Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003765

Physical Location & Seq

Genomic Coordinates Forward (+)

18743865 .. 18747024

Gene Structure 3160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g20680.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGTTGTACAAAAATTACAAGCACATCTGGCTACAGTCTAGGTATGGAAAGAGAGGAGGAGGATGGTGACGTACAAGACCTAGTTATGTCGTTTTCTGGTCTTGAAGAGAAGGTCCTTGAGCAATATACTTTTGCTAAGGCAAATTTGATCAGAACTGCTGCCTGGAACTATTTGTTGGATTCTGGTGTTCAATGGGGAGCAGCACCTGCTGTAAAAGGTGTGCGTGATGCTGCTGTGGAGTTACTGCACACTTTGGTAGCTGTGCATGCAGAGGTATTCTCTGGTGCGAAGCCCTTATTGGACAAGACACTTGGCATTCTTGTTGAAGGTCTAATTGACACGTTTATCAGCCTGTTCCATGAATATGAATCGAAAGATCTTAGGTCACTTGATGCAAATGGTTTCTGTCAGCTAATGCTTGAGCTTGAATACTTCGAGACTGTATTAAATCCATATTTAACTGCGGGTGCAAGGGAGTCTTTGAAGTCCTTACAAGGTGTACTTCTCGATAAAGCCACTGAGAATGTATCAGAAAATGTGGATAATCCAGGGCATAATCGACGAGCAACACGTGGAAGTGAAGAGGCGGCTGATGATAGACAGGATGGGATGAGTGTGTCACCCGATGACCTCATTGCACTTGCCCAGCAGTATAGCTCTGAATTACTTCAAGCAGAGCTTGAGAGGACTCACATCAACACGGCATGTTTTGTGGAGTCAATTCCGTTAGACTCAGTACCTGAATCAGCTAAACGCGCTTATGCTTCGTTCAGGGGACCACTAGATTCTCCGAGCAGAAACTACAAAGGCAACACTGGATCCCCAAGCTACTCGCGGAATAGGCGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0030054 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043230 GO:0043933 GO:0044085 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0055044 GO:0060321 GO:0065003 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

Sec5

Protein Analysis

285

Amino Acids

31.28

Weight (kDa)

