Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003765

Physical Location & Seq

Genomic Coordinates Reverse (-)

25170873 .. 25188942

Gene Structure 18070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG116400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2871 bp

ATGTCGAGCGGCAGTGAGGACGAGGATGAGCTCCTCCAGATGGCTCTGAAGGAGCAATCTCAGAGAGATGTGAATTATCAGAAGCCACCGTCAAGCAACTCCCGGAGACCCGTTGCCAATTACGTCCAAGCCCCTCCTCCTCCTCCGGCAGCAGCCAAGAAGTCCAATGGCAACAAGAAGCCGCCGCCGCAGCAGCAGCAGCAGAAGCGGCGAGTGGTCGACGACGACGACGAATCGGATGTCGATATGCTCAGCATATCCAGCGGCGATGAGGACTCCACCTCGAGAGATCAGCAACGTGTGCGGTTCCGCGGCTCTTCTGGTGCCGCCAGACCTAAAGACGACGAGGCTGCTTGGGACGGCGACGAGCCCGGTTGCTGGAAGCATGTGGACGAGGCCGAGCTTGCTCGCAGGGTTCGTGGAATGCGAGAGACAAGAGCAGCACCGGTGGCCATTAAAGTTGAGCGCAAAGCGTCCACTGCAGGTTTGCCAAGGAAGGGACTAACCAATTTACAGTCCTTCCCTCGTGGCATGGAGTGTATTGATCCCCTAGGCCTCGGCATTATAGACAACAAAACCTTGAGACTCATAACCGAGTCCTCCGACTATTCTCCAACCAAGGATGACAAATTGGATAACAGCCTTCGTGAGAAGTTGTTGTATTTCTCTGAGAAATTTGATGCCAAGGTCTTCATATCCCGGATTCACCAAGAAACAAATGCAGCTGATTTGGAGGCTGGTGCTCTGGCTCTTAAAAGTGATCTTATAGGACGCACTCAGCAGAGAAAACAATTGGTCAAAGACAATTTTGACTGCTTCGTCTCTTGCAAAACCACAATTGATGATATCGAGTCAAAATTAAAACGGATTGAAGATGATCCTGAAGGTTCAGGGACTACTCATTTGTTCAAATGCATGGAAGGAGTCAGTTCATTGGCTAATCGTGCTTTCCAGCATCTATTTGAGAGACAGGCTGAAGCTGAAAAGATTAGGTCAGTCCAGGGAATGCTGCAGAGGTTCCGAACGCTATTCAATTTGCCCAGTACAATTCGTGGTAGCATAAGCAAGGGTGAATATGACTTGGCAGTTAGGGAATACAAGAAGGCGAAGTCGATTGCTCTCCCTTCTCATGTGGGAATACTGAAACGTGTTCTTGAAGAGGTTGAGAAAGTGATGCATGAGTTTAAAGGCACTCTATACAAGTCTATGGAAGATCCACAGATAGATCTAACCAATCTTGAAAACACAGTAAGACTACTGTTGGAGCTGGAGCCTGAGTCGGATCCTGTTTGGCATTATTTAAATATACAGAATAACAGAATTCGAGGTTTGCTTGAGAAGTGCACACTAGATCATGAAGCTAGAATGGAGACTCTACATAATGTTTTACGTGAAAGGGCTTTATTTGATGCAAGATGGAGGCAGATTCAACAAGATACCAATCAATCTTCAGATGCTCTTGCTTTTGGAAACAACAATCTTCTGGTTGATTCTGTGGCAGTCGATTTGACTGGTGAAGAAGTTGATGCTCTTAGAGGGAGGTATATTCGTAGATTAACTGCTGTGCTTACACATCACATACCAGCATTCTGGAAAGTAGCACTTTCTGTTTTCAGCGGAAAATTTGCAAAGTCATCCCAAGTTTCTACGGAATCAAATGCTAATACTCCAGCAAATAAATCTGAGGAAAAAGTTGGAGATGGAAAATACTCTACTCATTCTCTTGATGAAGTTTCCGTAATGATACGCAATACTATAGCAGCATATGAAGTGAAGGTTTGCAATACCTTTCGTGATCTTGAAGAATCAAATATTCTGCAACCATATATGAGTGATGCAATAATTGAAATATCCAAAGCTTGTGAAGCCTTTGAAGTGAAGGAATCAGCTCCATCTATTGCTGTAATTGCAACTCGAGCACTTCAGTCAGAGATTACAAAGATCTATATTTTAAGGCTTTGCTCGTGGATGCGGGCATCAACGGTAGAGATTTCAAAAGATGAGGCATGGGTCCCAGTATCAGTTCTTGAACGGAATAAATCTCCCTATACAATATCTTACTTGCCGCTAGCGTTCCGTAATGTTATGACCTCAGCAATGGATCAGATCAAGTTGATGATTCAGACATTAAGGAGTGAGGCGACCAGGTCAGAGGATATGTTTGCGCAACTCCAAGAAATACAAGAATCTGTCAGACTTGCATTTTTGAATTGTATTTTGGATTTTGCAGGTCATCTGGAGCGTATAGGTAGTGAGCTTACTCAAAACAGATCTAGCAAAGGAAGTTCACATGTAGAAAATGGATATTCACAGAACCTAGAAGAGAAACAAATGTTTGATCTCAGGGGAAGTGTTGTGGGTCCCCATCAACAGTTGTTGATAGTTTTGAGTAATATTGGCTATTGCAAAGAAGAGCTTTCTTATGAGTTGTACAACAACTACAAACATATCTGGCTACAGTCGAGGGAAAGAGAGGAAGAGGATAGTGACATACAAGATTTAGTGATGTCGTTTTCTGGGCTGGAAGAGAAGGTTCTTGAACAGTATACTTTTGCTAAGGCAAATTTGATCAGAACGGCTGCTTCGAACTATTTGTTAGATTCTGGTGTTCAATGGGGAGCAGCACCTGCTGTAAAAGGTGTGCGTGATGCTGCTGTGGAGTTGCTGCACACTTTGGTAGCTGTACATGCAGAGGTTTTTTCTGGTGCTAGGCCTTTTCTGGACAAGACACTCGGCATTCTTGTAGAAGGTCTAATTGATACTTTTATCAGCCTGTTCCACGAAAACAGCATGAAAGAGCTTAGGTCACTTGACACAAATGGTTTCTGCCAGCTAATGCTTGAGGTAAAAGATCATGTTCTATCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0030054 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043230 GO:0043933 GO:0044085 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0055044 GO:0060321 GO:0065003 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

Sec5

Protein Analysis

956

Amino Acids

107.73

Weight (kDa)

5.57

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec5	PF15469	182 - 949	4.9e-132	Exocyst complex component Sec5
Dor1	PF04124	248 - 442	1.1e-07	Dor1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21170 AT1G21170 AT1G76850
fragaria_vesca	FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280
malus_domestica	MD02G1241200.v1.1 MD02G1241400.v1.1 MD07G1075500.v1.1
prunus_persica	Prupe.8G058700_v2.0.a1 Prupe.8G058700_v2.0.a1
pyrus_communis	pycom02g20640 pycom02g20660 pycom02g20670 pycom02g20680 pycom02g20750 pycom02g20760 pycom07g05950
rosa_chinensis	RchiOBHm_Chr1g0332001
rosa_laevigata	RLG00000029699
rosa_multiflora	Rmu_co8474765.1_g000001 Rmu_sc0003358.1_g000014
rosa_roxburghii	Rroxscaffold_4G00318510
rosa_rugosa	Rorug01G0097700
rosa_samantha	Rh1AG121600 Rh1BG093100 Rh1CG116400 Rh1DG127300
rosa_wichuraiana	Rw1G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2635
AasI	GACNNNNNNGTC	1 cut(s)	818
Acc16I	TGCGCA	1 cut(s)	2166
Acc36I	ACCTGC	3 cut(s)	473, 2219, 2635
