Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003765

Physical Location & Seq

Genomic Coordinates Reverse (-)

16166516 .. 16168301

Gene Structure 1786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0097700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAGTTTGCCTAAGCTTGCGTTGAGATCTCTGAGGCCGCTGCACTCCAGAGTCCTCGCTCGCAGTCGTTTTGTCCCCTCACACGACCACGGCGATGATGTCATCAACCTCAGTCCTCCCCCGATTCATTGGAGTGGTGGGTTTCTGGTGCCTAATACCCAGGCGGTTGTGATCGAGCGATTTGGAAAGTACCCCAAGGTGTTGTGGCCTGGAATACGTCGCTTAATTCCATTTGTTGATAAAATCGTAAACGTGGTTTCCTTGAGAGAAAAGACTATTCATATTCCTGCGCAGAACGCTACGACCAGCAATTCTATTCCCCTTTCGGTTTCTGCGGAATTTACAATGATGATTGCGGACCCTCTGCTGGCCTCGTATGAGGTTGACAATCCCGTGGTCGAGACTATTGCTCTTGCCCAGCGTACCCTACGTTCTGTAATTGGGAAAGTCACTTTCGAGCACATAGTACAGAATCATGGTTACTTTCTTGATCGTCTAATTTGCGCACTCATCGAGGCAGGGAGATGGGGAATTGCCTGTCGGAGCTTTGACATAAATGACATAGCTGTTTCACCTGAATTTAAAAAAGCTCTTGAGGACCGGAAGGCAGAGAAACAAAAGAGAGGATTGGCAGAGGTTCTTAGCATTTCGTCTAATGCCCTGACAAGGGTTAGAGGTGAGGGTAAAGCTATTCCAGACACCTGTTTGCTCCGTGCTTCTCAATTCCATGCACCAAACCGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0030054 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043230 GO:0043933 GO:0044085 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0055044 GO:0060321 GO:0065003 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

Sec5

Protein Analysis

248

Amino Acids

27.58

Weight (kDa)

