Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003765

Physical Location & Seq

Genomic Coordinates Forward (+)

18777391 .. 18779509

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20750.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGACCTATCATGCAAATTCAGTGATGAAAAACCATATTTATATTTGTGTTGCCATATTTAACCTACAGTCGTCCCAAGTTTCTACTGAATCAAATGCTAATGCTCCGGCAAATAAAGCTGAGGATAAAGTTGGAAATGGGAAATACTCCACTCATTCTCTTGATGAAGTTGCTGGAATGATACGGAATACCATATCCGCGTATGGAGTCAAGGTGAGTATGCTGGCTGAACCTGCTTATTACCAATTAGAATTACATAAATGGAAGGCTTGGTTCATTAAGCTTAGGTACATAGATGAACTTTTAGTAAAACTGAGTATTTTCTATTGTAATCGCAGAATGACAAATTTTCTTGATCAACTCTGTTCTACATTCTTTGATGCTTTATTTTGTTTAGAAATAAGGCTATCTGGATATTTTCTTTTTTCTTTATTAAAATGTATTTTAATTCTATATGCTGTATTTATATGCTTCAGATCAAAATTTAGTATCAGCTCATGCCAAACTCCATTCGACCGTGGTTCTTTGCATATCTTCAGTTTAAACCCACGTTCGGTTTGCAATACATTCCGTGATCTTGAAGAATCAAATATTCTGCAACCGTATATGAGGGATGCCATAACAGAAATATCTAAAGCATGTGAAGCTTTCCAAGCAAAGGAATCAGCTCCTTCTATTGCTGGTATCTTAGCTTTCTCTTTACCTGCAATGTGCTGTAACTGCAACTCGAGCGCTTCAGTCAGAGATTACGAAGATTTATATCATAAGGCTTTGCTCATGGATGCGGGCATCAACTTTCTTGAAAGGAATAAATCTCCCTACACAATCTCTTTCTTGCCTCTAGCATTCCGTAATGTTATGACATCAGCAATGGATCAAATCAAGTTACATGCTCAAGATTTTTTAAGTGTTCATTACCTGTTTCTCTGCAGAAGTTCAGAACATTCACTCATTATTTATGTATTCATCATTAACAGTATTATATATTTCAGGATGATTCAATCTTTAAGAACTGAGGCTACGAAGTCGGAAGAAATGTTCATGCAACTCCAAGAAACACAAGAATCTGTCAGACTTGCTTTTTTGAACTGTATGCTCGATTTTGCAGGTATGATGGATGACTACCTAACTCAACTTCATGTTAAGTATTTAATGTCCGGTTGTGATGCTTCCATTCTCTGCACACTAATCAGGTCATCTAGAGCTTCACATGTACAAAATGGATATTCTCATACCCTAGAAGAAAAGTCTGATCTCCCAGGAAGTGTTGGCCCACATCAACAGTTGTTAATAGTCTTGAGTAATGTTGGCTATTGCAGAGAAGAACTTTCTTATGAGTTGTACAAAAATTACAAGCACATCTGGCTACAGTCTAGGTATGTGGGCCTTATTTTTTCTTCATTGAACCGTAGGATATCATCGTCCACTGAAGTGGGAACCCAAGAACCAGAAATCATATTGGCTACTATCTTGTATCTTCCACTTTCAAATGGCGTAGGCATATTCAATAACTATTTGGTTGGATCAAGACTGACTAGAATTTATTCATTTGTGAAGCAAGGGCTTCTAGTTCAAATGGTTAACTGCATTTACTCATCCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0030054 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043230 GO:0043933 GO:0044085 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0055044 GO:0060321 GO:0065003 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

Sec5

Protein Analysis

535

Amino Acids

60.91

Weight (kDa)