AccB1I	GGYRCC	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	9
AccI	GTMKAC	2 cut(s)	219, 2546
AccII	CGCG	1 cut(s)	312
AclWI	GGATC	6 cut(s)	539, 872, 1208, 1277, 1290, 2109
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	4 cut(s)	674, 1320, 1622, 2563
AcuI	CTGAAG	5 cut(s)	68, 903, 996, 1434, 1907
AfaI	GTAC	3 cut(s)	1045, 2432, 2685
AfiI	CCNNNNNNNGG	3 cut(s)	40, 378, 497
AflIII	ACRYGT	3 cut(s)	298, 1147, 2290
AgeI	ACCGGT	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	999, 2144
AjuI	GAANNNNNNNTTGG	2 cut(s)	2201, 2233
Alw21I	GWGCWC	4 cut(s)	33, 745, 1346, 1921
Alw26I	GTCTC	6 cut(s)	100, 425, 577, 826, 961, 1364
Alw44I	GTGCAC	1 cut(s)	1342
AlwI	GGATC	6 cut(s)	539, 872, 1208, 1277, 1290, 2109
AlwNI	CAGNNNCTG	1 cut(s)	2627
Ama87I	CYCGRG	2 cut(s)	283, 1914
AoxI	GGCC	4 cut(s)	396, 450, 553, 2711
ApaLI	GTGCAC	1 cut(s)	1342
ApoI	RAATTY	4 cut(s)	674, 1320, 1622, 2563
ArsI	GACNNNNNNTTYG	4 cut(s)	225, 257, 886, 918
AsiGI	ACCGGT	1 cut(s)	445
AspA2I	CCTAGG	1 cut(s)	550
AspLEI	GCGC	2 cut(s)	468, 2167
AspS9I	GGNCC	2 cut(s)	2011, 2360
AsuC2I	CCSGG	3 cut(s)	103, 372, 700
AsuHPI	GGTGA	3 cut(s)	698, 1082, 1526
AsuII	TTCGAA	1 cut(s)	2585
AsuNHI	GCTAGC	1 cut(s)	2068
AvaI	CYCGRG	2 cut(s)	283, 1914
AvaII	GGWCC	2 cut(s)	2011, 2360
AvrII	CCTAGG	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	1346
BalI	TGGCCA	1 cut(s)	452
BamHI	GGATCC	1 cut(s)	1282
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	2 cut(s)	33, 372
BauI	CACGAG	2 cut(s)	525, 1963
BbsI	GAAGAC	1 cut(s)	682
Bbv12I	GWGCWC	4 cut(s)	33, 745, 1346, 1921
BbvCI	CCTCAGC	1 cut(s)	2092
BccI	CCATC	5 cut(s)	34, 1410, 1694, 1900, 2373
BceAI	ACGGC	2 cut(s)	376, 2592
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	2 cut(s)	1001, 2146
BclI	TGATCA	1 cut(s)	2568
BcnI	CCSGG	3 cut(s)	103, 372, 700
BcoDI	GTCTC	6 cut(s)	100, 425, 577, 826, 961, 1364
BfaI	CTAG	7 cut(s)	551, 1349, 1362, 2069, 2274, 2318, 2709
BfmI	CTRYAG	4 cut(s)	480, 1010, 1755, 2456
BfuAI	ACCTGC	3 cut(s)	473, 2219, 2635
BglII	AGATCT	3 cut(s)	1225, 1941, 2270
BlnI	CCTAGG	1 cut(s)	550
BlpI	GCTNAGC	1 cut(s)	251
Bme1390I	CCNGG	5 cut(s)	103, 372, 700, 1001, 2146
Bme18I	GGWCC	2 cut(s)	2011, 2360
BmeT110I	CYCGRG	2 cut(s)	283, 1914
BmgT120I	GGNCC	2 cut(s)	2011, 2360
BmiI	GGNNCC	9 cut(s)	308, 325, 1019, 1272, 1284, 2012, 2013, 2361, 2362