4.81

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21170 AT1G21170 AT1G76850
fragaria_vesca	FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280
malus_domestica	MD02G1241200.v1.1 MD02G1241400.v1.1 MD07G1075500.v1.1
prunus_persica	Prupe.8G058700_v2.0.a1 Prupe.8G058700_v2.0.a1
pyrus_communis	pycom02g20640 pycom02g20660 pycom02g20670 pycom02g20680 pycom02g20750 pycom02g20760 pycom07g05950
rosa_chinensis	RchiOBHm_Chr1g0332001
rosa_laevigata	RLG00000029699
rosa_multiflora	Rmu_co8474765.1_g000001 Rmu_sc0003358.1_g000014
rosa_roxburghii	Rroxscaffold_4G00318510
rosa_rugosa	Rorug01G0097700
rosa_samantha	Rh1AG121600 Rh1BG093100 Rh1CG116400 Rh1DG127300
rosa_wichuraiana	Rw1G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	217
Acc36I	ACCTGC	1 cut(s)	217
AccII	CGCG	2 cut(s)	759, 838
AciI	CCGC	3 cut(s)	467, 590, 838
AclWI	GGATC	2 cut(s)	816, 829
AcsI	RAATTY	1 cut(s)	145
AcvI	CACGTG	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	847
AfaI	GTAC	4 cut(s)	10, 75, 504, 741
AflIII	ACRYGT	2 cut(s)	342, 572
AgsI	TTSAA	6 cut(s)	107, 194, 329, 431, 487, 674
AjnI	CCWGG	2 cut(s)	164, 550
AjuI	GAANNNNNNNTTGG	4 cut(s)	161, 193, 284, 316
AluBI	AGCT	7 cut(s)	263, 415, 427, 660, 682, 752, 831
AluI	AGCT	7 cut(s)	263, 415, 427, 660, 682, 752, 831
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	2 cut(s)	816, 829
AlwNI	CAGNNNCTG	2 cut(s)	209, 743
ApeKI	GCWGC	3 cut(s)	161, 203, 233
ApoI	RAATTY	1 cut(s)	145
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	2 cut(s)	115, 779
AsuHPI	GGTGA	2 cut(s)	80, 615
AvaII	GGWCC	2 cut(s)	115, 779
BamHI	GGATCC	1 cut(s)	821
BbrPI	CACGTG	1 cut(s)	575
BbvI	GCAGC	3 cut(s)	148, 215, 220
BccI	CCATC	2 cut(s)	59, 602
BceAI	ACGGC	1 cut(s)	720
BciT130I	CCWGG	2 cut(s)	166, 552
BclI	TGATCA	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	3 cut(s)	41, 83, 785
BfmI	CTRYAG	1 cut(s)	34
BfuAI	ACCTGC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	4 cut(s)	162, 204, 234, 591
BlsI	GCNGC	4 cut(s)	163, 205, 235, 592
Bme1390I	CCNGG	2 cut(s)	166, 552
Bme18I	GGWCC	2 cut(s)	115, 779
BmgT120I	GGNCC	2 cut(s)	115, 779
BmiI	GGNNCC	2 cut(s)	780, 823
BmrFI	CCNGG	2 cut(s)	166, 552
BmsI	GCATC	2 cut(s)	220, 385
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	3 cut(s)	140, 443, 704
BsaAI	YACGTR	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	847
BsaJI	CCNNGG	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	823
Bse3DI	GCAATG	1 cut(s)	636
BseBI	CCWGG	2 cut(s)	166, 552
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	3 cut(s)	70, 613, 618
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	2 cut(s)	513, 750
BseNI	ACTGG	1 cut(s)	823
BseRI	GAGGAG	2 cut(s)	71, 74
BseXI	GCAGC	3 cut(s)	148, 215, 220
BseYI	CCCAGC	1 cut(s)	648
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	2 cut(s)	759, 838
BslFI	GGGAC	1 cut(s)	792
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	792
BsmI	GAATGC	1 cut(s)	318
Bsp1407I	TGTACA	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	150, 379, 821
BspACI	CCGC	3 cut(s)	467, 590, 838
BspCNI	CTCAG	2 cut(s)	514, 749
BspFNI	CGCG	2 cut(s)	759, 838
