Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474765.1

Orthogroup ID

OG0003765

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1258

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474765.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

gttttttctggtgctaagccttttctggacaagacacttggcattcttgtagaaggtctaattgatacttttatcagcctgttccacgaaaacagcatgaaagagcttaggtcacttgacacaaatggtttctgccagctaatgcttgagcttgaatatttcgagaccattttaaatccatattttacacctgatgcaagagaggctctgaagtctttacaaggggtgcttctgaataaagcaactgaaagtgtgactgaaaatgtggagaatccaggacacaaccggcgagcaacacgtggaagtgaagatgcagtgccagatgataaacttccagggatgactgtgtcaccagatgatctgattgctcatgcccagcaatatagctctgagttacttcaagcagagcttgagaggactcacatcaatacagcttgctttgttgagtcaattcctttggacttagcaccagaatcagccaaacgcgcttatgcttcctttagggggtcactggattctcccagtagaaactatagaggcacacaaggagcagcatctccaagctactccaggaataggcgccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0030054 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043230 GO:0043933 GO:0044085 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0055044 GO:0060321 GO:0065003 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

Sec5

Protein Analysis

195

Amino Acids

21.68

Weight (kDa)

5.28

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21170 AT1G21170 AT1G76850
fragaria_vesca	FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280
malus_domestica	MD02G1241200.v1.1 MD02G1241400.v1.1 MD07G1075500.v1.1
prunus_persica	Prupe.8G058700_v2.0.a1 Prupe.8G058700_v2.0.a1
pyrus_communis	pycom02g20640 pycom02g20660 pycom02g20670 pycom02g20680 pycom02g20750 pycom02g20760 pycom07g05950
rosa_chinensis	RchiOBHm_Chr1g0332001
rosa_laevigata	RLG00000029699
rosa_multiflora	Rmu_co8474765.1_g000001 Rmu_sc0003358.1_g000014
rosa_roxburghii	Rroxscaffold_4G00318510
rosa_rugosa	Rorug01G0097700
rosa_samantha	Rh1AG121600 Rh1BG093100 Rh1CG116400 Rh1DG127300
rosa_wichuraiana	Rw1G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	579
AccII	CGCG	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	230
AcvI	CACGTG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	580
AfiI	CCNNNNNNNGG	2 cut(s)	504, 576
AflIII	ACRYGT	1 cut(s)	296
AgsI	TTSAA	2 cut(s)	155, 401
AjnI	CCWGG	3 cut(s)	274, 334, 569
AluBI	AGCT	7 cut(s)	106, 139, 151, 387, 409, 434, 564
AluI	AGCT	7 cut(s)	106, 139, 151, 387, 409, 434, 564
Alw26I	GTCTC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	551
AspLEI	GCGC	2 cut(s)	488, 582
AsuHPI	GGTGA	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	579
BbrPI	CACGTG	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	563
BciT130I	CCWGG	3 cut(s)	276, 336, 571
BcoDI	GTCTC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	532
BfoI	RGCGCY	1 cut(s)	583
BisI	GCNGC	1 cut(s)	552
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	3 cut(s)	276, 336, 571
BmiI	GGNNCC	1 cut(s)	581
BmrFI	CCNGG	3 cut(s)	276, 336, 571
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	3 cut(s)	184, 301, 563
BmuI	ACTGGG	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	553
Bpu10I	CCTNAGC	1 cut(s)	107
Bpu1102I	GCTNAGC	1 cut(s)	15
BpuEI	CTTGAG	2 cut(s)	167, 431
BsaAI	YACGTR	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	580
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	504, 576
Bse118I	RCCGGY	1 cut(s)	285
Bse1I	ACTGG	2 cut(s)	516, 522
BseBI	CCWGG	3 cut(s)	276, 336, 571
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	2 cut(s)	504, 576
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	516, 522
BseXI	GCAGC	1 cut(s)	563
BseYI	CCCAGC	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	486
BshNI	GGYRCC	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	504, 576
BsmAI	GTCTC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	358
Bsp1720I	GCTNAGC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	579
BspTNI	GGTCTC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	516, 522
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	1 cut(s)	358
BssNI	GRCGYC	1 cut(s)	580
Bst2UI	CCWGG	3 cut(s)	276, 336, 571
Bst4CI	ACNGT	1 cut(s)	346
BstACI	GRCGYC	1 cut(s)	580
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	137, 291, 436