BmrFI	CCNGG	5 cut(s)	103, 372, 700, 1001, 2146
BmrI	ACTGGG	2 cut(s)	1035, 2009
BmtI	GCTAGC	1 cut(s)	2072
BmuI	ACTGGG	2 cut(s)	1035, 2009
BpiI	GAAGAC	1 cut(s)	682
BpmI	CTGGAG	4 cut(s)	20, 1289, 1653, 2258
Bpu10I	CCTNAGC	3 cut(s)	2092, 2556, 2801
Bpu1102I	GCTNAGC	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	2585
BpuEI	CTTGAG	3 cut(s)	601, 1355, 2861
BpuMI	CCSGG	3 cut(s)	103, 372, 700
BsaAI	YACGTR	1 cut(s)	1391
BsaBI	GATNNNNATC	1 cut(s)	1440
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	7 cut(s)	310, 491, 550, 556, 618, 684, 1000
BsaWI	WCCGGW	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	1262, 1292
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 378, 497
Bse118I	RCCGGY	1 cut(s)	445
Bse1I	ACTGG	3 cut(s)	1041, 1516, 2015
Bse3DI	GCAATG	1 cut(s)	2103
Bse8I	GATNNNNATC	1 cut(s)	1440
BseBI	CCWGG	2 cut(s)	1001, 2146
BseDI	CCNNGG	7 cut(s)	310, 491, 550, 556, 618, 684, 1000
BseGI	GGATG	5 cut(s)	31, 244, 628, 1634, 1974
BseJI	GATNNNNATC	1 cut(s)	1440
BseLI	CCNNNNNNNGG	3 cut(s)	40, 378, 497
BseMI	GCAATG	1 cut(s)	2103
BseMII	CTCAG	8 cut(s)	74, 265, 660, 791, 1266, 1674, 2106, 2356
BseNI	ACTGG	3 cut(s)	1041, 1516, 2015
BseRI	GAGGAG	4 cut(s)	23, 126, 129, 132
BseSI	GKGCMC	1 cut(s)	1346
BsgI	GTGCAG	1 cut(s)	2651
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	4 cut(s)	398, 452, 555, 2713
BshNI	GGYRCC	1 cut(s)	323
BshTI	ACCGGT	1 cut(s)	445
BsiHKAI	GWGCWC	4 cut(s)	33, 745, 1346, 1921
BsiHKCI	CYCGRG	2 cut(s)	283, 1914
BsiSI	CCGG	5 cut(s)	103, 146, 372, 446, 700
BslFI	GGGAC	5 cut(s)	371, 513, 907, 1997, 2346
BslI	CCNNNNNNNGG	3 cut(s)	40, 378, 497
BsmAI	GTCTC	6 cut(s)	100, 425, 577, 826, 961, 1364
BsmBI	CGTCTC	1 cut(s)	826
BsmFI	GGGAC	5 cut(s)	371, 513, 907, 1997, 2346
BsmI	GAATGC	4 cut(s)	429, 1011, 1586, 2736
BsnI	GGCC	4 cut(s)	398, 452, 555, 2713
Bso31I	GGTCTC	1 cut(s)	100
BsoBI	CYCGRG	2 cut(s)	283, 1914
Bsp119I	TTCGAA	1 cut(s)	2585
Bsp1286I	GDGCHC	5 cut(s)	33, 372, 745, 1346, 1921
Bsp1407I	TGTACA	2 cut(s)	2430, 2683
Bsp1720I	GCTNAGC	1 cut(s)	251
BspANI	GGCC	4 cut(s)	398, 452, 555, 2713
BspCNI	CTCAG	8 cut(s)	73, 264, 661, 790, 1267, 1675, 2105, 2355
BspFNI	CGCG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	1354
BspLI	GGNNCC	9 cut(s)	308, 325, 1019, 1272, 1284, 2012, 2013, 2361, 2362
