Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003099

Physical Location & Seq

Genomic Coordinates Reverse (-)

10535981 .. 10540516

Gene Structure 4536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13940.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGAAGGGACCAAGAAGGATTGTTGCCCCCCGAAGGCAAAAGTTGGCGACGGAGGATTGTTTATCTGTAGCAGACCTAGCGGTTGGGTTTATGCAAATGCACCAAAGAACACATAGTATCCTTAAAGCAGTATATATACAAACACTATATCTACCACCAACGCACCAACGCACCATGGCCTGCGACAAAGGATTTTCGAGTAGCTATTTTCTACTGAAGCCAGAAGAAGTTGGCTTCTTTGATCTGGTTCACATTCTGTTCTCCTCCAACGTTGAGGAAGGAAGGTATGCAGATTACTCTAAGAGTGAGGGCACAGTCACAGATGAAACGATCAGCTTCAGACGAAGATGGCTTATGTTTATCTCCATCTTGGCTCAAAAGTTTCTGCAACTTGTGTCAAAGCCACTCTCAGTTTTGGGGTCGGCGACTGAAATGTGTTTGAACCTTCTGTCAAGCAACCGCAATATTTTTGTGCTCATGCTCAATTCCTTCCGAGGGAAGCTGGTAAAGCCAGATAAATCATCGGCAATATTTCTGTCATTTATAGGGAATATGGACAAGCGGGTGAAGTTAGACAGTAGCATCAAACATGATGATGCCAATTACCATGCAGCACTCTCTATGATGGCTTCTAAAGCTTCTTATGAAAACAAGACCTACATTGAAACTACTGTGAATGATCACTGGAAGATGGAGTTCTTGGGATTTTATGACTTCTGGAATGACTATCAACAAAAAGCCACAACACAAGCCTTCTTGCTTTGTGATAAAACTGGTGACCGTGACACCATTGTTGTGGCCTTTAGGGGAACTGAACCTTTCGATGCCGATGCATGGTGCTCCGACTTTGACATCTCATGGTACGAGCTTTCAGCTGGGGTTGGAAAAATTCATGGTGGCTTTATGAAAGCTTTAGGCTTACAAAAGAATGTTGGTTGGCCTAAAGAAATCAAAAAAGAAGATGGGCAGCCAGCCGTAGCTTACTATGCCATTAGAGAGATGCTAAAAGAAATTTTGAGCCAAAATGATCAAGCGAGATACATTGTGACAGGGCATAGTTTGGGTGGGGCTCTAGCAATTCTGTTTCCTGCAGTTCTGGCTCTGCACAATGAGGCATGGTTATTGGAGAGGTTGCAAGGGGTGTATACATTTGGGCAGCCAAGGGTAGGAGATGAGAAATTTGGAGAGTTCATGAGAGAAAAATTGAAAGAGCATGGTATTCGATATTTTAGATTTGTTTATGGTAACGATATGGTGCCTAGGTTGCCTTATGATGACAAGGACTTAATGTTCAAGCATTTTGGGACATGCCTCTACTATAATCGGCAGTATGAAGTGAAGGTTGTTGCAGAAGAACCGAACAAGAATTACTTTTCACCACTGGGGGCAATACCAATGATGATAAATGCCTTCTGCGAGCTGATTAGAAGCTTCACTATTTCACGCACAAAGGGACCAGACTATAAAGAAGGATCTTTTCTAAGAATTTTTAGGGTCATTGGCTTGGTACTTCCAGGCGTTCCAGCTCATAGCACCCAAGATTATGTTAATGCTACCCGGTTGGGATCATCAAACGTATTCCTCCCACCCAGAAACATACCGCAAGAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005615 GO:0044421

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

538

Amino Acids

61.31

Weight (kDa)

