Rroxscaffold_4G00299130

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006847
Physical Location & Seq
Forward (+)
19055765 .. 19061360
5596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299130.1

Sequence Viewer

Length: 1191 bp
ATGGTGCGATGGGATTCTGGGTTTTGTGGGGGGTTTTCTGGCGGAGCTTGGTCGTGGGTTTTTGCTGTCTGGCAAAGGAGAGGGTGGGAGGGGAGGTTGGACCCAGACAGGCCGGAATGGACCGGCCGGAGTGCTGGACTGTACTGTGCTGTACTGAGTTTACTGACCCTCACATGGCTTCCCACACATTGCATTGTACCACACCACACTTTGCCAACCTCACCCCAAAAACTCCAGCCTATCACCGTCGACCGCGTGGGTCCCGCCAATTACCCTCCTAACGCGGACTCGGACTTTCCCACCCATTTAAACCCGAAACCCAGTCTCTCGTCGGATCTTTCCACCTTCGAATTTCCGATGGCGTTTCCCTACACCTACACATACCTCACGCTCTTTCTCTCTCTACTTTCTCTCTCTACCCTCTCCCTCGCCCTCTCCGCCTTCTCTCCCGTCGACAACTACCTCTTCGACTGCGGCTCCACCGTGGACTCCACCTTCGACGATGGCCGCCGCTTCGTCCCTGACTCGTCCACCTCAGCTCGCTCAATTTCACTCCGAAACCAAAACCCCAATCCCAATTCCCCCCAAATTTACCAAACCGCTAGGGTTTTCCGGCGGCCATCCAAGTACGAGTTCCAGATCCGCGACCCGGGGACCCAAATGGTACGCCTCCATTTCCAGAGCTTCAATTCTTGTCATTTCGATTGGAATAGTGCTCAATTTCATGTCTTGGTCAATGGGTTTGTGGTTTTGAAAGTCAACAACTTTGGATTTGGGGGTGCATTAGGTCCTACGATTAAGGAGTACTTGATTTGGGTCGGTACTGGAAAGCTTGTGATTCGATTTGTTCCTGATAAAAAATCAAGCTTTGCGTTTGTGAATGCGATTGAGGTCGTTTCTGCACCTAAGGACCTTGTTGCTGATACTGCAATGTATGTGAGTGATGGGAAAGTTGTGGGTTTTGATGGGTTGGCTAAGCAAGCTCTTCAAGTTGTGCATAGGGTTAATGTGGGAGGTCATAAAGTGACCCCCTTTAATGATAGTCTGTGGAGGACTTGGATTACTGATGAGGAGTTTTTTTATTCGGGTTTCGGGTCGGAGACGGTTTATTTTGGGGGAGGATTAAGTATCAGGATGGAGGGGCTAGCCGGGAAGTTGGCCCGGATAATGTTTACAACACTGCAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

396

Amino Acids

44.18

Weight (kDa)

