Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003765

Physical Location & Seq

Genomic Coordinates Forward (+)

44674604 .. 44692127

Gene Structure 17524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3429 bp

ATGTCGAGCGGCAGTGAGGACGAGGATGAGCTCCTCCAGATGGCTCTGAAGGAGCAATCTCAGAGAGATGTGAATTATCAAAAGCCACCGTCCAGCAACTCCCGGAGACCCGTTGCCAATTACGTCCAAGCCCCTCCTCCTCCTCCGGCAGCAGCCAAGAAATCCAATGGCAACAAGAAGCCGCCGCCGCCGCAGCAGCAGAAGCGGCGAGTGGTCGACGACGACGACGAATCGGATGTCGATATGCTCAGCATATCCAGCGGCGATGAGGACTCGACCTCGAGAGATCAGCAACGTGTGCGGTTCCGCGGCTCTTCTGGGGCTGCCAGACCTAAAGACGACGAGGCTGCTTGGGACGGCGACGAGCCTGGTTGCTGGAAGCATGTGGACGAGGCCGAGCTTGCTCGCAGGGTTCGTGGAATGCGAGAGACAAGAGCAGCACCGGTAGCCATTAAAGTTGAGCGCAAAGCGTCCACTGCAGGTTTGCCAAGGAAGGGACTCACCAATTTACAGTCCTTCCCTCGTGGCATGGAGTGTATTGATCCCCTAGGCCTCGGCATTATAGACAACAAAACCTTGAGACTCATAACCGAGTCCTCCGACTATTCTCCAACCAAGGATGACAAATTGGATAACAGCCTTCGTGAGAAGTTGTTGTATTTCTCTGAGAAATTTGATGCCAAGGTCTTCATATCCCGGATTCACCAAGAAACAAATGCAGCTGATTTGGAGGCTGGTGCTCTGGCTCTTAAAAGTGATCTTATAGGACGCACTCAGCAGAGAAAACAATTGGTCAAAGACAATTTTGACTGCTTCGTCTCTTGCAAAACCACAATTGATGATATCGAGTCAAAATTAAAACGAATTGAAGATGATCCTGAAGGTTCAGGGACTACTCATTTGTTCAAATGCATGGAAGGAGTCAGTTCATTGGCTAATCGTGCTTTCCAGCATCTATTTGAGAGACAGGCTGAAGCTGAAAAGATTAGGTCAGTCCAGGGAATGCTGCAGAGGTTCCGAACACTATTCAATTTGCCCAGTACAATTCGTGGTAGCATAAGCAAGGGTGAATATGACTTGGCAGTTAGGGAATACAAGAAGGCGAAGTCGATTGCTCTCCCTTCTCATGTGGGAATACTGAAACGTGTTCTTGAAGAGGTTGAGAAAGTGATGCATGAGTTTAAAGGCACTCTATACAAGTCTATGGAAGATCCACAGATAGATCTAACCAATCTTGAAAACACAGTAAGACTACTGTTGGAGCTAGAGCCTGAGTCGGATCCTGTTTGGCATTATTTAAATATACAGAATAACAGAATTCGAGGTTTGCTTGAGAAGTGCACACTAGATCATGAAGCTAGAATGGAGACTCTACATAATGTTTTACGTGAAAGGGCTTTATTTGATGCAAGATGGAGGCAGATTCAACAAGATACCAATCAATCTTCAGATGCTCTTGCTTTTGGAAACAACAATCTTCTGGTTGATTCTGTGGCAGTCGATTTGACTGGTGAAGAAGTGGATGCTCTTAGAGGGAGGTATATTCGTAGATTAACTGCTGTGCTTACACATCACATACCAGCATTCTGGAAAGTAGCACTTTCTGTTTTCAGCGGAAAATTCGCAAAGTCATCCCAAGTTTCTACGGAATCAAATGCTAATACTCCAGCAAATAAATCTGAGGAAAAAGTTGGAGATGGGAAATACTCTACTCATTCTCTTGATGAAGTTTCCGTAATGATTCGCAGTACTATAGCAGCATATGAAGTGAAGGTTTGCAATACCTTTCGTGATCTTGAAGAATCAAATATTCTGCAACCATATATGAGTGATGCAATAATTGAAATATCCAAAGCTTGTGAAGCCTTTGAAGCGAAGGAATCAGCTCCATCTATTGCTGTAATTGCAACTCGAGCTCTTCAGTCAGAGATTACAAAGATCTATATTTTAAGGCTTTGCTCGTGGATGCGGGCATCAACGGTAGAGATTTCAAAAGATGAGGCATGGGTCCCAGTGTCAGTTCTTGAACGGAATAAATCCCCCTATACAATATCTTACTTGCCGCTAGCGTTCCGTAATGTTATGACCTCAGCAATGGATCAGATCAAGTTGATGATTCAGACATTAAGGAGTGAGGCGACCAGGTCAGAGGATATGTTTGCGCAACTCCAAGAAATACAAGAATCTGTCAGACTTGCATTTTTGAATTGTATTTTGGATTTTGCAGGTCACCTGGAGCGTATAGGTAGTGAGCTTACTCAAAACAGATCAAGCAAAGGAAGTTCACATGTAGAAAATGGATATTCACAGAACCTAGAAGAGAAGCAAATGTTTGATCTCAGGGGAAGTGTTGTGGGTCCCCATCAACAGTTGTTGATAGTTTTGAGTAATATTGGCTATTGCAAAGAAGAGCTTTCTCATGAGTTGTACAACAACTACAAACATATCTGGCTACAGTCGAGGGAAAGAGAGGAAGAGGATAGTGACATACAAGATTTAGTGATGTCTTTTTCTGGGCTGGAAGAGAAGGTTCTTGAACAGTATACTTTTGCTAAGGCAAATTTGATCAGAACGGCTGCTTCAAACTATTTGTTAGATTCTGGTGTTCAATGGGGAGCAGCACCTGCTGTAAAAGGTGTGCGTGATGCTGCTGTGGAGTTGCTGCACACTTTGGTAGCTGTACATGCAGAGGTTTTTTCTGGTGCTAAGCCTTTTCTGGACAAGACACTTGGCATTCTTGTAGAAGGTCTAATTGATACTTTTATCAGCCTGTTCCACGAAAACAGCATGAAAGAGCTTAGGTCACTTGACACAAATGGTTTCTGCCAGCTAATGCTTGAGCTTGAATATTTCGAGACCATTTTAAATCCATATTTTACACCTGATGCAAGAGAGGCTCTGAAGTCTTTACAAGGGGTGCTTCTGAATAAAGCAACTGAAAGTGTGACTGAAAATGTGGAGAATCCAGGACACAACCGGCGAGCAACACGTGGAAGTGAAGATGCAGTGCCAGATGATAAACTGCCAGGGATGACTGTGTCACCAGATGATCTGATTGCTCATGCCCAGCAATATAGCTCTGAGTTACTTCAAGCAGAGCTTGAGAGGACTCACATCAATACAGCATGCTTTGTTGAGTCAATTCCTTTGGACTCAGCACCAGAATCAGCCAAACGCGCTTATGCTTCCTTTAGGGGTCACTGGATTCTCCCAGTAGAAACTATAGAGGCACACAAGGGACAGCATCTCCAAGCTACTCCAGGAATAGGCGTCGATGAAGTTGTCAATGACCTAAGAATTCCATGTCCTACCTTGTATTTGCTAGTGTTCTCCTGTAGTTACAATTTACTGAAATCCATATTCTTTCTATTCTCTGAGTTCTCCATGAGCTTCTTGTACTGCTCTTTTTCCTCGAATTTCTTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0030054 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043230 GO:0043933 GO:0044085 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0055044 GO:0060321 GO:0065003 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

Sec5

Protein Analysis

1142

Amino Acids

128.39

Weight (kDa)

5.41

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec5	PF15469	181 - 1044	1.8e-144	Exocyst complex component Sec5
Dor1	PF04124	247 - 427	1.5e-07	Dor1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0003765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21170 AT1G21170 AT1G76850
fragaria_vesca	FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280
malus_domestica	MD02G1241200.v1.1 MD02G1241400.v1.1 MD07G1075500.v1.1
prunus_persica	Prupe.8G058700_v2.0.a1 Prupe.8G058700_v2.0.a1
pyrus_communis	pycom02g20640 pycom02g20660 pycom02g20670 pycom02g20680 pycom02g20750 pycom02g20760 pycom07g05950
rosa_chinensis	RchiOBHm_Chr1g0332001
rosa_laevigata	RLG00000029699
rosa_multiflora	Rmu_co8474765.1_g000001 Rmu_sc0003358.1_g000014
rosa_roxburghii	Rroxscaffold_4G00318510
rosa_rugosa	Rorug01G0097700
