Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003765

Physical Location & Seq

Genomic Coordinates Forward (+)

18742365 .. 18743822

Gene Structure 1458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGATACGGAATACCATATCCGCGTATGGAGTCAAGGTTTGCAATACATTCCGTGATCTTGAAGAATCAAATATTCTGCAACCGTATATGAGGGATGCCATAACAGAAATATCTAAAGCATGTGAAGCTTTCCAAGCAAAGGAATCAGCTCCTTCTATTGCTGTAACTGCAACTCGAGCGCTTCAGTCAGAGATTACGAAGATTTATATCCTAAGGCTTTGCTCATGGATGCGGGCATCAACTGCAGAGATTTCAAAAGACGAGACATGGGTTCCTGTATCAGTTCTTGAAAGGAATAAATCTCCCTACACAATCTCTTTCTTGCCTCTAGCATTCCGTAATGTTATGACATCAGCAATGGATCAAATCAAGTTGATGATTCAATCTTTAAGAACTGAGGCTACGAAGTCGGAAGAAATGTTCATGCAACTCCAAGAAACACAAGAATCTGTCAGACTTGCTTTTTTGAACTGTATGCTCGATTTTGCAGGTCATCTAGAGCGCATTGGAAGTGAGCTTTCCGTAAACAAATCCAAAGGAGGAAGTTCACATGTACAAAATGGATATTCTCATACCCTAGAAGAAAAGTCTGATCGATCCCAGGAAGTGTTGGCCCACATCAACAGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0030054 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043230 GO:0043933 GO:0044085 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0055044 GO:0060321 GO:0065003 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

Sec5

Protein Analysis

211

Amino Acids

23.67

Weight (kDa)

6.12

Isoelectric Point (pI)