9.74

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	50 - 210	3.9e-22	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21170 AT1G21170 AT1G76850
fragaria_vesca	FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280
malus_domestica	MD02G1241200.v1.1 MD02G1241400.v1.1 MD07G1075500.v1.1
prunus_persica	Prupe.8G058700_v2.0.a1 Prupe.8G058700_v2.0.a1
pyrus_communis	pycom02g20640 pycom02g20660 pycom02g20670 pycom02g20680 pycom02g20750 pycom02g20760 pycom07g05950
rosa_chinensis	RchiOBHm_Chr1g0332001
rosa_laevigata	RLG00000029699
rosa_multiflora	Rmu_co8474765.1_g000001 Rmu_sc0003358.1_g000014
rosa_roxburghii	Rroxscaffold_4G00318510
rosa_rugosa	Rorug01G0097700
rosa_samantha	Rh1AG121600 Rh1BG093100 Rh1CG116400 Rh1DG127300
rosa_wichuraiana	Rw1G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	291, 505
AccB1I	GGYRCC	1 cut(s)	148
AciI	CCGC	4 cut(s)	38, 164, 335, 356
AcsI	RAATTY	2 cut(s)	338, 578
AfaI	GTAC	3 cut(s)	191, 424, 468
AfiI	CCNNNNNNNGG	3 cut(s)	367, 666, 667
AjnI	CCWGG	2 cut(s)	159, 208
AluBI	AGCT	5 cut(s)	16, 546, 566, 590, 689
AluI	AGCT	5 cut(s)	16, 546, 566, 590, 689
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	3 cut(s)	35, 206, 369
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	2 cut(s)	338, 578
AspLEI	GCGC	2 cut(s)	292, 506
AspS9I	GGNCC	2 cut(s)	358, 598
AsuHPI	GGTGA	2 cut(s)	564, 689
AvaII	GGWCC	2 cut(s)	358, 598
BanI	GGYRCC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	519
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	2 cut(s)	161, 210
BcoDI	GTCTC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	2 cut(s)	38, 41
BlsI	GCNGC	2 cut(s)	39, 42
Bme1390I	CCNGG	2 cut(s)	161, 210
Bme18I	GGWCC	2 cut(s)	358, 598
BmgT120I	GGNCC	2 cut(s)	358, 598
BmiI	GGNNCC	2 cut(s)	150, 360
BmrFI	CCNGG	2 cut(s)	161, 210
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	2 cut(s)	283, 614
BsaJI	CCNNGG	4 cut(s)	88, 159, 195, 393
BsaWI	WCCGGW	2 cut(s)	600, 738
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 666, 667
BseBI	CCWGG	2 cut(s)	161, 210
BseDI	CCNNGG	4 cut(s)	88, 159, 195, 393
BseLI	CCNNNNNNNGG	3 cut(s)	367, 666, 667
BseMII	CTCAG	2 cut(s)	23, 124
BseXI	GCAGC	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	417
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	37, 208, 371
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	2 cut(s)	601, 739
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	367, 666, 667
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	37, 208, 371
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	3 cut(s)	26, 171, 490
BspACI	CCGC	4 cut(s)	38, 164, 335, 356
BspANI	GGCC	3 cut(s)	37, 208, 371
BspCNI	CTCAG	2 cut(s)	24, 123
BspLI	GGNNCC	2 cut(s)	150, 360
BspT107I	GGYRCC	1 cut(s)	148
BssECI	CCNNGG	4 cut(s)	88, 159, 195, 393
BssMI	GATC	3 cut(s)	26, 171, 490
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	161, 210
BstC8I	GCNNGC	3 cut(s)	18, 61, 369
BstDEI	CTNAG	5 cut(s)	12, 32, 110, 641, 744
BstDSI	CCRYGG	2 cut(s)	88, 393
BstHHI	GCGC	2 cut(s)	292, 506
BstKTI	GATC	3 cut(s)	29, 174, 493
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	3 cut(s)	26, 171, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	2 cut(s)	161, 210
BstSCI	CCNGG	2 cut(s)	159, 208
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	37, 208, 371
BtgI	CCRYGG	2 cut(s)	88, 393
BtgZI	GCGATG	1 cut(s)	108
Cac8I	GCNNGC	3 cut(s)	18, 61, 369
CfoI	GCGC	2 cut(s)	292, 506
Cfr13I	GGNCC	2 cut(s)	358, 598
Csp6I	GTAC	3 cut(s)	190, 423, 467
CviAII	CATG	2 cut(s)	476, 728
CviJI	RGCY	8 cut(s)	16, 37, 208, 371, 546, 566, 590, 689
CviKI_1	RGCY	8 cut(s)	16, 37, 208, 371, 546, 566, 590, 689