BspMAI	CTGCAG	2 cut(s)	484, 1014
BspMI	ACCTGC	3 cut(s)	473, 2219, 2635
BspOI	GCTAGC	1 cut(s)	2072
BspPI	GGATC	6 cut(s)	539, 872, 1208, 1277, 1290, 2109
BspQI	GCTCTTC	2 cut(s)	322, 2406
BspT104I	TTCGAA	1 cut(s)	2585
BspT107I	GGYRCC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	100
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	2103
BsrFI	RCCGGY	1 cut(s)	445
BsrGI	TGTACA	2 cut(s)	2430, 2683
BsrI	ACTGG	3 cut(s)	1041, 1516, 2015
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	7 cut(s)	310, 491, 550, 556, 618, 684, 1000
BssNAI	GTATAC	1 cut(s)	2547
BssSI	CACGAG	2 cut(s)	525, 1963
BssT1I	CCWWGG	4 cut(s)	491, 550, 618, 684
Bst1107I	GTATAC	1 cut(s)	2547
Bst2BI	CACGAG	2 cut(s)	525, 1963
Bst2UI	CCWGG	2 cut(s)	1001, 2146
Bst4CI	ACNGT	8 cut(s)	90, 516, 1249, 1260, 1984, 2373, 2460, 2544
Bst6I	CTCTTC	6 cut(s)	322, 1152, 2316, 2406, 2472, 2520
BstAPI	GCANNNNNTGC	2 cut(s)	301, 2627
BstAUI	TGTACA	2 cut(s)	2430, 2683
BstBAI	YACGTR	1 cut(s)	1391
BstBI	TTCGAA	1 cut(s)	2585
BstC8I	GCNNGC	5 cut(s)	405, 409, 1974, 2070, 2831
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	5 cut(s)	31, 244, 628, 1634, 1974
BstFNI	CGCG	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	468, 2167
BstMAI	GTCTC	6 cut(s)	100, 425, 577, 826, 961, 1364
BstNI	CCWGG	2 cut(s)	1001, 2146
BstNSI	RCATGY	3 cut(s)	389, 2294, 2690
BstSCI	CCNGG	5 cut(s)	101, 370, 698, 999, 2144
BstSFI	CTRYAG	4 cut(s)	480, 1010, 1755, 2456
BstSLI	GKGCMC	1 cut(s)	1346
BstUI	CGCG	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	682
BstX2I	RGATCY	5 cut(s)	1213, 1225, 1282, 1941, 2270
BstXI	CCANNNNNNTGG	1 cut(s)	1590
BstYI	RGATCY	5 cut(s)	1213, 1225, 1282, 1941, 2270
BstZ17I	GTATAC	1 cut(s)	2547
BsuRI	GGCC	4 cut(s)	398, 452, 555, 2713
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	5 cut(s)	31, 244, 628, 1634, 1974
BtsI	GCAGTG	2 cut(s)	19, 477
BtsIMutI	CAGTG	2 cut(s)	19, 477
BveI	ACCTGC	3 cut(s)	473, 2219, 2635
Cac8I	GCNNGC	5 cut(s)	405, 409, 1974, 2070, 2831
CaiI	CAGNNNCTG	1 cut(s)	2627
CciI	TCATGA	1 cut(s)	1354
CfoI	GCGC	2 cut(s)	468, 2167
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	2 cut(s)	2011, 2360
Cfr42I	CCGCGG	1 cut(s)	313
CseI	GACGC	2 cut(s)	462, 780
CsiI	ACCWGGT	1 cut(s)	2144
Csp6I	GTAC	3 cut(s)	1044, 2431, 2684
