s)	246, 613
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	1 cut(s)	597
BstMAI	GTCTC	1 cut(s)	670
BstMBI	GATC	1 cut(s)	594
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNSI	RCATGY	2 cut(s)	559, 666
BstSCI	CCNGG	1 cut(s)	489
Bsu36I	CCTNAGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	481
BtsI	GCAGTG	2 cut(s)	264, 519
BtsIMutI	CAGTG	2 cut(s)	264, 519
Cac8I	GCNNGC	4 cut(s)	321, 487, 553, 557
CciI	TCATGA	1 cut(s)	597
Cfr13I	GGNCC	3 cut(s)	128, 250, 500
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	5, 145, 514
CviAII	CATG	4 cut(s)	65, 556, 598, 663
CviJI	RGCY	6 cut(s)	24, 172, 207, 323, 485, 489
CviKI_1	RGCY	6 cut(s)	24, 172, 207, 323, 485, 489
CviQI	GTAC	3 cut(s)	5, 145, 514
DdeI	CTNAG	2 cut(s)	246, 613
DpnI	GATC	1 cut(s)	596
DpnII	GATC	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Eco47I	GGWCC	3 cut(s)	128, 250, 500
Eco81I	CCTNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	2 cut(s)	128, 250
FaeI	CATG	4 cut(s)	68, 559, 601, 666
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 191, 223
FatI	CATG	4 cut(s)	64, 555, 597, 662
FblI	GTMKAC	1 cut(s)	538
FokI	GGATG	1 cut(s)	488
FspBI	CTAG	1 cut(s)	486
GsuI	CTGGAG	1 cut(s)	621
HapII	CCGG	2 cut(s)	490, 503
HgaI	GACGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	368
Hin1II	CATG	4 cut(s)	68, 559, 601, 666
HindIII	AAGCTT	2 cut(s)	170, 205
HinfI	GANTC	3 cut(s)	422, 532, 622
HpaII	CCGG	2 cut(s)	490, 503
Hpy166II	GTNNAC	2 cut(s)	514, 539
Hpy188I	TCNGA	2 cut(s)	439, 685
Hpy188III	TCNNGA	6 cut(s)	19, 191, 473, 503, 598, 626
Hpy8I	GTNNAC	2 cut(s)	514, 539
HpyCH4V	TGCA	4 cut(s)	242, 269, 337, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	246, 613
Hsp92I	GRCGYC	1 cut(s)	368
Hsp92II	CATG	4 cut(s)	68, 559, 601, 666
Kpn2I	TCCGGA	1 cut(s)	502
Kzo9I	GATC	1 cut(s)	594
LguI	GCTCTTC	1 cut(s)	330
LpnPI	CCDG	9 cut(s)	32, 150, 204, 458, 503, 516, 565, 651, 681
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	364, 400
MalI	GATC	1 cut(s)	596
MboI	GATC	1 cut(s)	594
MboII	GAAGA	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	4 cut(s)	28, 37, 59, 177
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	8 cut(s)	20, 223, 347, 384, 403, 435, 453, 473
MroI	TCCGGA	1 cut(s)	502
MseI	TTAA	3 cut(s)	138, 375, 465
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	2 cut(s)	490, 503
MspR9I	CCNGG	1 cut(s)	491
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	266
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	1 cut(s)	594
NheI	GCTAGC	1 cut(s)	485
NlaIII	CATG	4 cut(s)	68, 559, 601, 666
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	2 cut(s)	559, 666
PaeI	GCATGC	1 cut(s)	559
PagI	TCATGA	1 cut(s)	597
PciSI	GCTCTTC	1 cut(s)	330
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	422, 532
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
PpuMI	RGGWCCY	2 cut(s)	128, 250
Psp5II	RGGWCCY	2 cut(s)	128, 250
PspPI	GGNCC	3 cut(s)	128, 250, 500
PspPPI	RGGWCCY	2 cut(s)	128, 250
RsaI	GTAC	3 cut(s)	6, 146, 515
RsaNI	GTAC	3 cut(s)	5, 145, 514
RseI	CAYNNNNRTG	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	138, 375, 465
Sau3AI	GATC	1 cut(s)	594
Sau96I	GGNCC	3 cut(s)	128, 250, 500
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	1 cut(s)	491
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	9 cut(s)	26, 130, 174, 209, 234, 247, 255, 325, 358
SinI	GGWCC	3 cut(s)	128, 250, 500
SmiMI	CAYNNNNRTG	1 cut(s)	269
SphI	GCATGC	1 cut(s)	559
Sse9I	AATT	4 cut(s)	28, 37, 59, 177
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	489
TaqI	TCGA	5 cut(s)	42, 159, 181, 420, 545
TasI	AATT	4 cut(s)	28, 37, 59, 177
TatI	WGTACW	2 cut(s)	144, 513
TfiI	GAWTC	2 cut(s)	422, 532
Tru1I	TTAA	3 cut(s)	138, 375, 465
Tru9I	TTAA	3 cut(s)	138, 375, 465
TscAI	CASTG	2 cut(s)	271, 526
TseFI	GTSAC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	53, 614
TspRI	CASTG	2 cut(s)	271, 526
VpaK11BI	GGWCC	3 cut(s)	128, 250, 500
XceI	RCATGY	2 cut(s)	559, 666
XmiI	GTMKAC	1 cut(s)	538
XspI	CTAG	1 cut(s)	486
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.