Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Forward (+)

8090724 .. 8092675

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGACAACGGGTGGGTTTTGCAGATTCTTTGCAAAGATGAATGATTTGATGACCAAATCTTTCTTAAGTTATGTGGAACTGAAGAAACAGGCGCAGAAGGACCTTGAAGCGGATCTTGATGTCGAAGCAGGCGCAGGCAAACTCAACCCGTCCGACCAAGAAAACCTCTCTCAGTTCTTCCAGGAAGTCGGAGCAATCAAGGCCGACATGGAAGAGATCACCAATCTCTTGCACGATCTCCAGAGCCTGAACGCTGAGGCAAAGTCCACTCACAGTGCCAAGATTCTCCGCGGGCTTAGAGACCGGATGGAATCTGACATGGTCGCAGTGCTTCGAAAAGCGAGGATTGTCAAGGCGAGGCTTGAAGCGCTTGATCAGTCAAATGCGACCAACAGAAAAATGTCCGATGCGTATAAGGAAGGAAGCACTGTGGACCGGACTAGAATGTCCATCACTGGTGGCTTGAGAGTCAAGCTAAGGGACCTGATGGACAATTTTCAATCTCTGAGAGGGAAGATTGTTTCGGATCATAAGGAAGATCTGAAGAGGAGGTACTACAGCGCAACGGGCGACTTGCCATCCGATGAGATGATCGAAAAGATAATTTCCGGAAGCTTGAAAGTTGAATTGTTCGAAGGGAAGACGGAACTGGATATTGGGAACAAAGTCCGACACGAGGCAGTGATGGATATCCAGAGAAGTCTGACAAATCTTCATCAGGTGTTTCTCGACATGGCTGTTCTGGTTGAGGCACAAGGCGAAGACATTGAAAATATCGAAGACAATGTGGCGAATGCCGGTTATTTCATCAGTGGTGGCACAAACAGTCTTCACTATGCCAGCCAGATGAAGAAGAAGAACAAGAAGTGGGTTTACTGGGTGTGGGCTGTGGGACTGATTATACTTCTGGTTTGCATTATTTCGATGTTCGCCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

313

Amino Acids

35.17

Weight (kDa)