rosa_samantha	Rh1AG121600 Rh1BG093100 Rh1CG116400 Rh1DG127300
rosa_wichuraiana	Rw1G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2632
AasI	GACNNNNNNGTC	1 cut(s)	815
Acc16I	TGCGCA	1 cut(s)	2163
Acc36I	ACCTGC	3 cut(s)	470, 2216, 2632
AccBSI	CCGCTC	1 cut(s)	9
AccI	GTMKAC	2 cut(s)	216, 2543
AccII	CGCG	2 cut(s)	309, 3177
AclWI	GGATC	6 cut(s)	536, 869, 1205, 1274, 1287, 2106
AcsI	RAATTY	6 cut(s)	671, 1317, 1619, 2560, 3297, 3415
AcuI	CTGAAG	6 cut(s)	68, 900, 993, 1431, 1904, 2921
AcvI	CACGTG	1 cut(s)	2990
AcyI	GRCGYC	1 cut(s)	3270
AfaI	GTAC	5 cut(s)	1042, 1750, 2429, 2682, 3398
AfiI	CCNNNNNNNGG	3 cut(s)	40, 494, 3266
AflIII	ACRYGT	4 cut(s)	295, 1144, 2287, 2987
AgeI	ACCGGT	1 cut(s)	442
AjnI	CCWGG	7 cut(s)	367, 996, 2141, 2232, 2965, 3025, 3259
AjuI	GAANNNNNNNTTGG	2 cut(s)	2198, 2230
Alw21I	GWGCWC	4 cut(s)	33, 742, 1343, 1918
Alw26I	GTCTC	7 cut(s)	100, 422, 574, 823, 958, 1361, 2849
Alw44I	GTGCAC	1 cut(s)	1339
AlwI	GGATC	6 cut(s)	536, 869, 1205, 1274, 1287, 2106
AlwNI	CAGNNNCTG	1 cut(s)	2624
Ama87I	CYCGRG	2 cut(s)	280, 1911
AoxI	GGCC	2 cut(s)	393, 550
ApaLI	GTGCAC	1 cut(s)	1339
ApoI	RAATTY	6 cut(s)	671, 1317, 1619, 2560, 3297, 3415
ArsI	GACNNNNNNTTYG	4 cut(s)	222, 254, 883, 915
AsiGI	ACCGGT	1 cut(s)	442
AspA2I	CCTAGG	1 cut(s)	547
AspLEI	GCGC	3 cut(s)	465, 2164, 3179
AspS9I	GGNCC	2 cut(s)	2008, 2357
AsuC2I	CCSGG	2 cut(s)	103, 697
AsuHPI	GGTGA	6 cut(s)	493, 695, 1079, 1523, 2222, 3033
AsuNHI	GCTAGC	1 cut(s)	2065
AvaI	CYCGRG	2 cut(s)	280, 1911
AvaII	GGWCC	2 cut(s)	2008, 2357
AvrII	CCTAGG	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	1343
BamHI	GGATCC	1 cut(s)	1279
BanII	GRGCYC	2 cut(s)	33, 1918
BauI	CACGAG	2 cut(s)	522, 1960
BbrPI	CACGTG	1 cut(s)	2990
BbsI	GAAGAC	1 cut(s)	679
Bbv12I	GWGCWC	4 cut(s)	33, 742, 1343, 1918
BbvCI	CCTCAGC	1 cut(s)	2089
BccI	CCATC	5 cut(s)	34, 1407, 1691, 1897, 2370
BceAI	ACGGC	2 cut(s)	373, 2589
BcgI	CGANNNNNNTGC	3 cut(s)	329, 363, 3403
BciT130I	CCWGG	7 cut(s)	369, 998, 2143, 2234, 2967, 3027, 3261
BclI	TGATCA	1 cut(s)	2565
BcnI	CCSGG	2 cut(s)	103, 697
BcoDI	GTCTC	7 cut(s)	100, 422, 574, 823, 958, 1361, 2849
BfaI	CTAG	7 cut(s)	548, 1265, 1346, 1359, 2066, 2315, 3323
BfmI	CTRYAG	6 cut(s)	477, 1007, 1752, 2453, 3222, 3334
BfuAI	ACCTGC	3 cut(s)	470, 2216, 2632
BglII	AGATCT	2 cut(s)	1222, 1938
BlnI	CCTAGG	1 cut(s)	547
BlpI	GCTNAGC	2 cut(s)	248, 2706
BmcAI	AGTACT	1 cut(s)	1750
Bme1390I	CCNGG	9 cut(s)	103, 369, 697, 998, 2143, 2234, 2967, 3027, 3261
