pycom02g11480

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0008798
Physical Location & Seq
Reverse (-)
8093100 .. 8096186
3087 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
ATGAAACGAAACGGGTTAAATGATACTTCATGTTGGAATATCCGAATTTCTATATTTGGTCCCTGGGCTTGGCGGGTGGTGGCGTGGTACCCGACGGTCACAGAAGAAGATTTGAGTATATGGAGTGGAACCACACAAACCAACCCGCTCGACTCGACGAAGAAGATGGCGATGGCGATGGTTTCTATGCTCGTTTCGCTCCCCACCCTCACTCCTCCCAATTCCCGCCGAGTCAACCGGTTTTGGCAAACAACGCCAAAAACGTCGTCATCCGTGATGGCTGTTGCAAGCGGCGCCGGAAGCAAAGTGAGCGCTACTGCAGGGGTGAAATTTGCAGAGGGAGAAGAGAAATTGCCCAAGGTCGTTTTGACCAGCGCCGGCGGCAGTGAGGCGGATGTATATTTATATGGCGGTGTTATTACTTCTTGGAAAGTCCCAAATGGGAGGGACCTGCTTTTTGTTCGACCTGATGCGGTGTTCAACAAGAAGAAACCAATCAGTGGAGGCGTTCCACATTGTTTTCCACAGTTTGGACCAGGCCCTATGCAGCAGCACGGATTTGCAAGAAATCTGGACTGGTCCGTCATTGATTCTGAAAATGTGCAAGGAGATCGATCTACCATAACTTTAGAACTAAAGGATGGTGAATACAGTCGCTCAATGTGGGATTTCAGCTTTCAAGCTTTGTACAAGGTCACTTTGCAACCAAAGAGCCTTTCCACCGAACTTGTAATTAAAAATACAGACAGCAAGCCATTTTCATTCAGCACCGCATTGCATACATACTTCCGGGCTGCTGTACAAGGGGCATCAGTTAAAGGTTTGAAAGGCTGCAAAACACTTAATAAAGATCCCGATCCCAAGAATCCACTGGAGGGCAAGGAAGAAAGGGATGGGATCACTTTTCCTGGATTCGTGGATTGCGTATACCTGGATGCCCCTGATGAGTTACATCTTGATAATGGCTTAGATGATCTAATATCTATCAAGAACACAAATTGGACAGATGCTGTTTTGTGGAACCCATATCTGACAATGGAAGCATGCTACAAAGATTTTGTTTGTGTTGAAAATGCAAAGATTGGAAACGTACAGCTGGAGCCTGGTAATACGTGGATTGCTACGCAACATCTTAGCATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

382

Amino Acids

42.1

Weight (kDa)

6.54

Isoelectric Point (pI)

26.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 120 - 378 4.5e-44 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 459
Acc65I GGTACC 1 cut(s) 87
AccB1I GGYRCC 2 cut(s) 87, 293
AccB7I CCANNNNNTGG 2 cut(s) 500, 530
AccBSI CCGCTC 1 cut(s) 148
AccI GTMKAC 1 cut(s) 927
AciI CCGC 9 cut(s) 73, 146, 226, 291, 381, 392, 411, 473, 771
AclWI GGATC 3 cut(s) 845, 851, 905
AcsI RAATTY 2 cut(s) 45, 329
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 4 cut(s) 89, 689, 801, 1092
AfeI AGCGCT 1 cut(s) 313
AfiI CCNNNNNNNGG 4 cut(s) 69, 500, 530, 875
AgeI ACCGGT 1 cut(s) 237
AgsI TTSAA 4 cut(s) 481, 680, 826, 1070
AjnI CCWGG 5 cut(s) 62, 535, 907, 930, 1102
AjuI GAANNNNNNNTTGG 2 cut(s) 700, 732
AluBI AGCT 3 cut(s) 675, 683, 1096
AluI AGCT 3 cut(s) 675, 683, 1096
AlwI GGATC 3 cut(s) 845, 851, 905
AlwNI CAGNNNCTG 1 cut(s) 1010
Aor51HI AGCGCT 1 cut(s) 313
AoxI GGCC 1 cut(s) 538
ApeKI GCWGC 4 cut(s) 547, 550, 794, 831
ApoI RAATTY 2 cut(s) 45, 329
ArsI GACNNNNNNTTYG 4 cut(s) 251, 283, 440, 472
AseI ATTAAT 1 cut(s) 1140