6.35

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	54 - 211	1.3e-43	Syntaxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	445
AccII	CGCG	1 cut(s)	291
AccIII	TCCGGA	1 cut(s)	608
AciI	CCGC	3 cut(s)	110, 289, 291
AclWI	GGATC	2 cut(s)	120, 534
AcuI	CTGAAG	2 cut(s)	101, 563
AfaI	GTAC	1 cut(s)	554
AfeI	AGCGCT	1 cut(s)	369
AfiI	CCNNNNNNNGG	2 cut(s)	109, 676
AflII	CTTAAG	1 cut(s)	64
AgsI	TTSAA	6 cut(s)	107, 365, 500, 619, 626, 770
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	2 cut(s)	475, 615
AluI	AGCT	2 cut(s)	475, 615
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	120, 534
AlwNI	CAGNNNCTG	1 cut(s)	247
Aor13HI	TCCGGA	1 cut(s)	608
Aor51HI	AGCGCT	1 cut(s)	369
AoxI	GGCC	1 cut(s)	201
AspLEI	GCGC	4 cut(s)	94, 134, 370, 563
AspS9I	GGNCC	3 cut(s)	100, 433, 481
AsuHPI	GGTGA	1 cut(s)	211
AsuII	TTCGAA	2 cut(s)	334, 633
AvaII	GGWCC	3 cut(s)	100, 433, 481
BarI	GAAGNNNNNNTAC	4 cut(s)	536, 568, 857, 889
BauI	CACGAG	1 cut(s)	674
BbsI	GAAGAC	4 cut(s)	647, 768, 786, 821
BbvCI	CCTCAGC	1 cut(s)	255
BccI	CCATC	5 cut(s)	301, 458, 481, 586, 679
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	556
BfoI	RGCGCY	1 cut(s)	371
BfrI	CTTAAG	1 cut(s)	64
BglII	AGATCT	1 cut(s)	538
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	3 cut(s)	100, 433, 481
BmgT120I	GGNCC	3 cut(s)	100, 433, 481
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	886
BmsI	GCATC	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	886
BpiI	GAAGAC	4 cut(s)	647, 768, 786, 821
BpmI	CTGGAG	1 cut(s)	224
Bpu10I	CCTNAGC	2 cut(s)	255, 476
Bpu14I	TTCGAA	2 cut(s)	334, 633
BpuEI	CTTGAG	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	689
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	3 cut(s)	303, 435, 608
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 676
Bse118I	RCCGGY	1 cut(s)	797
Bse1I	ACTGG	3 cut(s)	460, 654, 881
Bse8I	GATNNNNATC	1 cut(s)	689
BseAI	TCCGGA	1 cut(s)	608
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	2 cut(s)	312, 578
BseJI	GATNNNNATC	1 cut(s)	689
BseLI	CCNNNNNNNGG	2 cut(s)	109, 676
BseMII	CTCAG	3 cut(s)	185, 246, 497
BseNI	ACTGG	3 cut(s)	460, 654, 881
BseRI	GAGGAG	1 cut(s)	562
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	203
BsiSI	CCGG	4 cut(s)	304, 436, 609, 798
BslFI	GGGAC	2 cut(s)	494, 906
BslI	CCNNNNNNNGG	2 cut(s)	109, 676
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	2 cut(s)	494, 906
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	1 cut(s)	203
Bso31I	GGTCTC	1 cut(s)	294
Bsp119I	TTCGAA	2 cut(s)	334, 633
Bsp13I	TCCGGA	1 cut(s)	608
Bsp143I	GATC	7 cut(s)	112, 216, 235, 373, 526, 538, 591
BspACI	CCGC	3 cut(s)	110, 289, 291
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	3 cut(s)	184, 247, 498
BspEI	TCCGGA	1 cut(s)	608
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	482
BspPI	GGATC	2 cut(s)	120, 534
BspT104I	TTCGAA	2 cut(s)	334, 633
BspTI	CTTAAG	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	797
BsrI	ACTGG	3 cut(s)	460, 654, 881
BssAI	RCCGGY	1 cut(s)	797
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	7 cut(s)	112, 216, 235, 373, 526, 538, 591
BssSI	CACGAG	1 cut(s)	674
Bst2BI	CACGAG	1 cut(s)	674
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	3 cut(s)	275, 430, 827
Bst6I	CTCTTC	2 cut(s)	207, 539
BstAFI	CTTAAG	1 cut(s)	64
BstBI	TTCGAA	2 cut(s)	334, 633
BstC8I	GCNNGC	4 cut(s)	130, 136, 293, 841
BstDEI	CTNAG	5 cut(s)	171, 255, 296, 476, 506
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	312, 578
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	4 cut(s)	94, 134, 370, 563
BstKTI	GATC	7 cut(s)	115, 219, 238, 376, 529, 541, 594
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	7 cut(s)	112, 216, 235, 373, 526, 538, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 367, 567
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	556
BstUI	CGCG	1 cut(s)	291
BstV2I	GAAGAC	4 cut(s)	647, 768, 786, 821
BstX2I	RGATCY	2 cut(s)	112, 538
BstYI	RGATCY	2 cut(s)	112, 538
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	312, 578
BtsI	GCAGTG	2 cut(s)	333, 687
BtsIMutI	CAGTG	6 cut(s)	280, 333, 426, 453, 687, 817
Cac8I	GCNNGC	4 cut(s)	130, 136, 293, 841
CaiI	CAGNNNCTG	1 cut(s)	247
CfoI	GCGC	4 cut(s)	94, 134, 370, 563
Cfr10I	RCCGGY	1 cut(s)	797
Cfr13I	GGNCC	3 cut(s)	100, 433, 481
Cfr42I	CCGCGG	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	3 cut(s)	208, 319, 733