7.69

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 157 - 355 2.8e-11 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 249, 453
AccII CGCG 3 cut(s) 255, 284, 645
AclWI GGATC 2 cut(s) 342, 634
AcoI YGGCCR 3 cut(s) 124, 505, 617
AcsI RAATTY 2 cut(s) 350, 588
AfaI GTAC 7 cut(s) 143, 153, 198, 629, 666, 806, 823
AfiI CCNNNNNNNGG 2 cut(s) 174, 649
AgsI TTSAA 3 cut(s) 688, 754, 989
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AluBI AGCT 6 cut(s) 47, 539, 684, 832, 867, 983
AluI AGCT 6 cut(s) 47, 539, 684, 832, 867, 983
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 2 cut(s) 329, 1094
AlwI GGATC 2 cut(s) 342, 634
Ama87I CYCGRG 1 cut(s) 649
AoxI GGCC 5 cut(s) 110, 124, 505, 617, 1158
ApoI RAATTY 2 cut(s) 350, 588
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
AspS9I GGNCC 7 cut(s) 100, 120, 260, 654, 788, 910, 1159
AsuC2I CCSGG 4 cut(s) 650, 651, 1150, 1162
AsuHPI GGTGA 2 cut(s) 213, 235
AsuII TTCGAA 1 cut(s) 348
AsuNHI GCTAGC 1 cut(s) 1144
AvaI CYCGRG 1 cut(s) 649
AvaII GGWCC 6 cut(s) 100, 120, 260, 654, 788, 910
AxyI CCTNAGG 1 cut(s) 906
Bbv12I GWGCWC 1 cut(s) 718
BbvCI CCTCAGC 1 cut(s) 535
BccI CCATC 7 cut(s) 3, 352, 497, 628, 938, 959, 1129
BcnI CCSGG 4 cut(s) 650, 651, 1150, 1162
BcoDI GTCTC 2 cut(s) 329, 1094
BfaI CTAG 2 cut(s) 603, 1145
BisI GCNGC 4 cut(s) 475, 508, 511, 617
BlpI GCTNAGC 1 cut(s) 975
BlsI GCNGC 4 cut(s) 476, 509, 512, 618
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 4 cut(s) 650, 651, 1150, 1162
Bme18I GGWCC 6 cut(s) 100, 120, 260, 654, 788, 910
BmeT110I CYCGRG 1 cut(s) 649
BmgT120I GGNCC 7 cut(s) 100, 120, 260, 654, 788, 910, 1159
BmiI GGNNCC 6 cut(s) 102, 261, 262, 478, 655, 656
BmrFI CCNGG 4 cut(s) 650, 651, 1150, 1162
BmrI ACTGGG 1 cut(s) 315
BmtI GCTAGC 1 cut(s) 1148
BmuI ACTGGG 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 535
Bpu1102I GCTNAGC 1 cut(s) 975
Bpu14I TTCGAA 1 cut(s) 348
BpuMI CCSGG 4 cut(s) 650, 651, 1150, 1162
BsaJI CCNNGG 3 cut(s) 483, 649, 650
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 461, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 649
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 321, 829
Bse21I CCTNAGG 1 cut(s) 906
Bse3DI GCAATG 2 cut(s) 187, 936
BseDI CCNNGG 3 cut(s) 483, 649, 650
BseGI GGATG 2 cut(s) 620, 1140
BseLI CCNNNNNNNGG 2 cut(s) 174, 649
BseMI GCAATG 2 cut(s) 187, 936
BseMII CTCAG 2 cut(s) 146, 549
BseNI ACTGG 2 cut(s) 321, 829
BseRI GAGGAG 1 cut(s) 1085
BseX3I CGGCCG 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 885
Bsh1236I CGCG 3 cut(s) 255, 284, 645
Bsh1285I CGRYCG 2 cut(s) 127, 253
BshFI GGCC 5 cut(s) 112, 126, 507, 619, 1160
BsiEI CGRYCG 2 cut(s) 127, 253
BsiHKAI GWGCWC 1 cut(s) 718
BsiHKCI CYCGRG 1 cut(s) 649
BsiSI CCGG 7 cut(s) 113, 123, 127, 613, 650, 1149, 1162
BslFI GGGAC 3 cut(s) 246, 503, 667
BslI CCNNNNNNNGG 2 cut(s) 174, 649
BsmAI GTCTC 2 cut(s) 329, 1094
BsmBI CGTCTC 1 cut(s) 1094
BsmFI GGGAC 3 cut(s) 246, 503, 667
BsmI GAATGC 1 cut(s) 886
BsnI GGCC 5 cut(s) 112, 126, 507, 619, 1160
BsoBI CYCGRG 1 cut(s) 649
Bsp119I TTCGAA 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 718
Bsp143I GATC 2 cut(s) 334, 639
Bsp1720I GCTNAGC 1 cut(s) 975