Bme18I	GGWCC	2 cut(s)	2008, 2357
BmeT110I	CYCGRG	2 cut(s)	280, 1911
BmgT120I	GGNCC	2 cut(s)	2008, 2357
BmiI	GGNNCC	7 cut(s)	305, 1016, 1281, 2009, 2010, 2358, 2359
BmrFI	CCNGG	9 cut(s)	103, 369, 697, 998, 2143, 2234, 2967, 3027, 3261
BmrI	ACTGGG	3 cut(s)	1032, 2006, 3206
BmtI	GCTAGC	1 cut(s)	2069
BmuI	ACTGGG	3 cut(s)	1032, 2006, 3206
BpiI	GAAGAC	1 cut(s)	679
BpmI	CTGGAG	4 cut(s)	20, 1650, 2255, 3243
Bpu10I	CCTNAGC	3 cut(s)	2089, 2553, 2798
Bpu1102I	GCTNAGC	2 cut(s)	248, 2706
BpuEI	CTTGAG	4 cut(s)	598, 1352, 2858, 3122
BpuMI	CCSGG	2 cut(s)	103, 697
BsaAI	YACGTR	2 cut(s)	1388, 2990
BsaBI	GATNNNNATC	1 cut(s)	1437
BsaHI	GRCGYC	1 cut(s)	3270
BsaI	GGTCTC	2 cut(s)	100, 2849
BsaJI	CCNNGG	8 cut(s)	307, 488, 547, 553, 615, 681, 997, 3026
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	3231, 3261
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 494, 3266
Bse118I	RCCGGY	2 cut(s)	442, 2976
Bse1I	ACTGG	5 cut(s)	1038, 1513, 2012, 3206, 3212
Bse3DI	GCAATG	1 cut(s)	2100
Bse8I	GATNNNNATC	1 cut(s)	1437
BseBI	CCWGG	7 cut(s)	369, 998, 2143, 2234, 2967, 3027, 3261
BseDI	CCNNGG	8 cut(s)	307, 488, 547, 553, 615, 681, 997, 3026
BseGI	GGATG	7 cut(s)	31, 241, 625, 1528, 1631, 1971, 3036
BseJI	GATNNNNATC	1 cut(s)	1437
BseLI	CCNNNNNNNGG	3 cut(s)	40, 494, 3266
BseMI	GCAATG	1 cut(s)	2100
BseNI	ACTGG	5 cut(s)	1038, 1513, 2012, 3206, 3212
BseRI	GAGGAG	4 cut(s)	23, 126, 129, 132
BseSI	GKGCMC	1 cut(s)	1343
BseYI	CCCAGC	1 cut(s)	3066
BsgI	GTGCAG	1 cut(s)	2648
Bsh1236I	CGCG	2 cut(s)	309, 3177
BshFI	GGCC	2 cut(s)	395, 552
BshTI	ACCGGT	1 cut(s)	442
BsiHKAI	GWGCWC	4 cut(s)	33, 742, 1343, 1918
BsiHKCI	CYCGRG	2 cut(s)	280, 1911
BsiSI	CCGG	5 cut(s)	103, 146, 443, 697, 2977
BslFI	GGGAC	6 cut(s)	368, 510, 904, 1994, 2343, 3252
BslI	CCNNNNNNNGG	3 cut(s)	40, 494, 3266
BsmAI	GTCTC	7 cut(s)	100, 422, 574, 823, 958, 1361, 2849
BsmBI	CGTCTC	1 cut(s)	823
BsmFI	GGGAC	6 cut(s)	368, 510, 904, 1994, 2343, 3252
BsmI	GAATGC	4 cut(s)	426, 1008, 1583, 2733
BsnI	GGCC	2 cut(s)	395, 552
Bso31I	GGTCTC	2 cut(s)	100, 2849
BsoBI	CYCGRG	2 cut(s)	280, 1911
Bsp1286I	GDGCHC	4 cut(s)	33, 742, 1343, 1918
Bsp1407I	TGTACA	2 cut(s)	2427, 2680
Bsp1720I	GCTNAGC	2 cut(s)	248, 2706
BspANI	GGCC	2 cut(s)	395, 552
BspFNI	CGCG	2 cut(s)	309, 3177
BspHI	TCATGA	2 cut(s)	1351, 2419
BspLI	GGNNCC	7 cut(s)	305, 1016, 1281, 2009, 2010, 2358, 2359
BspMAI	CTGCAG	2 cut(s)	481, 1011
BspMI	ACCTGC	3 cut(s)	470, 2216, 2632
