Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006213

Physical Location & Seq

Genomic Coordinates Forward (+)

19410470 .. 19412452

Gene Structure 1983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGATCATTGATGCTAGCAATACACATCCTTTGCTGGATGCAGTAGGTCCACATGGTGGTGGATACCAGGACATGTTAATAGATGGATTTACTTCTCCCTCAACCAGTGTTGACCCCATGTTCCCCTTCTATGAGAATAATTCTGAGTGGGATGACTTTGGTGAAGTTATAAATCCGGATGATTATGTCATAAAAGATGAAGACATGGACCATGGAGCTATGCCTGTTGGTGGTGATGTGGATGGAAAACTTGACGAAGGCTCTGCTAGTTTGATACTCGACACGAGGCCTTCAAAAGTTGTATCGACTGAATTGACGGTTCAAGTGAAGTGTTCATTGATTTATATGGACTTTGAGGGCCGTTCTGATGCAAGATCTATCAAATCAATTCTTTCCCATATGGCTCCTCTAAAGCTTGTTTTGGTTCACAGAACAGCTGAGGCCATGGAACATTTGAAGCAACACTGCTTGAAACATGTTTGCCCGCATGTTTATGCTCCTCAAATTGAAGAAACAACTGATGTCACTTCTGACTTATGTGCTTATAAGGTCCAACTGTCTGAGAAGTTAATGAGTAACGTTCTCTTTAAAAAGCTCGGAGATTACGAAATAGCTTGGGTTGATTCTGAGGCAGGAAAGACAGAAAATGAAATGCTATCTTTACAACCCCTCTCAACCCCGCCTCCACCGCATGAATCTGTCCTTGTTGGTGACTTAAAAATGGCTAATTTCAAGCAATTTCTTTCCGACGAGGGTGTTCAGTTGAATTTGCTGGTGGGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005847 GO:0005849 GO:0005911 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0019222 GO:0030054 GO:0031047 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

Beta-Casp CPSF100_C Lactamase_B_6 RMMBL

Protein Analysis

262

Amino Acids

28.84

Weight (kDa)