BspANI GGCC 5 cut(s) 112, 126, 507, 619, 1160
BspCNI CTCAG 2 cut(s) 147, 548
BspFNI CGCG 3 cut(s) 255, 284, 645
BspLI GGNNCC 6 cut(s) 102, 261, 262, 478, 655, 656
BspOI GCTAGC 1 cut(s) 1148
BspPI GGATC 2 cut(s) 342, 634
BspQI GCTCTTC 1 cut(s) 990
BspT104I TTCGAA 1 cut(s) 348
BsrDI GCAATG 2 cut(s) 187, 936
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 321, 829
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 483, 649, 650
BssMI GATC 2 cut(s) 334, 639
Bst4CI ACNGT 5 cut(s) 141, 146, 247, 484, 1105
Bst6I CTCTTC 2 cut(s) 470, 990
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 3 cut(s) 541, 981, 1146
BstDEI CTNAG 4 cut(s) 155, 535, 906, 975
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 620, 1140
BstFNI CGCG 3 cut(s) 255, 284, 645
BstKTI GATC 2 cut(s) 337, 642
BstMAI GTCTC 2 cut(s) 329, 1094
BstMBI GATC 2 cut(s) 334, 639
BstMCI CGRYCG 2 cut(s) 127, 253
BstMWI GCNNNNNNNGC 3 cut(s) 437, 926, 980
BstSCI CCNGG 4 cut(s) 648, 649, 1148, 1160
BstUI CGCG 3 cut(s) 255, 284, 645
BstX2I RGATCY 2 cut(s) 334, 639
BstYI RGATCY 2 cut(s) 334, 639
BstZI CGGCCG 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 906
BsuRI GGCC 5 cut(s) 112, 126, 507, 619, 1160
BtgI CCRYGG 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 22
BtsCI GGATG 2 cut(s) 620, 1140
BtsI GCAGTG 1 cut(s) 1178
BtsIMutI CAGTG 1 cut(s) 1178
Cac8I GCNNGC 3 cut(s) 541, 981, 1146
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 7 cut(s) 100, 120, 260, 654, 788, 910, 1159
Cfr9I CCCGGG 1 cut(s) 649
Csp6I GTAC 7 cut(s) 142, 152, 197, 628, 665, 805, 822
CviAII CATG 2 cut(s) 174, 725
CviQI GTAC 7 cut(s) 142, 152, 197, 628, 665, 805, 822
DdeI CTNAG 4 cut(s) 155, 535, 906, 975
DpnI GATC 2 cut(s) 336, 641
DpnII GATC 2 cut(s) 334, 639
DraI TTTAAA 1 cut(s) 309
EaeI YGGCCR 3 cut(s) 124, 505, 617
EagI CGGCCG 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 470, 990
EarI CTCTTC 2 cut(s) 470, 990
EciI GGCGGA 2 cut(s) 57, 427
EclXI CGGCCG 1 cut(s) 124
Eco47I GGWCC 6 cut(s) 100, 120, 260, 654, 788, 910
Eco52I CGGCCG 1 cut(s) 124
Eco81I CCTNAGG 1 cut(s) 906
Eco88I CYCGRG 1 cut(s) 649
EcoO109I RGGNCCY 4 cut(s) 260, 654, 788, 910
Esp3I CGTCTC 1 cut(s) 1094
FaeI CATG 2 cut(s) 177, 728
FaiI YATR 6 cut(s) 175, 382, 726, 936, 999, 1020
FalI AAGNNNNNCTT 2 cut(s) 791, 823
FaqI GGGAC 3 cut(s) 246, 503, 667
FatI CATG 2 cut(s) 173, 724
FauI CCCGC 1 cut(s) 271
FblI GTMKAC 2 cut(s) 249, 453
Fnu4HI GCNGC 4 cut(s) 475, 508, 511, 617
FokI GGATG 2 cut(s) 607, 1147
Fsp4HI GCNGC 4 cut(s) 475, 508, 511, 617
FspBI CTAG 2 cut(s) 603, 1145
GluI GCNGC 4 cut(s) 475, 508, 511, 617
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 5 cut(s) 112, 126, 507, 619, 1160
HapII CCGG 7 cut(s) 113, 123, 127, 613, 650, 1149, 1162
Hin1II CATG 2 cut(s) 177, 728
HincII GTYRAC 3 cut(s) 250, 454, 760
HindII GTYRAC 3 cut(s) 250, 454, 760
HindIII AAGCTT 2 cut(s) 830, 865
HinfI GANTC 5 cut(s) 14, 287, 488, 524, 838
HpaII CCGG 7 cut(s) 113, 123, 127, 613, 650, 1149, 1162
HphI GGTGA 2 cut(s) 213, 235
Hpy166II GTNNAC 7 cut(s) 161, 250, 454, 487, 531, 760, 1173
Hpy188I TCNGA 5 cut(s) 292, 334, 357, 557, 1099
Hpy188III TCNNGA 4 cut(s) 637, 679, 851, 1132