BspOI	GCTAGC	1 cut(s)	2069
BspPI	GGATC	6 cut(s)	536, 869, 1205, 1274, 1287, 2106
BspQI	GCTCTTC	3 cut(s)	319, 1923, 2403
BspTNI	GGTCTC	2 cut(s)	100, 2849
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	2100
BsrFI	RCCGGY	2 cut(s)	442, 2976
BsrGI	TGTACA	2 cut(s)	2427, 2680
BsrI	ACTGG	5 cut(s)	1038, 1513, 2012, 3206, 3212
BssAI	RCCGGY	2 cut(s)	442, 2976
BssECI	CCNNGG	8 cut(s)	307, 488, 547, 553, 615, 681, 997, 3026
BssNAI	GTATAC	1 cut(s)	2544
BssNI	GRCGYC	1 cut(s)	3270
BssSI	CACGAG	2 cut(s)	522, 1960
BssT1I	CCWWGG	4 cut(s)	488, 547, 615, 681
Bst1107I	GTATAC	1 cut(s)	2544
Bst2BI	CACGAG	2 cut(s)	522, 1960
Bst2UI	CCWGG	7 cut(s)	369, 998, 2143, 2234, 2967, 3027, 3261
Bst4CI	ACNGT	9 cut(s)	90, 513, 1246, 1257, 1981, 2370, 2457, 2541, 3037
Bst6I	CTCTTC	7 cut(s)	319, 1149, 1923, 2313, 2403, 2469, 2517
BstACI	GRCGYC	1 cut(s)	3270
BstAPI	GCANNNNNTGC	2 cut(s)	298, 2624
BstAUI	TGTACA	2 cut(s)	2427, 2680
BstBAI	YACGTR	2 cut(s)	1388, 2990
BstC8I	GCNNGC	7 cut(s)	402, 406, 1971, 2067, 2828, 2982, 3127
BstDSI	CCRYGG	1 cut(s)	307
BstEII	GGTNACC	1 cut(s)	2228
BstF5I	GGATG	7 cut(s)	31, 241, 625, 1528, 1631, 1971, 3036
BstFNI	CGCG	2 cut(s)	309, 3177
BstHHI	GCGC	3 cut(s)	465, 2164, 3179
BstMAI	GTCTC	7 cut(s)	100, 422, 574, 823, 958, 1361, 2849
BstNI	CCWGG	7 cut(s)	369, 998, 2143, 2234, 2967, 3027, 3261
BstNSI	RCATGY	4 cut(s)	386, 2291, 2687, 3129
BstPI	GGTNACC	1 cut(s)	2228
BstSCI	CCNGG	9 cut(s)	101, 367, 695, 996, 2141, 2232, 2965, 3025, 3259
BstSFI	CTRYAG	6 cut(s)	477, 1007, 1752, 2453, 3222, 3334
BstSLI	GKGCMC	1 cut(s)	1343
BstUI	CGCG	2 cut(s)	309, 3177
BstV2I	GAAGAC	1 cut(s)	679
BstX2I	RGATCY	4 cut(s)	1210, 1222, 1279, 1938
BstXI	CCANNNNNNTGG	1 cut(s)	1587
BstYI	RGATCY	4 cut(s)	1210, 1222, 1279, 1938
BstZ17I	GTATAC	1 cut(s)	2544
BsuRI	GGCC	2 cut(s)	395, 552
BtgI	CCRYGG	1 cut(s)	307
BtgZI	GCGATG	1 cut(s)	279
BtsCI	GGATG	7 cut(s)	31, 241, 625, 1528, 1631, 1971, 3036
BtsI	GCAGTG	3 cut(s)	19, 474, 3012
BtsIMutI	CAGTG	5 cut(s)	19, 474, 2019, 3012, 3199
BveI	ACCTGC	3 cut(s)	470, 2216, 2632
Cac8I	GCNNGC	7 cut(s)	402, 406, 1971, 2067, 2828, 2982, 3127
CaiI	CAGNNNCTG	1 cut(s)	2624
CciI	TCATGA	2 cut(s)	1351, 2419
CfoI	GCGC	3 cut(s)	465, 2164, 3179
Cfr10I	RCCGGY	2 cut(s)	442, 2976
Cfr13I	GGNCC	2 cut(s)	2008, 2357
Cfr42I	CCGCGG	1 cut(s)	310
CseI	GACGC	3 cut(s)	459, 777, 3259
CsiI	ACCWGGT	1 cut(s)	2141
Csp6I	GTAC	5 cut(s)	1041, 1749, 2428, 2681, 3397
CspAI	ACCGGT	1 cut(s)	442