4.62

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMMBL	PF07521	107 - 157	1.7e-08	Zn-dependent metallo-hydrolase RNA specificity domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23880
fragaria_vesca	FvH4_5g14450 FvH4_7g29660 FvH4_7g29660
malus_domestica	MD01G1203600.v1.1 MD07G1272900.v1.1
prunus_persica	Prupe.2G296200_v2.0.a1 Prupe.2G296200_v2.0.a1
pyrus_communis	pycom01g21270 pycom01g21280 pycom07g24930
rosa_chinensis	RchiOBHm_Chr1g0377671 RchiOBHm_Chr1g0377681 RchiOBHm_Chr1g0379161 RchiOBHm_Chr1g0379331
rosa_laevigata	RLG00000026506 RLG00000026773
rosa_multiflora	Rmu_sc0002832.1_g000015
rosa_roxburghii	Rroxscaffold_4G00281130
rosa_rugosa	Rorug01G0404200 Rorug01G0404300
rosa_samantha	Rh1AG428300 Rh1BG381000 Rh1CG000300 Rh1CG395000 Rh1DG412000
rosa_wichuraiana	Rw1G037040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	170, 546
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	3 cut(s)	485, 680, 689
AclI	AACGTT	1 cut(s)	579
AcsI	RAATTY	1 cut(s)	766
AdeI	CACNNNGTG	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	56, 230
AflIII	ACRYGT	2 cut(s)	72, 475
AgsI	TTSAA	7 cut(s)	294, 323, 457, 472, 509, 733, 766
AjnI	CCWGG	1 cut(s)	66
AluBI	AGCT	5 cut(s)	218, 415, 437, 595, 614
AluI	AGCT	5 cut(s)	218, 415, 437, 595, 614
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	3 cut(s)	287, 358, 441
ApoI	RAATTY	1 cut(s)	766
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	4 cut(s)	47, 208, 358, 550
AsuHPI	GGTGA	3 cut(s)	173, 245, 722
AsuNHI	GCTAGC	1 cut(s)	14
AvaII	GGWCC	3 cut(s)	47, 208, 550
BauI	CACGAG	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	438
BccI	CCATC	2 cut(s)	77, 236
BceAI	ACGGC	1 cut(s)	345
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	56
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	2 cut(s)	15, 267
BfoI	RGCGCY	1 cut(s)	784
BfuI	GTATCC	1 cut(s)	56
BglII	AGATCT	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	3 cut(s)	47, 208, 550
BmgT120I	GGNCC	4 cut(s)	47, 208, 358, 550
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	2 cut(s)	28, 358
BmtI	GCTAGC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	211, 444
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	667, 697
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 230
Bse1I	ACTGG	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	68
BseDI	CCNNGG	2 cut(s)	211, 444
BseGI	GGATG	5 cut(s)	25, 43, 157, 184, 247
BseLI	CCNNNNNNNGG	2 cut(s)	56, 230
BseMII	CTCAG	4 cut(s)	135, 429, 552, 618
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	2 cut(s)	396, 489
BshFI	GGCC	3 cut(s)	289, 360, 443
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	56, 230
BsnI	GGCC	3 cut(s)	289, 360, 443
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	3, 374
Bsp19I	CCATGG	2 cut(s)	211, 444
BspACI	CCGC	3 cut(s)	485, 680, 689
BspANI	GGCC	3 cut(s)	289, 360, 443
BspCNI	CTCAG	4 cut(s)	136, 430, 553, 619
BspEI	TCCGGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	405
BspOI	GCTAGC	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	211, 444
BssMI	GATC	2 cut(s)	3, 374
BssSI	CACGAG	1 cut(s)	283
BssT1I	CCWWGG	2 cut(s)	211, 444
Bst2BI	CACGAG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	2 cut(s)	319, 558
BstC8I	GCNNGC	2 cut(s)	16, 485
BstDEI	CTNAG	4 cut(s)	144, 438, 561, 627
BstDSI	CCRYGG	2 cut(s)	211, 444
BstF5I	GGATG	5 cut(s)	25, 43, 157, 184, 247
BstH2I	RGCGCY	1 cut(s)	784
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	2 cut(s)	6, 377
BstMBI	GATC	2 cut(s)	3, 374
BstMWI	GCNNNNNNNGC	2 cut(s)	688, 778
BstNI	CCWGG	1 cut(s)	68
BstNSI	RCATGY	3 cut(s)	76, 479, 491
BstSCI	CCNGG	1 cut(s)	66
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	289, 360, 443
BtgI	CCRYGG	2 cut(s)	211, 444
BtsCI	GGATG	5 cut(s)	25, 43, 157, 184, 247
BtsI	GCAGTG	1 cut(s)	463
BtsIMutI	CAGTG	2 cut(s)	112, 463
Cac8I	GCNNGC	2 cut(s)	16, 485
CfoI	GCGC	1 cut(s)	783
Cfr13I	GGNCC	4 cut(s)	47, 208, 358, 550
CviAII	CATG	9 cut(s)	53, 73, 118, 205, 212, 445, 476, 488, 692
DdeI	CTNAG	4 cut(s)	144, 438, 561, 627
DpnI	GATC	2 cut(s)	5, 376
DpnII	GATC	2 cut(s)	3, 374
DraI	TTTAAA	1 cut(s)	589