8.69

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67050
fragaria_vesca	FvH4_1g16103 FvH4_1g16103 FvH4_1g16103 FvH4_1g16104
malus_domestica	MD02G1172900.v1.1 MD02G1173000.v1.1 MD15G1284700.v1.1 MD15G1284800.v1.1
prunus_persica	Prupe.7G132400_v2.0.a1 Prupe.7G132500_v2.0.a1 Prupe.7G132700_v2.0.a1 Prupe.7G132800_v2.0.a1
pyrus_communis	pycom02g13940 pycom15g24750 pycom15g24760
rosa_chinensis	RchiOBHm_Chr2g0105751 RchiOBHm_Chr2g0105761
rosa_laevigata	RLG00000017456 RLG00000017457
rosa_multiflora	Rmu_sc0002741.1_g000020 Rmu_sc0002741.1_g000021
rosa_roxburghii	Rroxscaffold_2G00137920 Rroxscaffold_2G00137930
rosa_rugosa	Rorug02G0130000.1 Rorug02G0130100 Rorug02G0130200
rosa_samantha	Rh2AG181400 Rh2AG181500 Rh2BG190500 Rh2BG190600 Rh2CG185600 Rh2CG185700 Rh2DG187400 Rh2DG187500
rosa_wichuraiana	Rw2G014190 Rw2G014200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1255
AccI	GTMKAC	1 cut(s)	1145
AciI	CCGC	4 cut(s)	80, 460, 562, 1601
AclI	AACGTT	1 cut(s)	270
AclWI	GGATC	2 cut(s)	1480, 1573
AcsI	RAATTY	4 cut(s)	888, 1011, 1178, 1485
AcuI	CTGAAG	2 cut(s)	236, 322
AfaI	GTAC	2 cut(s)	863, 1509
AfiI	CCNNNNNNNGG	4 cut(s)	33, 495, 834, 1166
AgsI	TTSAA	4 cut(s)	442, 665, 1207, 1294
AjnI	CCWGG	1 cut(s)	1513
AloI	GAACNNNNNNTCC	2 cut(s)	1274, 1306
Alw21I	GWGCWC	2 cut(s)	477, 842
AlwI	GGATC	2 cut(s)	1480, 1573
AoxI	GGCC	3 cut(s)	177, 798, 938
ApeKI	GCWGC	3 cut(s)	611, 967, 1156
ApoI	RAATTY	4 cut(s)	888, 1011, 1178, 1485
AspA2I	CCTAGG	1 cut(s)	1259
AspS9I	GGNCC	2 cut(s)	8, 1454
AsuC2I	CCSGG	1 cut(s)	1558
AsuHPI	GGTGA	3 cut(s)	577, 788, 1368
AvaII	GGWCC	2 cut(s)	8, 1454
AvrII	CCTAGG	1 cut(s)	1259
BaeGI	GKGCMC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	1255
BanII	GRGCYC	1 cut(s)	1072
Bbv12I	GWGCWC	2 cut(s)	477, 842
BbvI	GCAGC	3 cut(s)	623, 979, 1168
BccI	CCATC	5 cut(s)	342, 374, 619, 685, 956
BceAI	ACGGC	1 cut(s)	959
BcgI	CGANNNNNNTGC	4 cut(s)	812, 846, 1202, 1236
BciT130I	CCWGG	1 cut(s)	1515
BciVI	GTATCC	1 cut(s)	128
BclI	TGATCA	2 cut(s)	679, 1027
BcnI	CCSGG	1 cut(s)	1558
BfaI	CTAG	3 cut(s)	77, 1073, 1260
BfmI	CTRYAG	2 cut(s)	66, 1089
BfuI	GTATCC	1 cut(s)	128
BisI	GCNGC	3 cut(s)	612, 968, 1157
BlnI	CCTAGG	1 cut(s)	1259
BlsI	GCNGC	3 cut(s)	613, 969, 1158
Bme1390I	CCNGG	2 cut(s)	1515, 1558
Bme18I	GGWCC	2 cut(s)	8, 1454
BmgT120I	GGNCC	2 cut(s)	8, 1454
BmiI	GGNNCC	3 cut(s)	9, 1257, 1455
BmrFI	CCNGG	2 cut(s)	1515, 1558