CviQI	GTAC	5 cut(s)	1041, 1749, 2428, 2681, 3397
DraI	TTTAAA	3 cut(s)	1183, 1299, 2865
DrdI	GACNNNNNNGTC	1 cut(s)	815
DseDI	GACNNNNNNGTC	1 cut(s)	815
Eam1104I	CTCTTC	7 cut(s)	319, 1149, 1923, 2313, 2403, 2469, 2517
EarI	CTCTTC	7 cut(s)	319, 1149, 1923, 2313, 2403, 2469, 2517
Ecl136II	GAGCTC	2 cut(s)	31, 1916
Eco130I	CCWWGG	4 cut(s)	488, 547, 615, 681
Eco147I	AGGCCT	1 cut(s)	552
Eco24I	GRGCYC	2 cut(s)	33, 1918
Eco31I	GGTCTC	2 cut(s)	100, 2849
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	2 cut(s)	2008, 2357
Eco53kI	GAGCTC	2 cut(s)	31, 1916
Eco57I	CTGAAG	6 cut(s)	68, 900, 993, 1431, 1904, 2921
Eco72I	CACGTG	1 cut(s)	2990
Eco88I	CYCGRG	2 cut(s)	280, 1911
Eco91I	GGTNACC	1 cut(s)	2228
EcoICRI	GAGCTC	2 cut(s)	31, 1916
EcoO109I	RGGNCCY	2 cut(s)	2008, 2357
EcoO65I	GGTNACC	1 cut(s)	2228
EcoRI	GAATTC	2 cut(s)	1317, 3297
EcoRII	CCWGG	7 cut(s)	367, 996, 2141, 2232, 2965, 3025, 3259
EcoRV	GATATC	1 cut(s)	844
EcoT14I	CCWWGG	4 cut(s)	488, 547, 615, 681
EcoT22I	ATGCAT	2 cut(s)	914, 1176
EcoT38I	GRGCYC	2 cut(s)	33, 1918
ErhI	CCWWGG	4 cut(s)	488, 547, 615, 681
Esp3I	CGTCTC	1 cut(s)	823
FalI	AAGNNNNNCTT	8 cut(s)	1584, 1616, 2397, 2429, 2904, 2936, 3084, 3116
FaqI	GGGAC	6 cut(s)	368, 510, 904, 1994, 2343, 3252
FauI	CCCGC	1 cut(s)	1962
FauNDI	CATATG	1 cut(s)	1762
FbaI	TGATCA	1 cut(s)	2565
FblI	GTMKAC	2 cut(s)	216, 2543
FokI	GGATG	7 cut(s)	38, 248, 632, 1535, 1618, 1978, 3043
FriOI	GRGCYC	2 cut(s)	33, 1918
FspBI	CTAG	7 cut(s)	548, 1265, 1346, 1359, 2066, 2315, 3323
FspI	TGCGCA	1 cut(s)	2163
GlaI	GCGC	3 cut(s)	464, 2163, 3178
GsaI	CCCAGC	1 cut(s)	3070
GsuI	CTGGAG	4 cut(s)	20, 1650, 2255, 3243
HaeIII	GGCC	2 cut(s)	395, 552
HapII	CCGG	5 cut(s)	103, 146, 443, 697, 2977
HgaI	GACGC	3 cut(s)	459, 777, 3259
HhaI	GCGC	3 cut(s)	465, 2164, 3179
Hin1I	GRCGYC	1 cut(s)	3270
Hin6I	GCGC	3 cut(s)	463, 2162, 3177
HinP1I	GCGC	3 cut(s)	463, 2162, 3177
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	1854
HpaII	CCGG	5 cut(s)	103, 146, 443, 697, 2977
HphI	GGTGA	6 cut(s)	493, 695, 1079, 1523, 2222, 3033
Hpy166II	GTNNAC	6 cut(s)	217, 388, 474, 1341, 2285, 2544
Hpy8I	GTNNAC	6 cut(s)	217, 388, 474, 1341, 2285, 2544
Hpy99I	CGWCG	7 cut(s)	221, 224, 227, 230, 344, 365, 3275
HpyCH4III	ACNGT	9 cut(s)	90, 513, 1246, 1257, 1981, 2370, 2457, 2541, 3037
HpyCH4IV	ACGT	5 cut(s)	123, 295, 1144, 1387, 2989
HpySE526I	ACGT	5 cut(s)	123, 295, 1144, 1387, 2989
Hsp92I	GRCGYC	1 cut(s)	3270
HspAI	GCGC	3 cut(s)	463, 2162, 3177