CviQI	GTAC	3 cut(s)	190, 423, 467
DdeI	CTNAG	5 cut(s)	12, 32, 110, 641, 744
DpnI	GATC	3 cut(s)	28, 173, 492
DpnII	GATC	3 cut(s)	26, 171, 490
DraI	TTTAAA	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	358, 598
EcoRII	CCWGG	2 cut(s)	159, 208
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	479, 731
FaiI	YATR	7 cut(s)	282, 378, 464, 477, 554, 563, 729
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	2 cut(s)	475, 727
Fnu4HI	GCNGC	2 cut(s)	38, 41
Fsp4HI	GCNGC	2 cut(s)	38, 41
FspI	TGCGCA	2 cut(s)	291, 505
GlaI	GCGC	2 cut(s)	291, 505
GluI	GCNGC	2 cut(s)	38, 41
GsaI	CCCAGC	1 cut(s)	421
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	3 cut(s)	37, 208, 371
HapII	CCGG	2 cut(s)	601, 739
HhaI	GCGC	2 cut(s)	292, 506
Hin1II	CATG	2 cut(s)	479, 731
Hin6I	GCGC	2 cut(s)	290, 504
HinP1I	GCGC	2 cut(s)	290, 504
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	3 cut(s)	51, 124, 472
HpaII	CCGG	2 cut(s)	601, 739
HphI	GGTGA	2 cut(s)	564, 689
Hpy166II	GTNNAC	2 cut(s)	250, 385
Hpy188I	TCNGA	2 cut(s)	33, 543
Hpy188III	TCNNGA	5 cut(s)	48, 400, 488, 593, 695
Hpy8I	GTNNAC	2 cut(s)	250, 385
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	598
HpyCH4IV	ACGT	3 cut(s)	217, 252, 430
HpyCH4V	TGCA	2 cut(s)	43, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	5 cut(s)	12, 32, 110, 641, 744
HpySE526I	ACGT	3 cut(s)	217, 252, 430
Hsp92II	CATG	2 cut(s)	479, 731
HspAI	GCGC	2 cut(s)	290, 504
Kzo9I	GATC	3 cut(s)	26, 171, 490
LmnI	GCTCC	2 cut(s)	543, 714
Lsp1109I	GCAGC	1 cut(s)	27
MaeII	ACGT	3 cut(s)	217, 252, 430
MaeIII	GTNAC	2 cut(s)	448, 479
MalI	GATC	3 cut(s)	28, 173, 492
MboI	GATC	3 cut(s)	26, 171, 490
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	8 cut(s)	225, 310, 338, 438, 498, 531, 578, 722
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	521
MseI	TTAA	2 cut(s)	224, 582
MslI	CAYNNNNRTG	2 cut(s)	93, 132
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	2 cut(s)	601, 739
MspR9I	CCNGG	2 cut(s)	161, 210
MvaI	CCWGG	2 cut(s)	161, 210
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	3 cut(s)	26, 171, 490
NlaIII	CATG	2 cut(s)	479, 731
NlaIV	GGNNCC	2 cut(s)	150, 360
NmuCI	GTSAC	1 cut(s)	448
NsbI	TGCGCA	2 cut(s)	291, 505
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	124, 472
PkrI	GCNGC	2 cut(s)	39, 42
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	159, 208
PspFI	CCCAGC	1 cut(s)	417
PspGI	CCWGG	2 cut(s)	159, 208
PspN4I	GGNNCC	2 cut(s)	150, 360
PspPI	GGNCC	2 cut(s)	358, 598
PsrI	GAACNNNNNNTAC	2 cut(s)	415, 447
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	3 cut(s)	191, 424, 468
RsaNI	GTAC	3 cut(s)	190, 423, 467
RseI	CAYNNNNRTG	2 cut(s)	93, 132
SaqAI	TTAA	2 cut(s)	224, 582
SatI	GCNGC	2 cut(s)	38, 41
Sau3AI	GATC	3 cut(s)	26, 171, 490
Sau96I	GGNCC	2 cut(s)	358, 598
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	161, 210
SduI	GDGCHC	1 cut(s)	462
SinI	GGWCC	2 cut(s)	358, 598
SmiMI	CAYNNNNRTG	2 cut(s)	93, 132
SmlI	CTYRAG	2 cut(s)	262, 593
SmoI	CTYRAG	2 cut(s)	262, 593
Sse9I	AATT	8 cut(s)	225, 310, 338, 438, 498, 531, 578, 722
SsiI	CCGC	4 cut(s)	38, 164, 335, 356
StyD4I	CCNGG	2 cut(s)	159, 208
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	3 cut(s)	220, 255, 433
TaqI	TCGA	4 cut(s)	174, 399, 456, 513
TasI	AATT	8 cut(s)	225, 310, 338, 438, 498, 531, 578, 722
TatI	WGTACW	1 cut(s)	466
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	2 cut(s)	124, 472
Tru1I	TTAA	2 cut(s)	224, 582
Tru9I	TTAA	2 cut(s)	224, 582
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	2 cut(s)	116, 269
TspGWI	ACGGA	1 cut(s)	701
VpaK11BI	GGWCC	2 cut(s)	358, 598
XapI	RAATTY	2 cut(s)	338, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.