BmrI	ACTGGG	1 cut(s)	1391
BmsI	GCATC	5 cut(s)	586, 591, 814, 820, 990
BmuI	ACTGGG	1 cut(s)	1391
BpuMI	CCSGG	1 cut(s)	1558
BsaJI	CCNNGG	4 cut(s)	174, 493, 1160, 1259
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 495, 834, 1166
Bse1I	ACTGG	3 cut(s)	689, 778, 1386
BseBI	CCWGG	1 cut(s)	1515
BseDI	CCNNGG	4 cut(s)	174, 493, 1160, 1259
BseLI	CCNNNNNNNGG	4 cut(s)	33, 495, 834, 1166
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	3 cut(s)	689, 778, 1386
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	623, 979, 1168
BseYI	CCCAGC	1 cut(s)	875
BsgI	GTGCAG	1 cut(s)	1088
BshFI	GGCC	3 cut(s)	179, 800, 940
BshNI	GGYRCC	1 cut(s)	1255
BsiHKAI	GWGCWC	2 cut(s)	477, 842
BsiSI	CCGG	1 cut(s)	1558
BslFI	GGGAC	3 cut(s)	21, 1318, 1467
BslI	CCNNNNNNNGG	4 cut(s)	33, 495, 834, 1166
BsmFI	GGGAC	3 cut(s)	21, 1318, 1467
BsnI	GGCC	3 cut(s)	179, 800, 940
Bsp1286I	GDGCHC	4 cut(s)	314, 477, 842, 1072
Bsp143I	GATC	6 cut(s)	241, 330, 679, 1027, 1472, 1565
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	4 cut(s)	80, 460, 562, 1601
BspANI	GGCC	3 cut(s)	179, 800, 940
BspCNI	CTCAG	1 cut(s)	422
BspHI	TCATGA	1 cut(s)	1191
BspLI	GGNNCC	3 cut(s)	9, 1257, 1455
BspMAI	CTGCAG	1 cut(s)	1093
BspPI	GGATC	2 cut(s)	1480, 1573
BspT107I	GGYRCC	1 cut(s)	1255
BsrI	ACTGG	3 cut(s)	689, 778, 1386
BssECI	CCNNGG	4 cut(s)	174, 493, 1160, 1259
BssMI	GATC	6 cut(s)	241, 330, 679, 1027, 1472, 1565
BssNAI	GTATAC	1 cut(s)	1146
BssT1I	CCWWGG	3 cut(s)	174, 1160, 1259
Bst1107I	GTATAC	1 cut(s)	1146
Bst2UI	CCWGG	1 cut(s)	1515
Bst4CI	ACNGT	4 cut(s)	316, 578, 673, 782
BstC8I	GCNNGC	3 cut(s)	181, 972, 1418
BstDEI	CTNAG	3 cut(s)	300, 409, 1481
BstDSI	CCRYGG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	776
BstKTI	GATC	6 cut(s)	244, 333, 682, 1030, 1475, 1568
BstMBI	GATC	6 cut(s)	241, 330, 679, 1027, 1472, 1565
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 508, 635, 986, 1097, 1264
BstNI	CCWGG	1 cut(s)	1515
BstNSI	RCATGY	1 cut(s)	1311
BstPI	GGTNACC	1 cut(s)	776
BstSCI	CCNGG	2 cut(s)	1513, 1556
BstSFI	CTRYAG	2 cut(s)	66, 1089
BstSLI	GKGCMC	1 cut(s)	314
BstV1I	GCAGC	3 cut(s)	623, 979, 1168
BstX2I	RGATCY	1 cut(s)	1472
BstXI	CCANNNNNNTGG	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	1472
BstZ17I	GTATAC	1 cut(s)	1146
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	3 cut(s)	179, 800, 940
BtgI	CCRYGG	1 cut(s)	174