KflI	GGGWCCC	2 cut(s)	2008, 2357
Ksp22I	TGATCA	1 cut(s)	2565
KspI	CCGCGG	1 cut(s)	310
LguI	GCTCTTC	3 cut(s)	319, 1923, 2403
LmnI	GCTCC	6 cut(s)	36, 52, 1261, 1891, 2236, 2615
MabI	ACCWGGT	1 cut(s)	2141
MaeI	CTAG	7 cut(s)	548, 1265, 1346, 1359, 2066, 2315, 3323
MaeII	ACGT	5 cut(s)	123, 295, 1144, 1387, 2989
MaeIII	GTNAC	8 cut(s)	2228, 2483, 2802, 2944, 3039, 3084, 3197, 3338
MbiI	CCGCTC	1 cut(s)	9
MfeI	CAATTG	2 cut(s)	788, 834
MflI	RGATCY	4 cut(s)	1210, 1222, 1279, 1938
MhlI	GDGCHC	4 cut(s)	33, 742, 1343, 1918
MmeI	TCCRAC	5 cut(s)	624, 635, 1239, 1257, 1672
Mph1103I	ATGCAT	2 cut(s)	914, 1176
MseI	TTAA	9 cut(s)	453, 750, 857, 1182, 1298, 1553, 1949, 2126, 2864
MspA1I	CMGCKG	4 cut(s)	261, 309, 722, 1614
MspI	CCGG	5 cut(s)	103, 146, 443, 697, 2977
MspR9I	CCNGG	9 cut(s)	103, 369, 697, 998, 2143, 2234, 2967, 3027, 3261
MunI	CAATTG	2 cut(s)	788, 834
Mva1269I	GAATGC	4 cut(s)	426, 1008, 1583, 2733
MvaI	CCWGG	7 cut(s)	369, 998, 2143, 2234, 2967, 3027, 3261
MvnI	CGCG	2 cut(s)	309, 3177
NciI	CCSGG	2 cut(s)	103, 697
NdeI	CATATG	1 cut(s)	1762
NheI	GCTAGC	1 cut(s)	2065
NlaIV	GGNNCC	7 cut(s)	305, 1016, 1281, 2009, 2010, 2358, 2359
NmeAIII	GCCGAG	2 cut(s)	421, 534
NmuCI	GTSAC	6 cut(s)	2228, 2483, 2802, 2944, 3039, 3197
NsbI	TGCGCA	1 cut(s)	2163
NsiI	ATGCAT	2 cut(s)	914, 1176
NspI	RCATGY	4 cut(s)	386, 2291, 2687, 3129
PaeI	GCATGC	1 cut(s)	3129
PaeR7I	CTCGAG	2 cut(s)	280, 1911
PagI	TCATGA	2 cut(s)	1351, 2419
PaqCI	CACCTGC	1 cut(s)	2632
PceI	AGGCCT	1 cut(s)	552
PciI	ACATGT	1 cut(s)	2287
PciSI	GCTCTTC	3 cut(s)	319, 1923, 2403
PcsI	WCGNNNNNNNCGW	4 cut(s)	222, 225, 412, 421
PctI	GAATGC	4 cut(s)	426, 1008, 1583, 2733
PflFI	GACNNNGTC	2 cut(s)	2143, 3037
PfoI	TCCNGGA	4 cut(s)	101, 695, 2965, 3259
PinAI	ACCGGT	1 cut(s)	442
PmaCI	CACGTG	1 cut(s)	2990
PmlI	CACGTG	1 cut(s)	2990
Ppu21I	YACGTR	2 cut(s)	1388, 2990
PpuMI	RGGWCCY	2 cut(s)	2008, 2357
PscI	ACATGT	1 cut(s)	2287
Psp124BI	GAGCTC	2 cut(s)	33, 1918
Psp5II	RGGWCCY	2 cut(s)	2008, 2357
Psp6I	CCWGG	7 cut(s)	367, 996, 2141, 2232, 2965, 3025, 3259
PspCI	CACGTG	1 cut(s)	2990
PspEI	GGTNACC	1 cut(s)	2228
PspFI	CCCAGC	1 cut(s)	3066
PspGI	CCWGG	7 cut(s)	367, 996, 2141, 2232, 2965, 3025, 3259
PspN4I	GGNNCC	7 cut(s)	305, 1016, 1281, 2009, 2010, 2358, 2359
PspPI	GGNCC	2 cut(s)	2008, 2357
PspPPI	RGGWCCY	2 cut(s)	2008, 2357
PspXI	VCTCGAGB	1 cut(s)	1911
PstI	CTGCAG	2 cut(s)	481, 1011
PstNI	CAGNNNCTG	1 cut(s)	2624
PsuI	RGATCY	4 cut(s)	1210, 1222, 1279, 1938
