Rh1DG262100

Fringe-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006847
Physical Location & Seq
Reverse (-)
47951139 .. 47951942
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG262100.1

Sequence Viewer

Length: 555 bp
ATGACATGGGTGTTTCCTGCAGTTGGTGGGTATAAGTATTTGGTTCGGATGCATTTCTGTGATTTTGCTAGTACTTCGCTTGGTTTGCTGTATTTCAATGTTTATGTGAATGGGAATTTGGCATATGAAGATTTGGATTTGTCTAAGGCTGCAAATTACATGTTGGCTTCTCCCTTCTATGCGGATTTTGTGGTTGATAGAGATGATTCGGGTTCTTTGACTGTAAGTGTAGGACCATCAAACGCTAGCGTGCCGTACGCCATTGATGGTATATTGAATGGTATTGAGATCATGAAGTTGAATAACTCAGTTGGGAGTCTTGATGGCGAGCATTGTGCAGAGTGGGTTTTGGGGAGTTGGCCAAAGGGACATGTTAGTCTCTTGGTTCCTCTAGTTGCTGCTGCTTGTGTGCTGCTAAGCTTATCTATGGTTACGCGTAGGAGGATCATGAGGAAGAAGGAATCTGTGGCATGGACGAAACTGCCTGTGGATGTTTCAGAAGTTAATGCCAAGCATGGAAATATACATCAATCGGATAAATTGGAAAGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604 Malectin_like

Protein Analysis

184

Amino Acids

20.15

Weight (kDa)