BtsIMutI	CAGTG	2 cut(s)	682, 1379
Cac8I	GCNNGC	3 cut(s)	181, 972, 1418
CciI	TCATGA	1 cut(s)	1191
Cfr13I	GGNCC	2 cut(s)	8, 1454
Csp6I	GTAC	2 cut(s)	862, 1508
CviQI	GTAC	2 cut(s)	862, 1508
DdeI	CTNAG	3 cut(s)	300, 409, 1481
DpnI	GATC	6 cut(s)	243, 332, 681, 1029, 1474, 1567
DpnII	GATC	6 cut(s)	241, 330, 679, 1027, 1472, 1565
Eco130I	CCWWGG	3 cut(s)	174, 1160, 1259
Eco24I	GRGCYC	1 cut(s)	1072
Eco47I	GGWCC	2 cut(s)	8, 1454
Eco57I	CTGAAG	2 cut(s)	236, 322
Eco91I	GGTNACC	1 cut(s)	776
EcoO65I	GGTNACC	1 cut(s)	776
EcoRII	CCWGG	1 cut(s)	1513
EcoT14I	CCWWGG	3 cut(s)	174, 1160, 1259
EcoT22I	ATGCAT	1 cut(s)	835
EcoT38I	GRGCYC	1 cut(s)	1072
ErhI	CCWWGG	3 cut(s)	174, 1160, 1259
FalI	AAGNNNNNCTT	2 cut(s)	1355, 1387
FaqI	GGGAC	3 cut(s)	21, 1318, 1467
FauI	CCCGC	1 cut(s)	555
FbaI	TGATCA	2 cut(s)	679, 1027
FblI	GTMKAC	1 cut(s)	1145
Fnu4HI	GCNGC	3 cut(s)	612, 968, 1157
FriOI	GRGCYC	1 cut(s)	1072
Fsp4HI	GCNGC	3 cut(s)	612, 968, 1157
FspBI	CTAG	3 cut(s)	77, 1073, 1260
GluI	GCNGC	3 cut(s)	612, 968, 1157
GsaI	CCCAGC	1 cut(s)	879
HaeIII	GGCC	3 cut(s)	179, 800, 940
HapII	CCGG	1 cut(s)	1558
HindIII	AAGCTT	3 cut(s)	636, 909, 1429
HpaII	CCGG	1 cut(s)	1558
HphI	GGTGA	3 cut(s)	577, 788, 1368
Hpy166II	GTNNAC	2 cut(s)	250, 1146
Hpy188I	TCNGA	3 cut(s)	341, 494, 844
Hpy188III	TCNNGA	2 cut(s)	718, 1192
Hpy8I	GTNNAC	2 cut(s)	250, 1146
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4III	ACNGT	4 cut(s)	316, 578, 673, 782
HpyCH4IV	ACGT	2 cut(s)	270, 1575
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 508, 635, 986, 1097, 1264
HpyF3I	CTNAG	3 cut(s)	300, 409, 1481
HpySE526I	ACGT	2 cut(s)	270, 1575
Ksp22I	TGATCA	2 cut(s)	679, 1027
Kzo9I	GATC	6 cut(s)	241, 330, 679, 1027, 1472, 1565
LmnI	GCTCC	1 cut(s)	845
Lsp1109I	GCAGC	3 cut(s)	623, 979, 1168
LweI	GCATC	5 cut(s)	586, 591, 814, 820, 990
MaeI	CTAG	3 cut(s)	77, 1073, 1260
MaeII	ACGT	2 cut(s)	270, 1575
MaeIII	GTNAC	5 cut(s)	316, 776, 782, 1045, 1244
MalI	GATC	6 cut(s)	243, 332, 681, 1029, 1474, 1567
MboI	GATC	6 cut(s)	241, 330, 679, 1027, 1472, 1565
MboII	GAAGA	5 cut(s)	236, 357, 700, 971, 1364
MflI	RGATCY	1 cut(s)	1472
MhlI	GDGCHC	4 cut(s)	314, 477, 842, 1072
MluCI	AATT	9 cut(s)	484, 601, 888, 1011, 1077, 1178, 1202, 1366, 1485
MmeI	TCCRAC	3 cut(s)	291, 862, 867
MnlI	CCTC	9 cut(s)	46, 268, 274, 301, 488, 1105, 1122, 1322, 1592
Mph1103I	ATGCAT	1 cut(s)	835
MseI	TTAA	3 cut(s)	123, 1286, 1548