CspAI	ACCGGT	1 cut(s)	445
CviQI	GTAC	3 cut(s)	1044, 2431, 2684
DraI	TTTAAA	2 cut(s)	1186, 1302
DrdI	GACNNNNNNGTC	1 cut(s)	818
DseDI	GACNNNNNNGTC	1 cut(s)	818
EaeI	YGGCCR	1 cut(s)	450
Eam1104I	CTCTTC	6 cut(s)	322, 1152, 2316, 2406, 2472, 2520
EarI	CTCTTC	6 cut(s)	322, 1152, 2316, 2406, 2472, 2520
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	4 cut(s)	491, 550, 618, 684
Eco147I	AGGCCT	2 cut(s)	555, 2713
Eco24I	GRGCYC	2 cut(s)	33, 372
Eco31I	GGTCTC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	2 cut(s)	2011, 2360
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	5 cut(s)	68, 903, 996, 1434, 1907
Eco88I	CYCGRG	2 cut(s)	283, 1914
EcoICRI	GAGCTC	1 cut(s)	31
EcoO109I	RGGNCCY	2 cut(s)	2011, 2360
EcoRI	GAATTC	1 cut(s)	1320
EcoRII	CCWGG	2 cut(s)	999, 2144
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	4 cut(s)	491, 550, 618, 684
EcoT22I	ATGCAT	2 cut(s)	917, 1179
EcoT38I	GRGCYC	2 cut(s)	33, 372
ErhI	CCWWGG	4 cut(s)	491, 550, 618, 684
Esp3I	CGTCTC	1 cut(s)	826
FalI	AAGNNNNNCTT	4 cut(s)	1587, 1619, 2400, 2432
FaqI	GGGAC	5 cut(s)	371, 513, 907, 1997, 2346
FauI	CCCGC	1 cut(s)	1965
FauNDI	CATATG	1 cut(s)	1765
FbaI	TGATCA	1 cut(s)	2568
FblI	GTMKAC	2 cut(s)	219, 2546
FokI	GGATG	5 cut(s)	38, 251, 635, 1621, 1981
FriOI	GRGCYC	2 cut(s)	33, 372
FspBI	CTAG	7 cut(s)	551, 1349, 1362, 2069, 2274, 2318, 2709
FspI	TGCGCA	1 cut(s)	2166
GlaI	GCGC	2 cut(s)	467, 2166
GsuI	CTGGAG	4 cut(s)	20, 1289, 1653, 2258
HaeIII	GGCC	4 cut(s)	398, 452, 555, 2713
HapII	CCGG	5 cut(s)	103, 146, 372, 446, 700
HgaI	GACGC	2 cut(s)	462, 780
HhaI	GCGC	2 cut(s)	468, 2167
Hin6I	GCGC	2 cut(s)	466, 2165
HinP1I	GCGC	2 cut(s)	466, 2165
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	1857
HpaII	CCGG	5 cut(s)	103, 146, 372, 446, 700
HphI	GGTGA	3 cut(s)	698, 1082, 1526
Hpy166II	GTNNAC	6 cut(s)	220, 391, 477, 1344, 2288, 2547
Hpy8I	GTNNAC	6 cut(s)	220, 391, 477, 1344, 2288, 2547
Hpy99I	CGWCG	6 cut(s)	224, 227, 230, 233, 347, 368
HpyCH4III	ACNGT	8 cut(s)	90, 516, 1249, 1260, 1984, 2373, 2460, 2544
HpyCH4IV	ACGT	4 cut(s)	123, 298, 1147, 1390
HpySE526I	ACGT	4 cut(s)	123, 298, 1147, 1390
HspAI	GCGC	2 cut(s)	466, 2165
KflI	GGGWCCC	2 cut(s)	2011, 2360
Ksp22I	TGATCA	1 cut(s)	2568
KspI	CCGCGG	1 cut(s)	313
LguI	GCTCTTC	2 cut(s)	322, 2406