AsiGI ACCGGT 1 cut(s) 237
Asp718I GGTACC 1 cut(s) 87
AspLEI GCGC 3 cut(s) 296, 314, 377
AspS9I GGNCC 5 cut(s) 59, 448, 533, 539, 579
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 2 cut(s) 337, 656
AvaII GGWCC 4 cut(s) 59, 448, 533, 579
BanI GGYRCC 2 cut(s) 87, 293
BbvI GCAGC 4 cut(s) 559, 562, 781, 818
BccI CCATC 6 cut(s) 160, 166, 172, 271, 635, 887
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 5 cut(s) 64, 537, 909, 932, 1104
BcnI CCSGG 1 cut(s) 791
BfmI CTRYAG 1 cut(s) 318
BfoI RGCGCY 3 cut(s) 297, 315, 378
BfuAI ACCTGC 1 cut(s) 459
BisI GCNGC 6 cut(s) 292, 382, 548, 551, 795, 832
BlsI GCNGC 6 cut(s) 293, 383, 549, 552, 796, 833
Bme1390I CCNGG 6 cut(s) 64, 537, 791, 909, 932, 1104
Bme18I GGWCC 4 cut(s) 59, 448, 533, 579
BmgT120I GGNCC 5 cut(s) 59, 448, 533, 539, 579
BmiI GGNNCC 7 cut(s) 61, 89, 130, 295, 449, 1022, 1101
BmrFI CCNGG 6 cut(s) 64, 537, 791, 909, 932, 1104
BmsI GCATC 4 cut(s) 460, 818, 925, 997
BpmI CTGGAG 2 cut(s) 893, 1118
BpuMI CCSGG 1 cut(s) 791
Bsa29I ATCGAT 1 cut(s) 613
BsaAI YACGTR 1 cut(s) 1113
BsaBI GATNNNNATC 1 cut(s) 855
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 3 cut(s) 62, 63, 357
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 500, 530, 875
Bse118I RCCGGY 2 cut(s) 237, 377
Bse1I ACTGG 2 cut(s) 581, 876
Bse3DI GCAATG 1 cut(s) 773
Bse8I GATNNNNATC 1 cut(s) 855
BseBI CCWGG 5 cut(s) 64, 537, 909, 932, 1104
BseCI ATCGAT 1 cut(s) 613
BseDI CCNNGG 3 cut(s) 62, 63, 357
BseGI GGATG 5 cut(s) 269, 400, 646, 898, 940
BseJI GATNNNNATC 1 cut(s) 855
BseLI CCNNNNNNNGG 4 cut(s) 69, 500, 530, 875
BseMI GCAATG 1 cut(s) 773
BseNI ACTGG 2 cut(s) 581, 876
BseRI GAGGAG 1 cut(s) 204
BseXI GCAGC 4 cut(s) 559, 562, 781, 818
BshFI GGCC 1 cut(s) 540
BshNI GGYRCC 2 cut(s) 87, 293
BshTI ACCGGT 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 613
BsiSI CCGG 4 cut(s) 238, 297, 378, 790
BslFI GGGAC 3 cut(s) 45, 419, 461
BslI CCNNNNNNNGG 4 cut(s) 69, 500, 530, 875
BsmFI GGGAC 3 cut(s) 45, 419, 461
BsnI GGCC 1 cut(s) 540
Bsp1407I TGTACA 2 cut(s) 687, 799
Bsp143I GATC 6 cut(s) 610, 614, 850, 856, 897, 973
BspACI CCGC 9 cut(s) 73, 146, 226, 291, 381, 392, 411, 473, 771
BspANI GGCC 1 cut(s) 540
BspDI ATCGAT 1 cut(s) 613
BspLI GGNNCC 7 cut(s) 61, 89, 130, 295, 449, 1022, 1101
BspMAI CTGCAG 1 cut(s) 322
BspMI ACCTGC 1 cut(s) 459
BspPI GGATC 3 cut(s) 845, 851, 905
BspT107I GGYRCC 2 cut(s) 87, 293
BsrBI CCGCTC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 773
BsrFI RCCGGY 2 cut(s) 237, 377
BsrGI TGTACA 2 cut(s) 687, 799