BstDEI	CTNAG	4 cut(s)	15, 107, 390, 463
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	1 cut(s)	486
BstH2I	RGCGCY	1 cut(s)	583
BstHHI	GCGC	2 cut(s)	488, 582
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 485
BstNI	CCWGG	3 cut(s)	276, 336, 571
BstSCI	CCNGG	3 cut(s)	274, 334, 569
BstSFI	CTRYAG	1 cut(s)	532
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	563
BtsCI	GGATG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	321, 509
Cac8I	GCNNGC	3 cut(s)	137, 291, 436
CfoI	GCGC	2 cut(s)	488, 582
Cfr10I	RCCGGY	1 cut(s)	285
CviAII	CATG	2 cut(s)	97, 371
DdeI	CTNAG	4 cut(s)	15, 107, 390, 463
DinI	GGCGCC	1 cut(s)	581
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
DraI	TTTAAA	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	230
Eco72I	CACGTG	1 cut(s)	299
EcoRII	CCWGG	3 cut(s)	274, 334, 569
EgeI	GGCGCC	1 cut(s)	581
EheI	GGCGCC	1 cut(s)	581
FaeI	CATG	2 cut(s)	100, 374
FaiI	YATR	6 cut(s)	98, 181, 372, 384, 492, 534
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 393, 425
FatI	CATG	2 cut(s)	96, 370
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	1 cut(s)	552
GlaI	GCGC	2 cut(s)	487, 581
GluI	GCNGC	1 cut(s)	552
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	553
HaeII	RGCGCY	1 cut(s)	583
HapII	CCGG	1 cut(s)	286
HhaI	GCGC	2 cut(s)	488, 582
Hin1I	GRCGYC	1 cut(s)	580
Hin1II	CATG	2 cut(s)	100, 374
Hin6I	GCGC	2 cut(s)	486, 580
HinP1I	GCGC	2 cut(s)	486, 580
HinfI	GANTC	5 cut(s)	271, 418, 446, 473, 515
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	1 cut(s)	342
Hpy188I	TCNGA	4 cut(s)	210, 234, 363, 391
Hpy188III	TCNNGA	2 cut(s)	26, 163
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	197, 314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 485
HpyF3I	CTNAG	4 cut(s)	15, 107, 390, 463
HpySE526I	ACGT	1 cut(s)	298
Hsp92I	GRCGYC	1 cut(s)	580
Hsp92II	CATG	2 cut(s)	100, 374
HspAI	GCGC	2 cut(s)	486, 580
KasI	GGCGCC	1 cut(s)	579
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	548
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	3 cut(s)	184, 301, 563
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	5 cut(s)	111, 253, 348, 393, 507
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	1 cut(s)	320
MluCI	AATT	2 cut(s)	60, 450
Mly113I	GGCGCC	1 cut(s)	580
MlyI	GAGTC	2 cut(s)	412, 455
MnlI	CCTC	3 cut(s)	196, 408, 530
MseI	TTAA	1 cut(s)	173
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	3 cut(s)	276, 336, 571
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	3 cut(s)	276, 336, 571
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	2 cut(s)	203, 485
NarI	GGCGCC	1 cut(s)	580
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	100, 374
NlaIV	GGNNCC	1 cut(s)	581
NmuCI	GTSAC	4 cut(s)	111, 253, 348, 507
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	271, 473, 515
PflFI	GACNNNGTC	1 cut(s)	346
PfoI	TCCNGGA	2 cut(s)	274, 569
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	2 cut(s)	412, 454
PluTI	GGCGCC	1 cut(s)	583
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
PpsI	GAGTC	2 cut(s)	412, 454
Ppu21I	YACGTR	1 cut(s)	299
Psp6I	CCWGG	3 cut(s)	274, 334, 569
PspCI	CACGTG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	3 cut(s)	274, 334, 569
PspN4I	GGNNCC	1 cut(s)	581
PsyI	GACNNNGTC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	412, 455
ScrFI	CCNGG	3 cut(s)	276, 336, 571
SfaNI	GCATC	3 cut(s)	184, 301, 563
SfcI	CTRYAG	1 cut(s)	532
SfoI	GGCGCC	1 cut(s)	581
SmlI	CTYRAG	2 cut(s)	146, 410
SmoI	CTYRAG	2 cut(s)	146, 410
Sse9I	AATT	2 cut(s)	60, 450
SspDI	GGCGCC	1 cut(s)	579
SspI	AATATT	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	274, 334, 569
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	162
TasI	AATT	2 cut(s)	60, 450
TfiI	GAWTC	3 cut(s)	271, 473, 515
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	2 cut(s)	321, 516
TseFI	GTSAC	4 cut(s)	111, 253, 348, 507
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	4 cut(s)	111, 253, 348, 507
TspDTI	ATGAA	1 cut(s)	113
TspRI	CASTG	2 cut(s)	321, 516
Tth111I	GACNNNGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.