Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003936.1

Orthogroup ID

OG0006847

Physical Location & Seq

Genomic Coordinates Forward (+)

83600 .. 83953

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003936.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atggactccaccttcgacgatggtcgccgcttcgttccggactcgtccacttcagctcgctcaatttcactccgaaaccaaaatcccaatcccaattcccccgaaatttaccaaaccgctaaggttttccggtggccatcccagtatgagttccagatccgcgacctgggcacccacatggtacgactccatttccagagcttcaattcttgtaattttgattggaatagtgctcagtttcatgtcttggttaatgggtttatggttctgaaagtcagtaactttggatttgagggtgtaataggtccaatggttagggagtacttgattgggtcagtactgaaaagcttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like

Protein Analysis

117

Amino Acids

13.46

Weight (kDa)

7.95

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006847)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00300
fragaria_vesca	FvH4_7g14970
malus_domestica	MD01G1068300.v1.1
prunus_persica	Prupe.2G174400_v2.0.a1
pyrus_communis	pycom01g09750 pycom07g13040
rosa_chinensis	RchiOBHm_Chr1g0357011
rosa_laevigata	RLG00000028061 RLG00000028064
rosa_multiflora	Rmu_sc0000166.1_g000033 Rmu_sc0000166.1_g000037 Rmu_sc0003936.1_g000020 Rmu_sc0004595.1_g000016 Rmu_sc0004595.1_g000017 Rmu_sc0004595.1_g000021
rosa_roxburghii	Rroxscaffold_4G00299130
rosa_rugosa	Rorug01G0252700 Rorug01G0252800
rosa_samantha	Rh1AG267200 Rh1BG234700 Rh1BG235000 Rh1CG250600 Rh1CG251000 Rh1CG251200 Rh1DG262100 Rh1DG262400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	170
AccII	CGCG	1 cut(s)	162
AccIII	TCCGGA	1 cut(s)	37
AciI	CCGC	3 cut(s)	28, 117, 160
AclWI	GGATC	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	3 cut(s)	183, 323, 339
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	56, 201, 348
AluI	AGCT	3 cut(s)	56, 201, 348
Alw21I	GWGCWC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	151
Aor13HI	TCCGGA	1 cut(s)	37
AoxI	GGCC	1 cut(s)	134
ApoI	RAATTY	1 cut(s)	105
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	136
BanI	GGYRCC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	235
BccI	CCATC	2 cut(s)	14, 145
BciT130I	CCWGG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	29
BmcAI	AGTACT	2 cut(s)	323, 339
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	136
BmuI	ACTGGG	1 cut(s)	136
BoxI	GACNNNNGTC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	2 cut(s)	37, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	142
BseAI	TCCGGA	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	2 cut(s)	38, 130
BslI	CCNNNNNNNGG	1 cut(s)	166
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	173, 235
Bsp13I	TCCGGA	1 cut(s)	37
Bsp143I	GATC	1 cut(s)	156
BspACI	CCGC	3 cut(s)	28, 117, 160
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	120, 234
BstF5I	GGATG	1 cut(s)	137
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	1 cut(s)	167
BstPAI	GACNNNNGTC	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	173
BstUI	CGCG	1 cut(s)	162
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	305
Csp6I	GTAC	3 cut(s)	182, 322, 338
CviAII	CATG	2 cut(s)	178, 242
CviJI	RGCY	4 cut(s)	56, 136, 201, 348
CviKI_1	RGCY	4 cut(s)	56, 136, 201, 348
CviQI	GTAC	3 cut(s)	182, 322, 338
DdeI	CTNAG	2 cut(s)	120, 234
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	134
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	181, 245
FaiI	YATR	4 cut(s)	147, 179, 243, 263
FatI	CATG	2 cut(s)	177, 241
Fnu4HI	GCNGC	1 cut(s)	28
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	2 cut(s)	38, 130
Hin1II	CATG	2 cut(s)	181, 245
HindIII	AAGCTT	1 cut(s)	346
HinfI	GANTC	3 cut(s)	5, 41, 186
HpaII	CCGG	2 cut(s)	38, 130
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	74, 270
Hpy188III	TCNNGA	3 cut(s)	38, 154, 196
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
HpyF3I	CTNAG	2 cut(s)	120, 234
Hsp92II	CATG	2 cut(s)	181, 245
Kpn2I	TCCGGA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	156
LpnPI	CCDG	7 cut(s)	51, 143, 152, 155, 167, 179, 209
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	173, 235
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	5 cut(s)	63, 94, 105, 205, 214
MluNI	TGGCCA	1 cut(s)	136
MlyI	GAGTC	2 cut(s)	35, 180
MnlI	CCTC	1 cut(s)	286
Mox20I	TGGCCA	1 cut(s)	136
MroI	TCCGGA	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	136
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	136
MspI	CCGG	2 cut(s)	38, 130
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	168
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	181, 245
NlaIV	GGNNCC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	29
PleI	GAGTC	2 cut(s)	35, 180
PpsI	GAGTC	2 cut(s)	35, 180
PshAI	GACNNNNGTC	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	3 cut(s)	183, 323, 339
RsaNI	GTAC	3 cut(s)	182, 322, 338
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	28
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	1 cut(s)	305
ScaI	AGTACT	2 cut(s)	323, 339
SchI	GAGTC	2 cut(s)	35, 180
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	2 cut(s)	173, 235
SetI	ASST	7 cut(s)	14, 58, 126, 168, 203, 307, 350
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	5 cut(s)	63, 94, 105, 205, 214
SsiI	CCGC	3 cut(s)	28, 117, 160
StyD4I	CCNGG	1 cut(s)	165
TaqI	TCGA	1 cut(s)	15
TasI	AATT	5 cut(s)	63, 94, 105, 205, 214
TatI	WGTACW	2 cut(s)	321, 337
TauI	GCSGC	1 cut(s)	30
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TspDTI	ATGAA	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	105
ZrmI	AGTACT	2 cut(s)	323, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.