BsrI ACTGG 2 cut(s) 581, 876
BssAI RCCGGY 2 cut(s) 237, 377
BssECI CCNNGG 3 cut(s) 62, 63, 357
BssMI GATC 6 cut(s) 610, 614, 850, 856, 897, 973
BssNAI GTATAC 1 cut(s) 928
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 357
Bst1107I GTATAC 1 cut(s) 928
Bst2UI CCWGG 5 cut(s) 64, 537, 909, 932, 1104
Bst4CI ACNGT 3 cut(s) 97, 528, 653
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 1 cut(s) 294
BstAUI TGTACA 2 cut(s) 687, 799
BstBAI YACGTR 1 cut(s) 1113
BstC8I GCNNGC 4 cut(s) 289, 379, 752, 1045
BstDEI CTNAG 2 cut(s) 967, 1133
BstF5I GGATG 5 cut(s) 269, 400, 646, 898, 940
BstH2I RGCGCY 3 cut(s) 297, 315, 378
BstHHI GCGC 3 cut(s) 296, 314, 377
BstKTI GATC 6 cut(s) 613, 617, 853, 859, 900, 976
BstMBI GATC 6 cut(s) 610, 614, 850, 856, 897, 973
BstMWI GCNNNNNNNGC 6 cut(s) 196, 253, 293, 300, 309, 381
BstNI CCWGG 5 cut(s) 64, 537, 909, 932, 1104
BstNSI RCATGY 1 cut(s) 1047
BstSCI CCNGG 6 cut(s) 62, 535, 789, 907, 930, 1102
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 4 cut(s) 559, 562, 781, 818
BstX2I RGATCY 1 cut(s) 850
BstYI RGATCY 1 cut(s) 850
BstZ17I GTATAC 1 cut(s) 928
Bsu15I ATCGAT 1 cut(s) 613
BsuRI GGCC 1 cut(s) 540
BsuTUI ATCGAT 1 cut(s) 613
BtgZI GCGATG 2 cut(s) 185, 191
BtsCI GGATG 5 cut(s) 269, 400, 646, 898, 940
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 3 cut(s) 391, 505, 869
BveI ACCTGC 1 cut(s) 459
Cac8I GCNNGC 4 cut(s) 289, 379, 752, 1045
CaiI CAGNNNCTG 1 cut(s) 1010
CfoI GCGC 3 cut(s) 296, 314, 377
Cfr10I RCCGGY 2 cut(s) 237, 377
Cfr13I GGNCC 5 cut(s) 59, 448, 533, 539, 579
ClaI ATCGAT 1 cut(s) 613
Csp6I GTAC 4 cut(s) 88, 688, 800, 1091
CspAI ACCGGT 1 cut(s) 237
CspCI CAANNNNNGTGG 2 cut(s) 709, 744
CviAII CATG 2 cut(s) 30, 1044
CviQI GTAC 4 cut(s) 88, 688, 800, 1091
DdeI CTNAG 2 cut(s) 967, 1133
DinI GGCGCC 1 cut(s) 295
DpnI GATC 6 cut(s) 612, 616, 852, 858, 899, 975
DpnII GATC 6 cut(s) 610, 614, 850, 856, 897, 973
DrdI GACNNNNNNGTC 1 cut(s) 581
DseDI GACNNNNNNGTC 1 cut(s) 581
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 357
Eco47I GGWCC 4 cut(s) 59, 448, 533, 579
Eco47III AGCGCT 1 cut(s) 313
EcoO109I RGGNCCY 2 cut(s) 448, 539
EcoRII CCWGG 5 cut(s) 62, 535, 907, 930, 1102
EcoT14I CCWWGG 1 cut(s) 357
EgeI GGCGCC 1 cut(s) 295
EheI GGCGCC 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 2 cut(s) 33, 1047
FaqI GGGAC 3 cut(s) 45, 419, 461
FatI CATG 2 cut(s) 29, 1043
FauI CCCGC 3 cut(s) 66, 153, 233
FblI GTMKAC 1 cut(s) 927
Fnu4HI GCNGC 6 cut(s) 292, 382, 548, 551, 795, 832