LmnI	GCTCC	7 cut(s)	36, 52, 1264, 1270, 1894, 2239, 2618
MabI	ACCWGGT	1 cut(s)	2144
MaeI	CTAG	7 cut(s)	551, 1349, 1362, 2069, 2274, 2318, 2709
MaeII	ACGT	4 cut(s)	123, 298, 1147, 1390
MaeIII	GTNAC	2 cut(s)	2486, 2805
MbiI	CCGCTC	1 cut(s)	9
MfeI	CAATTG	2 cut(s)	791, 837
MflI	RGATCY	5 cut(s)	1213, 1225, 1282, 1941, 2270
MhlI	GDGCHC	5 cut(s)	33, 372, 745, 1346, 1921
MlsI	TGGCCA	1 cut(s)	452
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	7 cut(s)	269, 579, 605, 860, 933, 1286, 1366
MmeI	TCCRAC	5 cut(s)	627, 638, 1242, 1260, 1675
Mox20I	TGGCCA	1 cut(s)	452
Mph1103I	ATGCAT	2 cut(s)	917, 1179
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	8 cut(s)	456, 753, 860, 1185, 1301, 1556, 1952, 2129
Msp20I	TGGCCA	1 cut(s)	452
MspA1I	CMGCKG	4 cut(s)	264, 312, 725, 1617
MspI	CCGG	5 cut(s)	103, 146, 372, 446, 700
MspR9I	CCNGG	5 cut(s)	103, 372, 700, 1001, 2146
MunI	CAATTG	2 cut(s)	791, 837
Mva1269I	GAATGC	4 cut(s)	429, 1011, 1586, 2736
MvaI	CCWGG	2 cut(s)	1001, 2146
MvnI	CGCG	1 cut(s)	312
NciI	CCSGG	3 cut(s)	103, 372, 700
NdeI	CATATG	1 cut(s)	1765
NheI	GCTAGC	1 cut(s)	2068
NlaIV	GGNNCC	9 cut(s)	308, 325, 1019, 1272, 1284, 2012, 2013, 2361, 2362
NmeAIII	GCCGAG	3 cut(s)	424, 537, 2712
NmuCI	GTSAC	2 cut(s)	2486, 2805
NsbI	TGCGCA	1 cut(s)	2166
NsiI	ATGCAT	2 cut(s)	917, 1179
NspI	RCATGY	3 cut(s)	389, 2294, 2690
NspV	TTCGAA	1 cut(s)	2585
PaeR7I	CTCGAG	2 cut(s)	283, 1914
PagI	TCATGA	1 cut(s)	1354
PaqCI	CACCTGC	1 cut(s)	2635
PceI	AGGCCT	2 cut(s)	555, 2713
PciI	ACATGT	1 cut(s)	2290
PciSI	GCTCTTC	2 cut(s)	322, 2406
PcsI	WCGNNNNNNNCGW	5 cut(s)	225, 228, 415, 424, 2582
PctI	GAATGC	4 cut(s)	429, 1011, 1586, 2736
PflFI	GACNNNGTC	1 cut(s)	2146
PfoI	TCCNGGA	2 cut(s)	101, 698
PinAI	ACCGGT	1 cut(s)	445
PleI	GAGTC	7 cut(s)	269, 579, 604, 859, 932, 1285, 1366
PpsI	GAGTC	7 cut(s)	269, 579, 604, 859, 932, 1285, 1366
Ppu21I	YACGTR	1 cut(s)	1391
PpuMI	RGGWCCY	2 cut(s)	2011, 2360
PscI	ACATGT	1 cut(s)	2290
Psp124BI	GAGCTC	1 cut(s)	33
Psp5II	RGGWCCY	2 cut(s)	2011, 2360
Psp6I	CCWGG	2 cut(s)	999, 2144
PspGI	CCWGG	2 cut(s)	999, 2144
PspN4I	GGNNCC	9 cut(s)	308, 325, 1019, 1272, 1284, 2012, 2013, 2361, 2362
PspPI	GGNCC	2 cut(s)	2011, 2360
PspPPI	RGGWCCY	2 cut(s)	2011, 2360
PspXI	VCTCGAGB	1 cut(s)	1914
PstI	CTGCAG	2 cut(s)	484, 1014
PstNI	CAGNNNCTG	1 cut(s)	2627