7.49

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21170 AT1G21170 AT1G76850
fragaria_vesca	FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280
malus_domestica	MD02G1241200.v1.1 MD02G1241400.v1.1 MD07G1075500.v1.1
prunus_persica	Prupe.8G058700_v2.0.a1 Prupe.8G058700_v2.0.a1
pyrus_communis	pycom02g20640 pycom02g20660 pycom02g20670 pycom02g20680 pycom02g20750 pycom02g20760 pycom07g05950
rosa_chinensis	RchiOBHm_Chr1g0332001
rosa_laevigata	RLG00000029699
rosa_multiflora	Rmu_co8474765.1_g000001 Rmu_sc0003358.1_g000014
rosa_roxburghii	Rroxscaffold_4G00318510
rosa_rugosa	Rorug01G0097700
rosa_samantha	Rh1AG121600 Rh1BG093100 Rh1CG116400 Rh1DG127300
rosa_wichuraiana	Rw1G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	241, 712, 1097
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	198, 785
AclWI	GGATC	2 cut(s)	882, 1531
AcsI	RAATTY	4 cut(s)	16, 346, 482, 1539
AcuI	CTGAAG	4 cut(s)	457, 520, 720, 1449
AfaI	GTAC	3 cut(s)	290, 1215, 1343
AfeI	AGCGCT	1 cut(s)	733
AfiI	CCNNNNNNNGG	2 cut(s)	553, 658
AflIII	ACRYGT	1 cut(s)	1210
AgsI	TTSAA	8 cut(s)	581, 803, 1001, 1087, 1405, 1488, 1507, 1574
AjnI	CCWGG	1 cut(s)	1258
AleI	CACNNNNGTG	1 cut(s)	1430
AloI	GAACNNNNNNTCC	2 cut(s)	1022, 1054
AluBI	AGCT	7 cut(s)	119, 283, 495, 647, 668, 692, 1205
AluI	AGCT	7 cut(s)	119, 283, 495, 647, 668, 692, 1205
AlwI	GGATC	2 cut(s)	882, 1531
Ama87I	CYCGRG	1 cut(s)	727
Aor51HI	AGCGCT	1 cut(s)	733
AoxI	GGCC	2 cut(s)	1270, 1384
ApoI	RAATTY	4 cut(s)	16, 346, 482, 1539
Asp700I	GAANNNNTTC	1 cut(s)	1543
AspLEI	GCGC	1 cut(s)	734
AspS9I	GGNCC	2 cut(s)	1271, 1384
AsuHPI	GGTGA	1 cut(s)	226
AvaI	CYCGRG	1 cut(s)	727
BbvCI	CCTCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	1108
BciT130I	CCWGG	1 cut(s)	1260
BclI	TGATCA	1 cut(s)	355
BfaI	CTAG	6 cut(s)	842, 1200, 1238, 1374, 1536, 1568
BfmI	CTRYAG	3 cut(s)	65, 928, 1367
BfoI	RGCGCY	1 cut(s)	735
BfuAI	ACCTGC	3 cut(s)	241, 712, 1097
Bme1390I	CCNGG	1 cut(s)	1260
BmeT110I	CYCGRG	1 cut(s)	727
BmgT120I	GGNCC	2 cut(s)	1271, 1384
BmiI	GGNNCC	1 cut(s)	1438
BmrFI	CCNGG	1 cut(s)	1260
BmsI	GCATC	5 cut(s)	370, 604, 772, 798, 1156
Bpu10I	CCTNAGC	2 cut(s)	120, 284
BpuEI	CTTGAG	2 cut(s)	879, 1318
BsaBI	GATNNNNATC	1 cut(s)	759
BsaJI	CCNNGG	2 cut(s)	517, 1258
BsaWI	WCCGGW	1 cut(s)	1157
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 658
Bse3DI	GCAATG	2 cut(s)	714, 876
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	1260
BseDI	CCNNGG	2 cut(s)	517, 1258
BseGI	GGATG	5 cut(s)	619, 787, 999, 1123, 1595
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	2 cut(s)	553, 658
BseMI	GCAATG	2 cut(s)	714, 876
BseMII	CTCAG	3 cut(s)	111, 305, 1005
BsgI	GTGCAG	1 cut(s)	1165
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	1 cut(s)	517
BshFI	GGCC	2 cut(s)	1272, 1386
BsiEI	CGRYCG	1 cut(s)	517
BsiHKCI	CYCGRG	1 cut(s)	727
BsiSI	CCGG	2 cut(s)	107, 1158
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	553, 658
BsmFI	GGGAC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	845
BsnI	GGCC	2 cut(s)	1272, 1386
BsoBI	CYCGRG	1 cut(s)	727
Bsp1407I	TGTACA	2 cut(s)	1213, 1341
Bsp143I	GATC	6 cut(s)	355, 476, 574, 874, 1252, 1523
BspACI	CCGC	2 cut(s)	198, 785