FokI GGATG 5 cut(s) 256, 407, 653, 905, 947
Fsp4HI GCNGC 6 cut(s) 292, 382, 548, 551, 795, 832
GlaI GCGC 3 cut(s) 295, 313, 376
GluI GCNGC 6 cut(s) 292, 382, 548, 551, 795, 832
GsuI CTGGAG 2 cut(s) 893, 1118
HaeII RGCGCY 3 cut(s) 297, 315, 378
HaeIII GGCC 1 cut(s) 540
HapII CCGG 4 cut(s) 238, 297, 378, 790
HhaI GCGC 3 cut(s) 296, 314, 377
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 2 cut(s) 33, 1047
Hin6I GCGC 3 cut(s) 294, 312, 375
HinP1I GCGC 3 cut(s) 294, 312, 375
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 681
HinfI GANTC 5 cut(s) 152, 231, 590, 865, 912
HpaII CCGG 4 cut(s) 238, 297, 378, 790
HphI GGTGA 2 cut(s) 337, 656
Hpy166II GTNNAC 2 cut(s) 235, 928
Hpy188I TCNGA 3 cut(s) 44, 595, 1032
Hpy188III TCNNGA 4 cut(s) 572, 854, 956, 988
Hpy8I GTNNAC 2 cut(s) 235, 928
Hpy99I CGWCG 3 cut(s) 97, 160, 268
HpyCH4III ACNGT 3 cut(s) 97, 528, 653
HpyCH4IV ACGT 3 cut(s) 263, 1089, 1112
HpyF10VI GCNNNNNNNGC 6 cut(s) 196, 253, 293, 300, 309, 381
HpyF3I CTNAG 2 cut(s) 967, 1133
HpySE526I ACGT 3 cut(s) 263, 1089, 1112
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 2 cut(s) 33, 1047
HspAI GCGC 3 cut(s) 294, 312, 375
KasI GGCGCC 1 cut(s) 293
KpnI GGTACC 1 cut(s) 91
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Kzo9I GATC 6 cut(s) 610, 614, 850, 856, 897, 973
LmnI GCTCC 2 cut(s) 204, 1099
Lsp1109I GCAGC 4 cut(s) 559, 562, 781, 818
LweI GCATC 4 cut(s) 460, 818, 925, 997
MaeII ACGT 3 cut(s) 263, 1089, 1112
MaeIII GTNAC 3 cut(s) 97, 694, 948
MalI GATC 6 cut(s) 612, 616, 852, 858, 899, 975
MbiI CCGCTC 1 cut(s) 148
MboI GATC 6 cut(s) 610, 614, 850, 856, 897, 973
MboII GAAGA 7 cut(s) 116, 119, 172, 175, 356, 499, 896
MflI RGATCY 1 cut(s) 850
MluCI AATT 7 cut(s) 45, 220, 329, 350, 732, 997, 1141
Mly113I GGCGCC 1 cut(s) 294
MlyI GAGTC 2 cut(s) 146, 240
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 7 cut(s) 218, 225, 331, 382, 438, 497, 868
MreI CGCCGGCG 1 cut(s) 377
MroNI GCCGGC 1 cut(s) 377
MseI TTAA 5 cut(s) 17, 735, 816, 843, 1140
MspA1I CMGCKG 1 cut(s) 1096
MspI CCGG 4 cut(s) 238, 297, 378, 790
MspR9I CCNGG 6 cut(s) 64, 537, 791, 909, 932, 1104
MvaI CCWGG 5 cut(s) 64, 537, 909, 932, 1104
MwoI GCNNNNNNNGC 6 cut(s) 196, 253, 293, 300, 309, 381
NaeI GCCGGC 1 cut(s) 379
NarI GGCGCC 1 cut(s) 294
NciI CCSGG 1 cut(s) 791
NdeII GATC 6 cut(s) 610, 614, 850, 856, 897, 973
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 2 cut(s) 33, 1047
NlaIV GGNNCC 7 cut(s) 61, 89, 130, 295, 449, 1022, 1101
NmeAIII GCCGAG 1 cut(s) 254