59.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21170 AT1G21170 AT1G76850
fragaria_vesca	FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280
malus_domestica	MD02G1241200.v1.1 MD02G1241400.v1.1 MD07G1075500.v1.1
prunus_persica	Prupe.8G058700_v2.0.a1 Prupe.8G058700_v2.0.a1
pyrus_communis	pycom02g20640 pycom02g20660 pycom02g20670 pycom02g20680 pycom02g20750 pycom02g20760 pycom07g05950
rosa_chinensis	RchiOBHm_Chr1g0332001
rosa_laevigata	RLG00000029699
rosa_multiflora	Rmu_co8474765.1_g000001 Rmu_sc0003358.1_g000014
rosa_roxburghii	Rroxscaffold_4G00318510
rosa_rugosa	Rorug01G0097700
rosa_samantha	Rh1AG121600 Rh1BG093100 Rh1CG116400 Rh1DG127300
rosa_wichuraiana	Rw1G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	479
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	21, 232
AclWI	GGATC	2 cut(s)	369, 591
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	555
AfeI	AGCGCT	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	5 cut(s)	62, 255, 290, 383, 469
AjnI	CCWGG	1 cut(s)	600
AloI	GAACNNNNNNTCC	2 cut(s)	404, 436
AluBI	AGCT	3 cut(s)	128, 149, 517
AluI	AGCT	3 cut(s)	128, 149, 517
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	2 cut(s)	369, 591
Ama87I	CYCGRG	1 cut(s)	174
Aor51HI	AGCGCT	1 cut(s)	180
AoxI	GGCC	1 cut(s)	612
AspLEI	GCGC	2 cut(s)	181, 504
AspS9I	GGNCC	1 cut(s)	613
AvaI	CYCGRG	1 cut(s)	174
AxyI	CCTNAGG	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	602
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	3 cut(s)	329, 497, 578
BfmI	CTRYAG	1 cut(s)	243
BfoI	RGCGCY	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	479
Bme1390I	CCNGG	1 cut(s)	602
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	602
BmsI	GCATC	3 cut(s)	85, 219, 245
Bsa29I	ATCGAT	1 cut(s)	595
BsaBI	GATNNNNATC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	600
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse21I	CCTNAGG	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	602
BseCI	ATCGAT	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	2 cut(s)	100, 234
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	614
BshVI	ATCGAT	1 cut(s)	595
BsiHKCI	CYCGRG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	614
BsoBI	CYCGRG	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	553
Bsp143I	GATC	4 cut(s)	55, 361, 592, 596
BspACI	CCGC	2 cut(s)	21, 232
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	1 cut(s)	388
BspDI	ATCGAT	1 cut(s)	595
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	2 cut(s)	369, 591
BsrDI	GCAATG	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	553
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	4 cut(s)	55, 361, 592, 596
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	3 cut(s)	84, 473, 626
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	553
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	212, 396
BstF5I	GGATG	2 cut(s)	100, 234
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	2 cut(s)	181, 504
BstKTI	GATC	4 cut(s)	58, 364, 595, 599
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	4 cut(s)	55, 361, 592, 596
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 134, 167, 176, 242
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	2 cut(s)	123, 554
BstSCI	CCNGG	1 cut(s)	600
BstSFI	CTRYAG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	23
Bsu15I	ATCGAT	1 cut(s)	595
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	614
BsuTUI	ATCGAT	1 cut(s)	595
BtsCI	GGATG	2 cut(s)	100, 234
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	2 cut(s)	181, 504
Cfr13I	GGNCC	1 cut(s)	613
ClaI	ATCGAT	1 cut(s)	595
Csp6I	GTAC	1 cut(s)	554
CviAII	CATG	5 cut(s)	120, 225, 267, 424, 551
CviJI	RGCY	6 cut(s)	128, 149, 217, 401, 517, 614
CviKI_1	RGCY	6 cut(s)	128, 149, 217, 401, 517, 614
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	2 cut(s)	212, 396
DpnI	GATC	4 cut(s)	57, 363, 594, 598
DpnII	GATC	4 cut(s)	55, 361, 592, 596
Eco47III	AGCGCT	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	167
Eco81I	CCTNAGG	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	600
FaeI	CATG	5 cut(s)	123, 228, 270, 427, 554
FatI	CATG	5 cut(s)	119, 224, 266, 423, 550
FauI	CCCGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	107, 241
FspBI	CTAG	3 cut(s)	329, 497, 578
GlaI	GCGC	2 cut(s)	180, 503
HaeII	RGCGCY	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	614
HhaI	GCGC	2 cut(s)	181, 504
Hin1II	CATG	5 cut(s)	123, 228, 270, 427, 554
Hin6I	GCGC	2 cut(s)	179, 502
HinP1I	GCGC	2 cut(s)	179, 502
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	5 cut(s)	30, 65, 143, 379, 446
Hpy166II	GTNNAC	2 cut(s)	526, 548
Hpy188I	TCNGA	4 cut(s)	190, 412, 455, 592
Hpy188III	TCNNGA	3 cut(s)	59, 287, 497
Hpy8I	GTNNAC	2 cut(s)	526, 548
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	3 cut(s)	84, 473, 626
HpyCH4V	TGCA	6 cut(s)	42, 79, 170, 245, 427, 488
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 134, 167, 176, 242
HpyF3I	CTNAG	2 cut(s)	212, 396
Hsp92II	CATG	5 cut(s)	123, 228, 270, 427, 554
HspAI	GCGC	2 cut(s)	179, 502
Kzo9I	GATC	4 cut(s)	55, 361, 592, 596
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	4 cut(s)	288, 474, 587, 614
LweI	GCATC	3 cut(s)	85, 219, 245
MaeI	CTAG	3 cut(s)	329, 497, 578
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	4 cut(s)	57, 363, 594, 598
MboI	GATC	4 cut(s)	55, 361, 592, 596
MboII	GAAGA	4 cut(s)	74, 211, 425, 593
MlyI	GAGTC	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	4 cut(s)	84, 336, 391, 533
MseI	TTAA	2 cut(s)	389, 631
MspR9I	CCNGG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	602
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	5 cut(s)	125, 134, 167, 176, 242
NdeII	GATC	4 cut(s)	55, 361, 592, 596
NlaIII	CATG	5 cut(s)	123, 228, 270, 427, 554
NlaIV	GGNNCC	1 cut(s)	273
NspI	RCATGY	2 cut(s)	123, 554
PaeR7I	CTCGAG	1 cut(s)	174
PciI	ACATGT	1 cut(s)	550
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	4 cut(s)	65, 143, 379, 446
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PscI	ACATGT	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	613
PspXI	VCTCGAGB	1 cut(s)	174
PsrI	GAACNNNNNNTAC	2 cut(s)	385, 417
PstI	CTGCAG	1 cut(s)	247
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
SaqAI	TTAA	2 cut(s)	389, 631
Sau3AI	GATC	4 cut(s)	55, 361, 592, 596
Sau96I	GGNCC	1 cut(s)	613
SchI	GAGTC	1 cut(s)	39
ScrFI	CCNGG	1 cut(s)	602
SetI	ASST	5 cut(s)	39, 130, 151, 493, 519
SfaNI	GCATC	3 cut(s)	85, 219, 245
SfcI	CTRYAG	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SsiI	CCGC	2 cut(s)	21, 232
SspI	AATATT	1 cut(s)	73
SspMI	CTAG	3 cut(s)	329, 497, 578
StyD4I	CCNGG	1 cut(s)	600
TaaI	ACNGT	3 cut(s)	84, 473, 626
TaqI	TCGA	3 cut(s)	175, 480, 595
TatI	WGTACW	1 cut(s)	553
TfiI	GAWTC	4 cut(s)	65, 143, 379, 446
Tru1I	TTAA	2 cut(s)	389, 631
Tru9I	TTAA	2 cut(s)	389, 631
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	4 cut(s)	22, 41, 326, 511
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	2 cut(s)	123, 554
XhoI	CTCGAG	1 cut(s)	174
XspI	CTAG	3 cut(s)	329, 497, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.