5.91

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 10 - 99 7.2e-08 Malectin-like domain
Malectin PF11721 12 - 64 4.5e-06 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 375
AccII CGCG 1 cut(s) 436
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 452
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 2 cut(s) 73, 257
AfiI CCNNNNNNNGG 1 cut(s) 23
AflIII ACRYGT 3 cut(s) 159, 370, 434
AgsI TTSAA 3 cut(s) 97, 277, 301
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 1 cut(s) 420
AluI AGCT 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 1 cut(s) 452
AoxI GGCC 1 cut(s) 359
ApeKI GCWGC 4 cut(s) 149, 398, 401, 412
ApoI RAATTY 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 233
AsuNHI GCTAGC 1 cut(s) 245
AvaII GGWCC 1 cut(s) 233
BalI TGGCCA 1 cut(s) 361
BbvI GCAGC 4 cut(s) 136, 385, 388, 399
BccI CCATC 3 cut(s) 244, 260, 317
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 3 cut(s) 69, 246, 392
BfmI CTRYAG 1 cut(s) 18
BisI GCNGC 4 cut(s) 150, 399, 402, 413
BlpI GCTNAGC 1 cut(s) 416
BlsI GCNGC 4 cut(s) 151, 400, 403, 414
BmcAI AGTACT 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 387
BmsI GCATC 1 cut(s) 39
BmtI GCTAGC 1 cut(s) 249
Bpu1102I GCTNAGC 1 cut(s) 416
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 54, 496
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 321
BseXI GCAGC 4 cut(s) 136, 385, 388, 399
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 436
BshFI GGCC 1 cut(s) 361
BsiWI CGTACG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 1 cut(s) 361
Bsp143I GATC 2 cut(s) 288, 444
Bsp1720I GCTNAGC 1 cut(s) 416
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 361
BspCNI CTCAG 1 cut(s) 320
BspFNI CGCG 1 cut(s) 436
BspHI TCATGA 2 cut(s) 291, 447
BspLI GGNNCC 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 22
BspOI GCTAGC 1 cut(s) 249
BspPI GGATC 1 cut(s) 452
BssMI GATC 2 cut(s) 288, 444
Bst4CI ACNGT 1 cut(s) 223
BstC8I GCNNGC 3 cut(s) 247, 251, 329
BstDEI CTNAG 3 cut(s) 144, 307, 416
BstF5I GGATG 2 cut(s) 54, 496
BstFNI CGCG 1 cut(s) 436
BstKTI GATC 2 cut(s) 291, 447
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 2 cut(s) 288, 444
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNSI RCATGY 2 cut(s) 163, 374
BstSFI CTRYAG 1 cut(s) 18
BstUI CGCG 1 cut(s) 436
BstV1I GCAGC 4 cut(s) 136, 385, 388, 399
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 54, 496
Cac8I GCNNGC 3 cut(s) 247, 251, 329
CciI TCATGA 2 cut(s) 291, 447
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 72, 256
CviAII CATG 7 cut(s) 6, 160, 292, 371, 448, 471, 515
CviJI RGCY 4 cut(s) 149, 167, 361, 420
CviKI_1 RGCY 4 cut(s) 149, 167, 361, 420
CviQI GTAC 2 cut(s) 72, 256
DdeI CTNAG 3 cut(s) 144, 307, 416
DpnI GATC 2 cut(s) 290, 446
DpnII GATC 2 cut(s) 288, 444
DrdI GACNNNNNNGTC 1 cut(s) 375
DseDI GACNNNNNNGTC 1 cut(s) 375
EaeI YGGCCR 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 54
FaeI CATG 7 cut(s) 9, 163, 295, 374, 451, 474, 518
FaqI GGGAC 1 cut(s) 381
FatI CATG 7 cut(s) 5, 159, 291, 370, 447, 470, 514
FauNDI CATATG 1 cut(s) 124
Fnu4HI GCNGC 4 cut(s) 150, 399, 402, 413
FokI GGATG 2 cut(s) 61, 503
Fsp4HI GCNGC 4 cut(s) 150, 399, 402, 413
FspBI CTAG 3 cut(s) 69, 246, 392
GluI GCNGC 4 cut(s) 150, 399, 402, 413
HaeIII GGCC 1 cut(s) 361
Hin1II CATG 7 cut(s) 9, 163, 295, 374, 451, 474, 518
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 3 cut(s) 206, 316, 461
Hpy188I TCNGA 3 cut(s) 48, 499, 535
Hpy188III TCNNGA 3 cut(s) 292, 320, 448
HpyAV CCTTC 2 cut(s) 184, 451
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 20, 52, 152, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 3 cut(s) 144, 307, 416
Hsp92II CATG 7 cut(s) 9, 163, 295, 374, 451, 474, 518
Kzo9I GATC 2 cut(s) 288, 444
LpnPI CCDG 2 cut(s) 30, 498
Lsp1109I GCAGC 4 cut(s) 136, 385, 388, 399
LweI GCATC 1 cut(s) 39
MaeI CTAG 3 cut(s) 69, 246, 392
MaeIII GTNAC 1 cut(s) 430
MalI GATC 2 cut(s) 290, 446
MboI GATC 2 cut(s) 288, 444
MboII GAAGA 2 cut(s) 140, 466
MlsI TGGCCA 1 cut(s) 361
MluCI AATT 3 cut(s) 115, 154, 539
MluI ACGCGT 1 cut(s) 434
MluNI TGGCCA 1 cut(s) 361
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 3 cut(s) 399, 435, 444
Mox20I TGGCCA 1 cut(s) 361
Mph1103I ATGCAT 1 cut(s) 54
MscI TGGCCA 1 cut(s) 361
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 57
Msp20I TGGCCA 1 cut(s) 361
MvnI CGCG 1 cut(s) 436
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeI CATATG 1 cut(s) 124
NdeII GATC 2 cut(s) 288, 444
NheI GCTAGC 1 cut(s) 245
NlaIII CATG 7 cut(s) 9, 163, 295, 374, 451, 474, 518
NlaIV GGNNCC 1 cut(s) 387
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 2 cut(s) 163, 374
PagI TCATGA 2 cut(s) 291, 447
PciI ACATGT 2 cut(s) 159, 370
PfeI GAWTC 2 cut(s) 206, 461
Pfl23II CGTACG 1 cut(s) 255
PkrI GCNGC 4 cut(s) 151, 400, 403, 414
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PscI ACATGT 2 cut(s) 159, 370
PspLI CGTACG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 22
RsaI GTAC 2 cut(s) 73, 257
RsaNI GTAC 2 cut(s) 72, 256
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 4 cut(s) 150, 399, 402, 413
Sau3AI GATC 2 cut(s) 288, 444
Sau96I GGNCC 1 cut(s) 233
ScaI AGTACT 1 cut(s) 73
SchI GAGTC 1 cut(s) 325
SetI ASST 1 cut(s) 422
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 3 cut(s) 115, 154, 539
SsiI CCGC 1 cut(s) 182
SspMI CTAG 3 cut(s) 69, 246, 392
TaaI ACNGT 1 cut(s) 223
TasI AATT 3 cut(s) 115, 154, 539
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 2 cut(s) 206, 461
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseI GCWGC 4 cut(s) 149, 398, 401, 412
TspDTI ATGAA 2 cut(s) 141, 308
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 1 cut(s) 115
XceI RCATGY 2 cut(s) 163, 374
XspI CTAG 3 cut(s) 69, 246, 392
ZrmI AGTACT 1 cut(s) 73
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.