NmuCI GTSAC 2 cut(s) 97, 694
NspI RCATGY 1 cut(s) 1047
PaeI GCATGC 1 cut(s) 1047
PasI CCCWGGG 1 cut(s) 63
PcsI WCGNNNNNNNCGW 2 cut(s) 260, 921
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 3 cut(s) 590, 865, 912
PflMI CCANNNNNTGG 2 cut(s) 500, 530
PfoI TCCNGGA 1 cut(s) 907
PinAI ACCGGT 1 cut(s) 237
PkrI GCNGC 6 cut(s) 293, 383, 549, 552, 796, 833
PleI GAGTC 2 cut(s) 146, 239
PluTI GGCGCC 1 cut(s) 297
PpsI GAGTC 2 cut(s) 146, 239
Ppu21I YACGTR 1 cut(s) 1113
PpuMI RGGWCCY 1 cut(s) 448
PshBI ATTAAT 1 cut(s) 1140
Psp5II RGGWCCY 1 cut(s) 448
Psp6I CCWGG 5 cut(s) 62, 535, 907, 930, 1102
PspGI CCWGG 5 cut(s) 62, 535, 907, 930, 1102
PspN4I GGNNCC 7 cut(s) 61, 89, 130, 295, 449, 1022, 1101
PspPI GGNCC 5 cut(s) 59, 448, 533, 539, 579
PspPPI RGGWCCY 1 cut(s) 448
PstI CTGCAG 1 cut(s) 322
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 1 cut(s) 850
PvuII CAGCTG 1 cut(s) 1096
RsaI GTAC 4 cut(s) 89, 689, 801, 1092
RsaNI GTAC 4 cut(s) 88, 688, 800, 1091
SaqAI TTAA 5 cut(s) 17, 735, 816, 843, 1140
SatI GCNGC 6 cut(s) 292, 382, 548, 551, 795, 832
Sau3AI GATC 6 cut(s) 610, 614, 850, 856, 897, 973
Sau96I GGNCC 5 cut(s) 59, 448, 533, 539, 579
SchI GAGTC 2 cut(s) 146, 240
ScrFI CCNGG 6 cut(s) 64, 537, 791, 909, 932, 1104
SfaNI GCATC 4 cut(s) 460, 818, 925, 997
SfcI CTRYAG 1 cut(s) 318
SfoI GGCGCC 1 cut(s) 295
SgrAI CRCCGGYG 1 cut(s) 377
SinI GGWCC 4 cut(s) 59, 448, 533, 579
SphI GCATGC 1 cut(s) 1047
Sse9I AATT 7 cut(s) 45, 220, 329, 350, 732, 997, 1141
SsiI CCGC 9 cut(s) 73, 146, 226, 291, 381, 392, 411, 473, 771
SspDI GGCGCC 1 cut(s) 293
StyD4I CCNGG 6 cut(s) 62, 535, 789, 907, 930, 1102
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 3 cut(s) 97, 528, 653
TaiI ACGT 3 cut(s) 266, 1092, 1115
TaqI TCGA 4 cut(s) 150, 155, 463, 613
TasI AATT 7 cut(s) 45, 220, 329, 350, 732, 997, 1141
TatI WGTACW 2 cut(s) 687, 799
TauI GCSGC 2 cut(s) 294, 384
TfiI GAWTC 3 cut(s) 590, 865, 912
Tru1I TTAA 5 cut(s) 17, 735, 816, 843, 1140
Tru9I TTAA 5 cut(s) 17, 735, 816, 843, 1140
TscAI CASTG 3 cut(s) 391, 505, 876
TseFI GTSAC 2 cut(s) 97, 694
TseI GCWGC 4 cut(s) 547, 550, 794, 831
Tsp45I GTSAC 2 cut(s) 97, 694
TspDTI ATGAA 3 cut(s) 17, 18, 750
TspGWI ACGGA 3 cut(s) 262, 570, 571
TspRI CASTG 3 cut(s) 391, 505, 876
Van91I CCANNNNNTGG 2 cut(s) 500, 530
VpaK11BI GGWCC 4 cut(s) 59, 448, 533, 579
VspI ATTAAT 1 cut(s) 1140
XapI RAATTY 2 cut(s) 45, 329
XceI RCATGY 1 cut(s) 1047
XcmI CCANNNNNNNNNTGG 1 cut(s) 868
XmiI GTMKAC 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.