BspLI	GGNNCC	2 cut(s)	780, 823
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	816, 829
BsrDI	GCAATG	1 cut(s)	636
BsrGI	TGTACA	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	823
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	3 cut(s)	150, 379, 821
BssNI	GRCGYC	1 cut(s)	847
Bst2UI	CCWGG	2 cut(s)	166, 552
Bst4CI	ACNGT	2 cut(s)	38, 445
Bst6I	CTCTTC	2 cut(s)	102, 579
BstACI	GRCGYC	1 cut(s)	847
BstAPI	GCANNNNNTGC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	138, 383, 522, 736
BstF5I	GGATG	3 cut(s)	70, 613, 618
BstFNI	CGCG	2 cut(s)	759, 838
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	3 cut(s)	153, 382, 824
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	3 cut(s)	150, 379, 821
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 209, 269, 758, 844
BstNI	CCWGG	2 cut(s)	166, 552
BstNSI	RCATGY	2 cut(s)	272, 711
BstSCI	CCNGG	2 cut(s)	164, 550
BstSFI	CTRYAG	1 cut(s)	34
BstUI	CGCG	2 cut(s)	759, 838
BstV1I	GCAGC	3 cut(s)	148, 215, 220
BstX2I	RGATCY	2 cut(s)	379, 821
BstYI	RGATCY	2 cut(s)	379, 821
BtsCI	GGATG	3 cut(s)	70, 613, 618
BtsIMutI	CAGTG	2 cut(s)	519, 816
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	270
CaiI	CAGNNNCTG	2 cut(s)	209, 743
CfoI	GCGC	1 cut(s)	761
Cfr13I	GGNCC	2 cut(s)	115, 779
CseI	GACGC	1 cut(s)	836
Csp6I	GTAC	4 cut(s)	9, 74, 503, 740
CviAII	CATG	3 cut(s)	269, 362, 708
CviQI	GTAC	4 cut(s)	9, 74, 503, 740
DdeI	CTNAG	4 cut(s)	138, 383, 522, 736
DpnI	GATC	3 cut(s)	152, 381, 823
DpnII	GATC	3 cut(s)	150, 379, 821
Eam1104I	CTCTTC	2 cut(s)	102, 579
EarI	CTCTTC	2 cut(s)	102, 579
Eco47I	GGWCC	2 cut(s)	115, 779
Eco72I	CACGTG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	164, 550
FaeI	CATG	3 cut(s)	272, 365, 711
FalI	AAGNNNNNCTT	6 cut(s)	466, 498, 489, 521, 666, 698
FaqI	GGGAC	1 cut(s)	792
FatI	CATG	3 cut(s)	268, 361, 707
FauI	CCCGC	1 cut(s)	460
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	162, 204, 234, 591
FokI	GGATG	3 cut(s)	77, 620, 625
Fsp4HI	GCNGC	4 cut(s)	162, 204, 234, 591
FspBI	CTAG	3 cut(s)	41, 83, 785
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	4 cut(s)	162, 204, 234, 591
GsaI	CCCAGC	1 cut(s)	652
HgaI	GACGC	1 cut(s)	836
HhaI	GCGC	1 cut(s)	761
Hin1I	GRCGYC	1 cut(s)	847
Hin1II	CATG	3 cut(s)	272, 365, 711
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HinfI	GANTC	8 cut(s)	182, 371, 479, 691, 719, 734, 746, 788
HphI	GGTGA	2 cut(s)	80, 615
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	4 cut(s)	155, 535, 664, 795
Hpy188III	TCNNGA	3 cut(s)	104, 439, 509
Hpy8I	GTNNAC	1 cut(s)	503
Hpy99I	CGWCG	2 cut(s)	567, 852
HpyAV	CCTTC	2 cut(s)	106, 323
HpyCH4III	ACNGT	2 cut(s)	38, 445
HpyCH4IV	ACGT	3 cut(s)	72, 344, 574
HpyCH4V	TGCA	6 cut(s)	250, 268, 272, 398, 473, 641
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 209, 269, 758, 844
HpyF3I	CTNAG	4 cut(s)	138, 383, 522, 736
HpySE526I	ACGT	3 cut(s)	72, 344, 574
Hsp92I	GRCGYC	1 cut(s)	847
Hsp92II	CATG	3 cut(s)	272, 365, 711
HspAI	GCGC	1 cut(s)	759
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	150, 379, 821