Hpy8I GTNNAC 7 cut(s) 161, 250, 454, 487, 531, 760, 1173
Hpy99I CGWCG 4 cut(s) 251, 334, 455, 503
HpyAV CCTTC 3 cut(s) 355, 451, 505
HpyCH4III ACNGT 5 cut(s) 141, 146, 247, 484, 1105
HpyCH4V TGCA 6 cut(s) 192, 782, 902, 929, 997, 1183
HpyF10VI GCNNNNNNNGC 3 cut(s) 437, 926, 980
HpyF3I CTNAG 4 cut(s) 155, 535, 906, 975
Hsp92II CATG 2 cut(s) 177, 728
KflI GGGWCCC 2 cut(s) 260, 654
Kzo9I GATC 2 cut(s) 334, 639
LguI GCTCTTC 1 cut(s) 990
LmnI GCTCC 2 cut(s) 44, 482
MaeI CTAG 2 cut(s) 603, 1145
MaeIII GTNAC 1 cut(s) 1024
MalI GATC 2 cut(s) 336, 641
MboI GATC 2 cut(s) 334, 639
MboII GAAGA 2 cut(s) 457, 977
MflI RGATCY 2 cut(s) 334, 639
MhlI GDGCHC 1 cut(s) 718
MluCI AATT 7 cut(s) 268, 350, 546, 577, 588, 688, 719
MlyI GAGTC 3 cut(s) 281, 482, 518
MmeI TCCRAC 3 cut(s) 78, 312, 1077
MseI TTAA 5 cut(s) 308, 798, 1005, 1035, 1124
MspI CCGG 7 cut(s) 113, 123, 127, 613, 650, 1149, 1162
MspR9I CCNGG 4 cut(s) 650, 651, 1150, 1162
Mva1269I GAATGC 1 cut(s) 886
MvnI CGCG 3 cut(s) 255, 284, 645
MwoI GCNNNNNNNGC 3 cut(s) 437, 926, 980
NciI CCSGG 4 cut(s) 650, 651, 1150, 1162
NdeII GATC 2 cut(s) 334, 639
NheI GCTAGC 1 cut(s) 1144
NlaIII CATG 2 cut(s) 177, 728
NlaIV GGNNCC 6 cut(s) 102, 261, 262, 478, 655, 656
NmuCI GTSAC 1 cut(s) 1024
NspV TTCGAA 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 990
PctI GAATGC 1 cut(s) 886
PfeI GAWTC 2 cut(s) 14, 838
PkrI GCNGC 4 cut(s) 476, 509, 512, 618
PleI GAGTC 3 cut(s) 281, 482, 518
PpsI GAGTC 3 cut(s) 281, 482, 518
PpuMI RGGWCCY 4 cut(s) 260, 654, 788, 910
Psp5II RGGWCCY 4 cut(s) 260, 654, 788, 910
PspN4I GGNNCC 6 cut(s) 102, 261, 262, 478, 655, 656
PspPI GGNCC 7 cut(s) 100, 120, 260, 654, 788, 910, 1159
PspPPI RGGWCCY 4 cut(s) 260, 654, 788, 910
PsuI RGATCY 2 cut(s) 334, 639
RsaI GTAC 7 cut(s) 143, 153, 198, 629, 666, 806, 823
RsaNI GTAC 7 cut(s) 142, 152, 197, 628, 665, 805, 822
SalI GTCGAC 2 cut(s) 248, 452
SapI GCTCTTC 1 cut(s) 990
SaqAI TTAA 5 cut(s) 308, 798, 1005, 1035, 1124
SatI GCNGC 4 cut(s) 475, 508, 511, 617
Sau3AI GATC 2 cut(s) 334, 639
Sau96I GGNCC 7 cut(s) 100, 120, 260, 654, 788, 910, 1159
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 3 cut(s) 281, 482, 518
ScrFI CCNGG 4 cut(s) 650, 651, 1150, 1162
SduI GDGCHC 1 cut(s) 718
SfuI TTCGAA 1 cut(s) 348
SinI GGWCC 6 cut(s) 100, 120, 260, 654, 788, 910
SmaI CCCGGG 1 cut(s) 651
Sse9I AATT 7 cut(s) 268, 350, 546, 577, 588, 688, 719
SspMI CTAG 2 cut(s) 603, 1145
StyD4I CCNGG 4 cut(s) 648, 649, 1148, 1160
TaaI ACNGT 5 cut(s) 141, 146, 247, 484, 1105
TaqI TCGA 7 cut(s) 249, 348, 453, 468, 498, 702, 841
TasI AATT 7 cut(s) 268, 350, 546, 577, 588, 688, 719
TatI WGTACW 3 cut(s) 141, 151, 804
TauI GCSGC 4 cut(s) 477, 510, 513, 619
TfiI GAWTC 2 cut(s) 14, 838
Tru1I TTAA 5 cut(s) 308, 798, 1005, 1035, 1124
Tru9I TTAA 5 cut(s) 308, 798, 1005, 1035, 1124
TscAI CASTG 1 cut(s) 1185
TseFI GTSAC 1 cut(s) 1024
Tsp45I GTSAC 1 cut(s) 1024
TspDTI ATGAA 1 cut(s) 713
TspMI CCCGGG 1 cut(s) 649
TspRI CASTG 1 cut(s) 1185
VpaK11BI GGWCC 6 cut(s) 100, 120, 260, 654, 788, 910
XapI RAATTY 2 cut(s) 350, 588
XmaI CCCGGG 1 cut(s) 649
XmiI GTMKAC 2 cut(s) 249, 453
XspI CTAG 2 cut(s) 603, 1145
ZrmI AGTACT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.