BspANI	GGCC	2 cut(s)	1272, 1386
BspCNI	CTCAG	3 cut(s)	112, 306, 1006
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	1438
BspMAI	CTGCAG	1 cut(s)	932
BspMI	ACCTGC	3 cut(s)	241, 712, 1097
BspPI	GGATC	2 cut(s)	882, 1531
BsrDI	GCAATG	2 cut(s)	714, 876
BsrGI	TGTACA	2 cut(s)	1213, 1341
BssECI	CCNNGG	2 cut(s)	517, 1258
BssMI	GATC	6 cut(s)	355, 476, 574, 874, 1252, 1523
Bst2UI	CCWGG	1 cut(s)	1260
Bst4CI	ACNGT	8 cut(s)	69, 518, 603, 977, 1091, 1284, 1371, 1409
BstAUI	TGTACA	2 cut(s)	1213, 1341
BstC8I	GCNNGC	2 cut(s)	225, 787
BstDEI	CTNAG	5 cut(s)	120, 284, 314, 688, 1014
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	5 cut(s)	619, 787, 999, 1123, 1595
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	735
BstHHI	GCGC	1 cut(s)	734
BstKTI	GATC	6 cut(s)	358, 479, 577, 877, 1255, 1526
BstMBI	GATC	6 cut(s)	355, 476, 574, 874, 1252, 1523
BstMCI	CGRYCG	1 cut(s)	517
BstMWI	GCNNNNNNNGC	7 cut(s)	116, 233, 644, 653, 720, 729, 1363
BstNI	CCWGG	1 cut(s)	1260
BstNSI	RCATGY	3 cut(s)	642, 893, 1214
BstSCI	CCNGG	1 cut(s)	1258
BstSFI	CTRYAG	3 cut(s)	65, 928, 1367
BstUI	CGCG	1 cut(s)	200
BstXI	CCANNNNNNTGG	1 cut(s)	1432
BsuRI	GGCC	2 cut(s)	1272, 1386
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	5 cut(s)	619, 787, 999, 1123, 1595
BtsIMutI	CAGTG	2 cut(s)	27, 1425
BveI	ACCTGC	3 cut(s)	241, 712, 1097
Cac8I	GCNNGC	2 cut(s)	225, 787
CfoI	GCGC	1 cut(s)	734
Cfr13I	GGNCC	2 cut(s)	1271, 1384
Csp6I	GTAC	3 cut(s)	289, 1214, 1342
CviAII	CATG	9 cut(s)	11, 498, 639, 778, 890, 1042, 1139, 1211, 1602
CviQI	GTAC	3 cut(s)	289, 1214, 1342
DdeI	CTNAG	5 cut(s)	120, 284, 314, 688, 1014
DpnI	GATC	6 cut(s)	357, 478, 576, 876, 1254, 1525
DpnII	GATC	6 cut(s)	355, 476, 574, 874, 1252, 1523
DraI	TTTAAA	1 cut(s)	543
Eco32I	GATATC	1 cut(s)	1416
Eco47III	AGCGCT	1 cut(s)	733
Eco57I	CTGAAG	4 cut(s)	457, 520, 720, 1449
Eco88I	CYCGRG	1 cut(s)	727
EcoRII	CCWGG	1 cut(s)	1258
EcoRV	GATATC	1 cut(s)	1416
FaeI	CATG	9 cut(s)	14, 501, 642, 781, 893, 1045, 1142, 1214, 1605
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	9 cut(s)	10, 497, 638, 777, 889, 1041, 1138, 1210, 1601
FauI	CCCGC	1 cut(s)	778
FbaI	TGATCA	1 cut(s)	355
FokI	GGATG	5 cut(s)	626, 794, 1006, 1130, 1582
FspBI	CTAG	6 cut(s)	842, 1200, 1238, 1374, 1536, 1568
GlaI	GCGC	1 cut(s)	733
HaeII	RGCGCY	1 cut(s)	735
HaeIII	GGCC	2 cut(s)	1272, 1386
HapII	CCGG	2 cut(s)	107, 1158
HhaI	GCGC	1 cut(s)	734
Hin1II	CATG	9 cut(s)	14, 501, 642, 781, 893, 1045, 1142, 1214, 1605
Hin6I	GCGC	1 cut(s)	732
HinP1I	GCGC	1 cut(s)	732
HincII	GTYRAC	1 cut(s)	1582
HindII	GTYRAC	1 cut(s)	1582
HindIII	AAGCTT	2 cut(s)	281, 645
HinfI	GANTC	6 cut(s)	89, 207, 584, 662, 997, 1064
HpaI	GTTAAC	1 cut(s)	1582
HpaII	CCGG	2 cut(s)	107, 1158
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	2 cut(s)	1425, 1582
Hpy188I	TCNGA	6 cut(s)	476, 743, 940, 1030, 1073, 1252
Hpy8I	GTNNAC	2 cut(s)	1425, 1582
HpyAV	CCTTC	2 cut(s)	259, 681
HpyCH4III	ACNGT	8 cut(s)	69, 518, 603, 977, 1091, 1284, 1371, 1409
HpyCH4IV	ACGT	1 cut(s)	550
HpyF10VI	GCNNNNNNNGC	7 cut(s)	116, 233, 644, 653, 720, 729, 1363
HpyF3I	CTNAG	5 cut(s)	120, 284, 314, 688, 1014