PsyI	GACNNNGTC	2 cut(s)	2143, 3037
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	5 cut(s)	1042, 1750, 2429, 2682, 3398
RsaNI	GTAC	5 cut(s)	1041, 1749, 2428, 2681, 3397
SacI	GAGCTC	2 cut(s)	33, 1918
SacII	CCGCGG	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	215
SapI	GCTCTTC	3 cut(s)	319, 1923, 2403
SaqAI	TTAA	9 cut(s)	453, 750, 857, 1182, 1298, 1553, 1949, 2126, 2864
Sau96I	GGNCC	2 cut(s)	2008, 2357
ScaI	AGTACT	1 cut(s)	1750
ScrFI	CCNGG	9 cut(s)	103, 369, 697, 998, 2143, 2234, 2967, 3027, 3261
SduI	GDGCHC	4 cut(s)	33, 742, 1343, 1918
SexAI	ACCWGGT	1 cut(s)	2141
SfcI	CTRYAG	6 cut(s)	477, 1007, 1752, 2453, 3222, 3334
Sfr274I	CTCGAG	2 cut(s)	280, 1911
Sfr303I	CCGCGG	1 cut(s)	310
SgrBI	CCGCGG	1 cut(s)	310
SinI	GGWCC	2 cut(s)	2008, 2357
SlaI	CTCGAG	2 cut(s)	280, 1911
SmiI	ATTTAAAT	1 cut(s)	1299
SmlI	CTYRAG	6 cut(s)	280, 577, 1331, 1911, 2837, 3101
SmoI	CTYRAG	6 cut(s)	280, 577, 1331, 1911, 2837, 3101
SphI	GCATGC	1 cut(s)	3129
SseBI	AGGCCT	1 cut(s)	552
SspI	AATATT	3 cut(s)	1810, 2392, 2849
SspMI	CTAG	7 cut(s)	548, 1265, 1346, 1359, 2066, 2315, 3323
SstI	GAGCTC	2 cut(s)	33, 1918
StuI	AGGCCT	1 cut(s)	552
StyD4I	CCNGG	9 cut(s)	101, 367, 695, 996, 2141, 2232, 2965, 3025, 3259
StyI	CCWWGG	4 cut(s)	488, 547, 615, 681
SwaI	ATTTAAAT	1 cut(s)	1299
TaaI	ACNGT	9 cut(s)	90, 513, 1246, 1257, 1981, 2370, 2457, 2541, 3037
TaiI	ACGT	5 cut(s)	126, 298, 1147, 1390, 2992
TatI	WGTACW	5 cut(s)	1040, 1748, 2427, 2680, 3396
TauI	GCSGC	9 cut(s)	12, 184, 187, 190, 193, 208, 264, 312, 2065
Tru1I	TTAA	9 cut(s)	453, 750, 857, 1182, 1298, 1553, 1949, 2126, 2864
Tru9I	TTAA	9 cut(s)	453, 750, 857, 1182, 1298, 1553, 1949, 2126, 2864
TscAI	CASTG	5 cut(s)	19, 481, 2019, 3012, 3206
TseFI	GTSAC	6 cut(s)	2228, 2483, 2802, 2944, 3039, 3197
Tsp45I	GTSAC	6 cut(s)	2228, 2483, 2802, 2944, 3039, 3197
TspDTI	ATGAA	7 cut(s)	679, 918, 1368, 1740, 1779, 2804, 3291
TspGWI	ACGGA	4 cut(s)	1661, 1723, 2044, 2063
TspRI	CASTG	5 cut(s)	19, 481, 2019, 3012, 3206
Tth111I	GACNNNGTC	2 cut(s)	2143, 3037
VneI	GTGCAC	1 cut(s)	1339
VpaK11BI	GGWCC	2 cut(s)	2008, 2357
XapI	RAATTY	6 cut(s)	671, 1317, 1619, 2560, 3297, 3415
XceI	RCATGY	4 cut(s)	386, 2291, 2687, 3129
XhoI	CTCGAG	2 cut(s)	280, 1911
XmaJI	CCTAGG	1 cut(s)	547
XmiI	GTMKAC	2 cut(s)	216, 2543
XspI	CTAG	7 cut(s)	548, 1265, 1346, 1359, 2066, 2315, 3323
ZrmI	AGTACT	1 cut(s)	1750
Zsp2I	ATGCAT	2 cut(s)	914, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.