PsuI	RGATCY	5 cut(s)	1213, 1225, 1282, 1941, 2270
PsyI	GACNNNGTC	1 cut(s)	2146
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	3 cut(s)	1045, 2432, 2685
RsaNI	GTAC	3 cut(s)	1044, 2431, 2684
SacI	GAGCTC	1 cut(s)	33
SacII	CCGCGG	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	218
SapI	GCTCTTC	2 cut(s)	322, 2406
SaqAI	TTAA	8 cut(s)	456, 753, 860, 1185, 1301, 1556, 1952, 2129
Sau96I	GGNCC	2 cut(s)	2011, 2360
SchI	GAGTC	7 cut(s)	269, 579, 605, 860, 933, 1286, 1366
ScrFI	CCNGG	5 cut(s)	103, 372, 700, 1001, 2146
SduI	GDGCHC	5 cut(s)	33, 372, 745, 1346, 1921
SexAI	ACCWGGT	1 cut(s)	2144
SfcI	CTRYAG	4 cut(s)	480, 1010, 1755, 2456
Sfr274I	CTCGAG	2 cut(s)	283, 1914
Sfr303I	CCGCGG	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	2585
SgrAI	CRCCGGYG	1 cut(s)	445
SgrBI	CCGCGG	1 cut(s)	313
SinI	GGWCC	2 cut(s)	2011, 2360
SlaI	CTCGAG	2 cut(s)	283, 1914
SmiI	ATTTAAAT	1 cut(s)	1302
SmlI	CTYRAG	5 cut(s)	283, 580, 1334, 1914, 2840
SmoI	CTYRAG	5 cut(s)	283, 580, 1334, 1914, 2840
SseBI	AGGCCT	2 cut(s)	555, 2713
SspI	AATATT	2 cut(s)	1813, 2395
SspMI	CTAG	7 cut(s)	551, 1349, 1362, 2069, 2274, 2318, 2709
SstI	GAGCTC	1 cut(s)	33
StuI	AGGCCT	2 cut(s)	555, 2713
StyD4I	CCNGG	5 cut(s)	101, 370, 698, 999, 2144
StyI	CCWWGG	4 cut(s)	491, 550, 618, 684
SwaI	ATTTAAAT	1 cut(s)	1302
TaaI	ACNGT	8 cut(s)	90, 516, 1249, 1260, 1984, 2373, 2460, 2544
TaiI	ACGT	4 cut(s)	126, 301, 1150, 1393
TatI	WGTACW	3 cut(s)	1043, 2430, 2683
TauI	GCSGC	9 cut(s)	12, 184, 187, 190, 211, 267, 315, 329, 2068
Tru1I	TTAA	8 cut(s)	456, 753, 860, 1185, 1301, 1556, 1952, 2129
Tru9I	TTAA	8 cut(s)	456, 753, 860, 1185, 1301, 1556, 1952, 2129
TscAI	CASTG	2 cut(s)	19, 484
TseFI	GTSAC	2 cut(s)	2486, 2805
Tsp45I	GTSAC	2 cut(s)	2486, 2805
TspDTI	ATGAA	6 cut(s)	682, 921, 1371, 1743, 1782, 2807
TspGWI	ACGGA	5 cut(s)	880, 1664, 1726, 2047, 2066
TspRI	CASTG	2 cut(s)	19, 484
Tth111I	GACNNNGTC	1 cut(s)	2146
VneI	GTGCAC	1 cut(s)	1342
VpaK11BI	GGWCC	2 cut(s)	2011, 2360
XapI	RAATTY	4 cut(s)	674, 1320, 1622, 2563
XceI	RCATGY	3 cut(s)	389, 2294, 2690
XhoI	CTCGAG	2 cut(s)	283, 1914
XmaJI	CCTAGG	1 cut(s)	550
XmiI	GTMKAC	2 cut(s)	219, 2546
XspI	CTAG	7 cut(s)	551, 1349, 1362, 2069, 2274, 2318, 2709
Zsp2I	ATGCAT	2 cut(s)	917, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.