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	5 cut(s)	171, 255, 296, 476, 506
DpnI	GATC	7 cut(s)	114, 218, 237, 375, 528, 540, 593
DpnII	GATC	7 cut(s)	112, 216, 235, 373, 526, 538, 591
DrdI	GACNNNNNNGTC	1 cut(s)	445
DseDI	GACNNNNNNGTC	1 cut(s)	445
Eam1104I	CTCTTC	2 cut(s)	207, 539
EarI	CTCTTC	2 cut(s)	207, 539
Eco31I	GGTCTC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	691
Eco47I	GGWCC	3 cut(s)	100, 433, 481
Eco47III	AGCGCT	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	101, 563
EcoO109I	RGGNCCY	2 cut(s)	100, 481
EcoRII	CCWGG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	691
FaeI	CATG	3 cut(s)	211, 322, 736
FaiI	YATR	8 cut(s)	72, 209, 320, 414, 531, 734, 837, 902
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	2 cut(s)	494, 906
FatI	CATG	3 cut(s)	207, 318, 732
FauI	CCCGC	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	373
FokI	GGATG	2 cut(s)	319, 565
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	4 cut(s)	93, 133, 369, 562
GsuI	CTGGAG	1 cut(s)	224
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	4 cut(s)	304, 436, 609, 798
HhaI	GCGC	4 cut(s)	94, 134, 370, 563
Hin1II	CATG	3 cut(s)	211, 322, 736
Hin6I	GCGC	4 cut(s)	92, 132, 368, 561
HinP1I	GCGC	4 cut(s)	92, 132, 368, 561
HindIII	AAGCTT	1 cut(s)	613
HinfI	GANTC	4 cut(s)	24, 283, 311, 468
HpaII	CCGG	4 cut(s)	304, 436, 609, 798
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	3 cut(s)	267, 433, 874
Hpy188III	TCNNGA	5 cut(s)	116, 241, 609, 694, 728
Hpy8I	GTNNAC	3 cut(s)	267, 433, 874
HpyAV	CCTTC	3 cut(s)	91, 413, 629
HpyCH4III	ACNGT	3 cut(s)	275, 430, 827
HpyCH4V	TGCA	4 cut(s)	21, 32, 232, 915
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 367, 567
HpyF3I	CTNAG	5 cut(s)	171, 255, 296, 476, 506
Hsp92II	CATG	3 cut(s)	211, 322, 736
HspAI	GCGC	4 cut(s)	92, 132, 368, 561
Kpn2I	TCCGGA	1 cut(s)	608
Ksp22I	TGATCA	1 cut(s)	373
KspI	CCGCGG	1 cut(s)	292
Kzo9I	GATC	7 cut(s)	112, 216, 235, 373, 526, 538, 591
LmnI	GCTCC	1 cut(s)	191
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	441
MalI	GATC	7 cut(s)	114, 218, 237, 375, 528, 540, 593
MboI	GATC	7 cut(s)	112, 216, 235, 373, 526, 538, 591
MflI	RGATCY	2 cut(s)	112, 538
MluCI	AATT	3 cut(s)	493, 603, 626
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	3 cut(s)	169, 177, 694
MnlI	CCTC	9 cut(s)	176, 250, 336, 351, 503, 540, 543, 670, 742
MroI	TCCGGA	1 cut(s)	608
MseI	TTAA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	291
MspCI	CTTAAG	1 cut(s)	64
MspI	CCGG	4 cut(s)	304, 436, 609, 798
MspR9I	CCNGG	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	200, 367, 567
NdeII	GATC	7 cut(s)	112, 216, 235, 373, 526, 538, 591
NlaIII	CATG	3 cut(s)	211, 322, 736
NlaIV	GGNNCC	1 cut(s)	482
NspV	TTCGAA	2 cut(s)	334, 633
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	3 cut(s)	24, 283, 311
PflFI	GACNNNGTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	180
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PpuMI	RGGWCCY	2 cut(s)	100, 481
Psp5II	RGGWCCY	2 cut(s)	100, 481
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	482
PspPI	GGNCC	3 cut(s)	100, 433, 481
PspPPI	RGGWCCY	2 cut(s)	100, 481
PstNI	CAGNNNCTG	1 cut(s)	247
PsuI	RGATCY	2 cut(s)	112, 538
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SacII	CCGCGG	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	7 cut(s)	112, 216, 235, 373, 526, 538, 591
Sau96I	GGNCC	3 cut(s)	100, 433, 481
SchI	GAGTC	1 cut(s)	477
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	7 cut(s)	105, 168, 477, 486, 554, 617, 723
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	556
Sfr303I	CCGCGG	1 cut(s)	292
SfuI	TTCGAA	2 cut(s)	334, 633
SgrBI	CCGCGG	1 cut(s)	292
SinI	GGWCC	3 cut(s)	100, 433, 481
SmlI	CTYRAG	2 cut(s)	64, 463
SmoI	CTYRAG	2 cut(s)	64, 463
Sse9I	AATT	3 cut(s)	493, 603, 626
SsiI	CCGC	3 cut(s)	110, 289, 291
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	275, 430, 827
TaqI	TCGA	7 cut(s)	123, 334, 594, 633, 729, 777, 923
TasI	AATT	3 cut(s)	493, 603, 626
TfiI	GAWTC	3 cut(s)	24, 283, 311
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	6 cut(s)	280, 333, 433, 460, 687, 817
TspDTI	ATGAA	4 cut(s)	53, 704, 796, 863
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	6 cut(s)	280, 333, 433, 460, 687, 817
Tth111I	GACNNNGTC	1 cut(s)	320
Vha464I	CTTAAG	1 cut(s)	64
VpaK11BI	GGWCC	3 cut(s)	100, 433, 481
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.