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	3 cut(s)	148, 215, 220
LweI	GCATC	2 cut(s)	220, 385
MaeI	CTAG	3 cut(s)	41, 83, 785
MaeII	ACGT	3 cut(s)	72, 344, 574
MaeIII	GTNAC	4 cut(s)	68, 243, 387, 621
MalI	GATC	3 cut(s)	152, 381, 823
MboI	GATC	3 cut(s)	150, 379, 821
MboII	GAAGA	2 cut(s)	119, 596
MflI	RGATCY	2 cut(s)	379, 821
MluCI	AATT	5 cut(s)	15, 145, 336, 665, 723
MlyI	GAGTC	4 cut(s)	488, 685, 728, 728
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	49, 52, 55, 268, 580, 644, 681
MroXI	GAANNNNTTC	1 cut(s)	669
MseI	TTAA	2 cut(s)	449, 461
MslI	CAYNNNNRTG	1 cut(s)	366
MspR9I	CCNGG	2 cut(s)	166, 552
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	2 cut(s)	166, 552
MvnI	CGCG	2 cut(s)	759, 838
MwoI	GCNNNNNNNGC	5 cut(s)	30, 209, 269, 758, 844
NdeII	GATC	3 cut(s)	150, 379, 821
NlaIII	CATG	3 cut(s)	272, 365, 711
NlaIV	GGNNCC	2 cut(s)	780, 823
NmuCI	GTSAC	3 cut(s)	68, 387, 621
NspI	RCATGY	2 cut(s)	272, 711
PaeI	GCATGC	1 cut(s)	272
PaqCI	CACCTGC	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	571
PctI	GAATGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	669
PfeI	GAWTC	4 cut(s)	182, 371, 746, 788
PkrI	GCNGC	4 cut(s)	163, 205, 235, 592
PleI	GAGTC	4 cut(s)	487, 685, 727, 728
PmaCI	CACGTG	1 cut(s)	575
PmlI	CACGTG	1 cut(s)	575
PpsI	GAGTC	4 cut(s)	487, 685, 727, 728
Ppu21I	YACGTR	1 cut(s)	575
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	164, 550
PspCI	CACGTG	1 cut(s)	575
PspFI	CCCAGC	1 cut(s)	648
PspGI	CCWGG	2 cut(s)	164, 550
PspN4I	GGNNCC	2 cut(s)	780, 823
PspPI	GGNCC	2 cut(s)	115, 779
PspPPI	RGGWCCY	1 cut(s)	115
PstNI	CAGNNNCTG	2 cut(s)	209, 743
PsuI	RGATCY	2 cut(s)	379, 821
RsaI	GTAC	4 cut(s)	10, 75, 504, 741
RsaNI	GTAC	4 cut(s)	9, 74, 503, 740
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	449, 461
SatI	GCNGC	4 cut(s)	162, 204, 234, 591
Sau3AI	GATC	3 cut(s)	150, 379, 821
Sau96I	GGNCC	2 cut(s)	115, 779
SchI	GAGTC	4 cut(s)	488, 685, 728, 728
ScrFI	CCNGG	2 cut(s)	166, 552
SfaNI	GCATC	2 cut(s)	220, 385
SfcI	CTRYAG	1 cut(s)	34
SinI	GGWCC	2 cut(s)	115, 779
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	3 cut(s)	119, 422, 683
SmoI	CTYRAG	3 cut(s)	119, 422, 683
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	5 cut(s)	15, 145, 336, 665, 723
SsiI	CCGC	3 cut(s)	467, 590, 838
SspMI	CTAG	3 cut(s)	41, 83, 785
StyD4I	CCNGG	2 cut(s)	164, 550
TaaI	ACNGT	2 cut(s)	38, 445
TaiI	ACGT	3 cut(s)	75, 347, 577
TaqI	TCGA	5 cut(s)	374, 438, 510, 562, 850
TasI	AATT	5 cut(s)	15, 145, 336, 665, 723
TatI	WGTACW	2 cut(s)	8, 502
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	4 cut(s)	182, 371, 746, 788
Tru1I	TTAA	2 cut(s)	449, 461
Tru9I	TTAA	2 cut(s)	449, 461
TscAI	CASTG	2 cut(s)	526, 823
TseFI	GTSAC	3 cut(s)	68, 387, 621
TseI	GCWGC	3 cut(s)	161, 203, 233
Tsp45I	GTSAC	3 cut(s)	68, 387, 621
TspDTI	ATGAA	2 cut(s)	378, 384
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	2 cut(s)	526, 823
VpaK11BI	GGWCC	2 cut(s)	115, 779
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	2 cut(s)	272, 711
XmnI	GAANNNNTTC	1 cut(s)	669
XspI	CTAG	3 cut(s)	41, 83, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.