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	9 cut(s)	14, 501, 642, 781, 893, 1045, 1142, 1214, 1605
HspAI	GCGC	1 cut(s)	732
Ksp22I	TGATCA	1 cut(s)	355
KspAI	GTTAAC	1 cut(s)	1582
Kzo9I	GATC	6 cut(s)	355, 476, 574, 874, 1252, 1523
LmnI	GCTCC	2 cut(s)	109, 673
LweI	GCATC	5 cut(s)	370, 604, 772, 798, 1156
MaeI	CTAG	6 cut(s)	842, 1200, 1238, 1374, 1536, 1568
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	2 cut(s)	716, 885
MalI	GATC	6 cut(s)	357, 478, 576, 876, 1254, 1525
MboI	GATC	6 cut(s)	355, 476, 574, 874, 1252, 1523
MboII	GAAGA	8 cut(s)	526, 593, 764, 1043, 1253, 1334, 1389, 1469
MluCI	AATT	8 cut(s)	16, 245, 251, 346, 447, 482, 1348, 1539
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	3 cut(s)	112, 1008, 1501
MnlI	CCTC	4 cut(s)	115, 603, 849, 1009
MroXI	GAANNNNTTC	1 cut(s)	1543
MslI	CAYNNNNRTG	2 cut(s)	1430, 1600
MspI	CCGG	2 cut(s)	107, 1158
MspR9I	CCNGG	1 cut(s)	1260
MssI	GTTTAAAC	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	845
MvaI	CCWGG	1 cut(s)	1260
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	7 cut(s)	116, 233, 644, 653, 720, 729, 1363
NdeII	GATC	6 cut(s)	355, 476, 574, 874, 1252, 1523
NlaIII	CATG	9 cut(s)	14, 501, 642, 781, 893, 1045, 1142, 1214, 1605
NlaIV	GGNNCC	1 cut(s)	1438
NspI	RCATGY	3 cut(s)	642, 893, 1214
OliI	CACNNNNGTG	1 cut(s)	1430
PaeR7I	CTCGAG	1 cut(s)	727
PciI	ACATGT	1 cut(s)	1210
PctI	GAATGC	1 cut(s)	845
PdmI	GAANNNNTTC	1 cut(s)	1543
PfeI	GAWTC	5 cut(s)	89, 584, 662, 997, 1064
PleI	GAGTC	1 cut(s)	215
PmeI	GTTTAAAC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	215
PscI	ACATGT	1 cut(s)	1210
Psp6I	CCWGG	1 cut(s)	1258
PspGI	CCWGG	1 cut(s)	1258
PspN4I	GGNNCC	1 cut(s)	1438
PspPI	GGNCC	2 cut(s)	1271, 1384
PspXI	VCTCGAGB	1 cut(s)	727
PsrI	GAACNNNNNNTAC	2 cut(s)	1003, 1035
PstI	CTGCAG	1 cut(s)	932
RsaI	GTAC	3 cut(s)	290, 1215, 1343
RsaNI	GTAC	3 cut(s)	289, 1214, 1342
RseI	CAYNNNNRTG	2 cut(s)	1430, 1600
Sau3AI	GATC	6 cut(s)	355, 476, 574, 874, 1252, 1523
Sau96I	GGNCC	2 cut(s)	1271, 1384
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	1 cut(s)	1260
SfaNI	GCATC	5 cut(s)	370, 604, 772, 798, 1156
SfcI	CTRYAG	3 cut(s)	65, 928, 1367
Sfr274I	CTCGAG	1 cut(s)	727
SlaI	CTCGAG	1 cut(s)	727
SmiMI	CAYNNNNRTG	2 cut(s)	1430, 1600
SmlI	CTYRAG	3 cut(s)	727, 894, 1297
SmoI	CTYRAG	3 cut(s)	727, 894, 1297
Sse9I	AATT	8 cut(s)	16, 245, 251, 346, 447, 482, 1348, 1539
SsiI	CCGC	2 cut(s)	198, 785
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	6 cut(s)	842, 1200, 1238, 1374, 1536, 1568
StyD4I	CCNGG	1 cut(s)	1258
TaaI	ACNGT	8 cut(s)	69, 518, 603, 977, 1091, 1284, 1371, 1409
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	3 cut(s)	513, 728, 1098
TasI	AATT	8 cut(s)	16, 245, 251, 346, 447, 482, 1348, 1539
TatI	WGTACW	2 cut(s)	1213, 1341
TfiI	GAWTC	5 cut(s)	89, 584, 662, 997, 1064
TscAI	CASTG	2 cut(s)	27, 1432
TspGWI	ACGGA	3 cut(s)	199, 560, 839
TspRI	CASTG	2 cut(s)	27, 1432
XapI	RAATTY	4 cut(s)	16, 346, 482, 1539
XbaI	TCTAGA	1 cut(s)	1199
XceI	RCATGY	3 cut(s)	642, 893, 1214
XhoI	CTCGAG	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	1543
XspI	CTAG	6 cut(s)	842, 1200, 1238, 1374, 1536, 1568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.