MslI	CAYNNNNRTG	2 cut(s)	594, 794
MspA1I	CMGCKG	1 cut(s)	875
MspI	CCGG	1 cut(s)	1558
MspR9I	CCNGG	2 cut(s)	1515, 1558
MvaI	CCWGG	1 cut(s)	1515
MwoI	GCNNNNNNNGC	6 cut(s)	77, 508, 635, 986, 1097, 1264
NciI	CCSGG	1 cut(s)	1558
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	6 cut(s)	241, 330, 679, 1027, 1472, 1565
NlaIV	GGNNCC	3 cut(s)	9, 1257, 1455
NmuCI	GTSAC	4 cut(s)	316, 776, 782, 1045
NsiI	ATGCAT	1 cut(s)	835
NspI	RCATGY	1 cut(s)	1311
PagI	TCATGA	1 cut(s)	1191
PkrI	GCNGC	3 cut(s)	613, 969, 1158
Psp1406I	AACGTT	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	1513
PspEI	GGTNACC	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	875
PspGI	CCWGG	1 cut(s)	1513
PspN4I	GGNNCC	3 cut(s)	9, 1257, 1455
PspPI	GGNCC	2 cut(s)	8, 1454
PsrI	GAACNNNNNNTAC	2 cut(s)	1352, 1384
PstI	CTGCAG	1 cut(s)	1093
PsuI	RGATCY	1 cut(s)	1472
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	863, 1509
RsaNI	GTAC	2 cut(s)	862, 1508
RseI	CAYNNNNRTG	2 cut(s)	594, 794
SaqAI	TTAA	3 cut(s)	123, 1286, 1548
SatI	GCNGC	3 cut(s)	612, 968, 1157
Sau3AI	GATC	6 cut(s)	241, 330, 679, 1027, 1472, 1565
Sau96I	GGNCC	2 cut(s)	8, 1454
ScrFI	CCNGG	2 cut(s)	1515, 1558
SduI	GDGCHC	4 cut(s)	314, 477, 842, 1072
SfaNI	GCATC	5 cut(s)	586, 591, 814, 820, 990
SfcI	CTRYAG	2 cut(s)	66, 1089
SinI	GGWCC	2 cut(s)	8, 1454
SmiMI	CAYNNNNRTG	2 cut(s)	594, 794
Sse9I	AATT	9 cut(s)	484, 601, 888, 1011, 1077, 1178, 1202, 1366, 1485
SsiI	CCGC	4 cut(s)	80, 460, 562, 1601
SspI	AATATT	2 cut(s)	466, 531
SspMI	CTAG	3 cut(s)	77, 1073, 1260
StyD4I	CCNGG	2 cut(s)	1513, 1556
StyI	CCWWGG	3 cut(s)	174, 1160, 1259
TaaI	ACNGT	4 cut(s)	316, 578, 673, 782
TaiI	ACGT	2 cut(s)	273, 1578
TaqI	TCGA	3 cut(s)	197, 822, 1222
TasI	AATT	9 cut(s)	484, 601, 888, 1011, 1077, 1178, 1202, 1366, 1485
Tru1I	TTAA	3 cut(s)	123, 1286, 1548
Tru9I	TTAA	3 cut(s)	123, 1286, 1548
TscAI	CASTG	2 cut(s)	689, 1386
TseFI	GTSAC	4 cut(s)	316, 776, 782, 1045
TseI	GCWGC	3 cut(s)	611, 967, 1156
Tsp45I	GTSAC	4 cut(s)	316, 776, 782, 1045
TspDTI	ATGAA	7 cut(s)	17, 339, 660, 881, 920, 1180, 1347
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	2 cut(s)	689, 1386
VpaK11BI	GGWCC	2 cut(s)	8, 1454
XapI	RAATTY	4 cut(s)	888, 1011, 1178, 1485
XceI	RCATGY	1 cut(s)	1311
XmaJI	CCTAGG	1 cut(s)	1259
XmiI	GTMKAC	1 cut(s)	1145
XspI	CTAG	3 cut(s)	77, 1073, 1260
Zsp2I	ATGCAT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.