DraIII	CACNNNGTG	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	211, 444
Eco147I	AGGCCT	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	47, 208, 550
EcoRII	CCWGG	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	211, 444
ErhI	CCWWGG	2 cut(s)	211, 444
FaeI	CATG	9 cut(s)	56, 76, 121, 208, 215, 448, 479, 491, 695
FatI	CATG	9 cut(s)	52, 72, 117, 204, 211, 444, 475, 487, 691
FauI	CCCGC	2 cut(s)	492, 687
FauNDI	CATATG	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	5 cut(s)	12, 50, 164, 191, 254
FspBI	CTAG	2 cut(s)	15, 267
GlaI	GCGC	1 cut(s)	782
HaeII	RGCGCY	1 cut(s)	784
HaeIII	GGCC	3 cut(s)	289, 360, 443
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	783
Hin1II	CATG	9 cut(s)	56, 76, 121, 208, 215, 448, 479, 491, 695
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	2 cut(s)	623, 695
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	3 cut(s)	173, 245, 722
Hpy166II	GTNNAC	3 cut(s)	50, 112, 427
Hpy188I	TCNGA	7 cut(s)	145, 367, 532, 562, 599, 628, 748
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	3 cut(s)	50, 112, 427
Hpy99I	CGWCG	1 cut(s)	752
HpyAV	CCTTC	3 cut(s)	136, 251, 300
HpyCH4III	ACNGT	2 cut(s)	319, 558
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	2 cut(s)	41, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	688, 778
HpyF3I	CTNAG	4 cut(s)	144, 438, 561, 627
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	9 cut(s)	56, 76, 121, 208, 215, 448, 479, 491, 695
HspAI	GCGC	1 cut(s)	781
Kpn2I	TCCGGA	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 374
LmnI	GCTCC	3 cut(s)	215, 409, 502
LpnPI	CCDG	8 cut(s)	20, 53, 80, 118, 189, 237, 618, 758
LweI	GCATC	2 cut(s)	28, 358
MaeI	CTAG	2 cut(s)	15, 267
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	523, 575, 710
MalI	GATC	2 cut(s)	5, 376
MboI	GATC	2 cut(s)	3, 374
MboII	GAAGA	2 cut(s)	212, 521
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	7 cut(s)	139, 311, 387, 504, 727, 737, 766
MmeI	TCCRAC	2 cut(s)	577, 771
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	4 cut(s)	77, 569, 588, 716
MslI	CAYNNNNRTG	2 cut(s)	57, 492
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	688, 778
NcoI	CCATGG	2 cut(s)	211, 444
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	2 cut(s)	3, 374
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	9 cut(s)	56, 76, 121, 208, 215, 448, 479, 491, 695
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	2 cut(s)	523, 710
NspI	RCATGY	3 cut(s)	76, 479, 491
PceI	AGGCCT	1 cut(s)	289
PciI	ACATGT	2 cut(s)	72, 475
PcsI	WCGNNNNNNNCGW	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	623, 695
PflMI	CCANNNNNTGG	1 cut(s)	56
PscI	ACATGT	2 cut(s)	72, 475
PsiI	TTATAA	2 cut(s)	170, 546
Psp1406I	AACGTT	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	4 cut(s)	47, 208, 358, 550
PsuI	RGATCY	1 cut(s)	374
PvuII	CAGCTG	1 cut(s)	437
RseI	CAYNNNNRTG	2 cut(s)	57, 492
SaqAI	TTAA	4 cut(s)	77, 569, 588, 716
Sau3AI	GATC	2 cut(s)	3, 374
Sau96I	GGNCC	4 cut(s)	47, 208, 358, 550
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	8 cut(s)	49, 220, 417, 439, 552, 582, 597, 616
SfaNI	GCATC	2 cut(s)	28, 358
SinI	GGWCC	3 cut(s)	47, 208, 550
SmiMI	CAYNNNNRTG	2 cut(s)	57, 492
Sse9I	AATT	7 cut(s)	139, 311, 387, 504, 727, 737, 766
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	3 cut(s)	485, 680, 689
SspMI	CTAG	2 cut(s)	15, 267
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	2 cut(s)	211, 444
TaaI	ACNGT	2 cut(s)	319, 558
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	2 cut(s)	279, 305
TasI	AATT	7 cut(s)	139, 311, 387, 504, 727, 737, 766
TfiI	GAWTC	2 cut(s)	623, 695
Tru1I	TTAA	4 cut(s)	77, 569, 588, 716
Tru9I	TTAA	4 cut(s)	77, 569, 588, 716
TscAI	CASTG	2 cut(s)	112, 470
TseFI	GTSAC	2 cut(s)	523, 710
Tsp45I	GTSAC	2 cut(s)	523, 710
TspDTI	ATGAA	4 cut(s)	213, 324, 663, 708
TspRI	CASTG	2 cut(s)	112, 470
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	3 cut(s)	47, 208, 550
XapI	RAATTY	1 cut(s)	766
XceI	RCATGY	3 cut(s)	76, 479, 491
XspI	CTAG	2 cut(s)	15, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.