Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003765

Physical Location & Seq

Genomic Coordinates Reverse (-)

23089106 .. 23107141

Gene Structure 18036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56095

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3288 bp

ATGTCGAGCGGCAGTGAGGACGAGGATGAGCTCCTCCAGATGGCTCTGAAGGAGCAATCTCAGAGAGATGTGAATTATCAGAAGCCACCGTCAAGCAACTCCCGGAGACCCGTTGCCAATTACGTCCAAGCCCCTCCTCCTCCTCCGGCAGCAGCCAAGAAGTCCAATGGCAACAAGAAGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGAAGCGGCGAGTGGTCGACGACGACGACGAATCGGATGTCGATATGCTCAGCATATCCAGCGGCGATGAGGACTCCACCTCGAGAGATCAGCAACGTGTGCGGTTCCGCGGCTCTTCTGGTGCCGCCAGACCTAAAGACGACGAGGCTGCTTGGGACGGCGACGAGCCTGGTTGCTGGAAGCATGTGGACGAGGCCGAGCTTGCTCGCAGGGTTCGTGGAATGCGAGAGACAAGAGCAGCACCGGTGGCCATTAAAGTTGAGCGTAAAGCGTCCACTGCAGGTTTGCCAAGGAAGGGACTAACCAATTTGCAGTCCTTCCCTCGTGGCATGGAGTGTATTGATCCCCTAGGCCTCGGCATTATAGACAACAAAACCTTGAGACTCATAACCGAGTCCTCCGACTATTCTCCAACCAAGGATGACAAGTTGGACAACACCCTTCGTGAGAAGTTGTTGTATTTCTCTGAGAAATTTGATGCCAAGGTCTTCATATCCCGGATTCACCAAGAAACAAATGCAGCTGATTTGGAGGCTGGTGCTCTGGCTCTTAAAAGTGATCTTATAGGACGCACTCAGCAGAGAAAACAATTGGTCAAAGACAATTTTGACTGCTTCGTCTCTTGCAAAACCACAATTGATGATATCGAGTCAAAATTAAAACGGATTGAAGATGATCCTGAAGGTTCAGGGACTACTCATTTGTTCAAATGCATGGAAGGAGTCAGTTCATTGGCTAATCGTGCTTTCCAGCATCTATTTGAGAGACAGGCTGAAGCTGAAAAGATTAGGTCAGTCCAGGGAATGCTGCAGAGGTTCCGAACGCTATTCAATTTGCCCAGTACAATTCGTGGTAGCATAAGCAAGGGTGAATATGACTTGGCAGTTAGGGAATACAAGAAGGCGAAGTCGATTGCTCTCCCTTCTCATGTGGGAATACTGAAACGTGTTCTTGAAGAGGTTGAGAAAGTGATGCATGAGTTTAAAGGCACTCTATACAAGTCTATGGAAGATCCACAGATAGATCTAACCAATCTTGAAAACACAGTAAGACTACTGTTGGAGCTGGAGCCTGAGTCGGATCCTGTTTGGCATTATTTAAATATACAGAATAACAGAATTCGAGGTTTGCTAGAGAAGTGCACACTAGATCATGAAGCTAGAATGGAGACTCTACATAATGTTTTACGTGAAAGGGCTTTATTTGATGCAAGATGGAGGCAGATTCAACAAGATACCAATCAATCTTCAGATGCTCTTGCTTTTGGAAACAACAATCTTCTGGTTGATTCTGTGGCAGTCGATTTGACTGGTGAAGAAGTTGATGCTCTTAGAGGGAGGTATATTCGTAGATTAACTGCTGTTCTTACACATCACATACCAGCATTCTGGAAAGTAGCACTTTCTGTTTTCAGCGGAAAATTTGCAAAGTCATCCCAAGTTTCTACGGAATCAAATGCTAATACTCCAGCAAATAAATCTGAGGAAAAAGTTGGAGATGGGAAATACTCTACTCATTCTCTTGATGAAGTTTCCGTAATGATACGCAATACTATAGCAGCATATGAAGTGAAGGTTTGCAATACCTTTCGTGATCTTGAAGAATCAAATATTCTGCAACCATATATGAGTGATGCAATAATTGAAATATCCAAAGCTTGTGAAGCCTTTGAAGTGAAGGAATCAGCTCCATCTATTGCTGTAATTGCAACTCGAGCACTTCAGTCAGAGATTACAAAGATCTATATTTTAAGGCTTTGCTCGTGGATGCGGGCATCAACGGTAGAGATTTCAAAAGATGAGGCATGGGTCCCAGTATCAGTTCTTGAACGGAATAAATCTCCCTATACAATATCTTACTTGCCGCTAGCGTTCCGTAATGTTATGACCTCAGCAATGGATCAGATCAAGTTGATGATTCAGACATTAAGGAGTGAGGCGACCAGGTCAGAGGATATGTTTGCGCAACTCCAAGAAATACAAGAATCTGTCAGACTTGCATTTTTGAATTGTATTTTGGATTTTGCAGGTCATCTGGAGCGTATAGGTAGTGAGCTTACTCAAAACAGATCTAGCAAAGGAAGTTCACATGTAGAAAATGGATATTCACAGAACCTAGAAGAGAAGCAAATGTTTGATCTCAGGGGAAGTGTTGTGGGTCCCCATCAACAGTTGTTGATAGTTTTGAGTAATATTGGCTATTGCAAAGAAGAGCTTTCTTATGAGTTGTACAACAACTACAAACATATCTGGCTACAGTCGAGGGAAAGAGAGGAAGAGGATAGTGACATACAAGATTTAGTGATGTCTTTTTCTGGGCTGGAAGAGAAGGTTCTTGAACAGTATACTTTTGCTAAGGCAAATTTGATCAGAACGGCTGCTTCGAACTATTTGTTAGATTCTGGTGTTCAATGGGGAGCAGCACCTGCTGTAAAAGGTGTGCGTGATGCTGCTGTGGAGTTGCTGCACACTTTGGTAGCTGTACATGCAGAGGTTTTTTCTGGTGCTAAGCCTTTTCTGGACAAGACACTCGGCATTCTTGTAGAAGGTCTAATTGATACTTTTATCAGCCTGTTCCACGAAAACAGCATGAAAGAGCTTAGGTCACTTGACACAAATGGTTTCTGCCAGCTAATGCTTGAGCTTGAATATTTCGAGACCATTTTAAATCCATATTTTACACCTGATGCAAGAGAGGCTCTGAAGTCTTTACAAGGGGTGCTTCTGAATAAAGCAACTGAAAGTGTGACTGAAAATGTGGAGAATCCAGGACACAACCGGCGAGCAACACGTGGAAGTGAAGATGCAGTGCCAGATGATAAACTGCCAGGGATGACTGTGTCTCCAGATGATCTGATTGCTCATGCCCAGCAATATAGCTCTGAGTTACTTCAAGCAGAGCTTGAGAGGACTCACATCAATACAGCATGCTTTGTTGAGTCAATTCCTTTGGACTCAGCACCAGAATCAGCCAAACGTGCTTATGCTTCCTTTAGGGGGTCACTGGATTCTCCCAGTAGAAACTATAGAGGCACACAAGGAACAGCATCTCCAAGCTACTCCAGGAATAGGCGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000145 GO:0001927 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0008037 GO:0008150 GO:0009506 GO:0009856 GO:0009875 GO:0009987 GO:0016020 GO:0016043 GO:0016192 GO:0022406 GO:0022414 GO:0022607 GO:0030054 GO:0031982 GO:0032501 GO:0032940 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043230 GO:0043933 GO:0044085 GO:0044421 GO:0044424 GO:0044444 GO:0044448 GO:0044464 GO:0044706 GO:0046903 GO:0048278 GO:0048544 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051704 GO:0055044 GO:0060321 GO:0065003 GO:0070062 GO:0071840 GO:0071944 GO:0099023 GO:0099568 GO:0140029 GO:0140056 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

Sec5

Protein Analysis

1095

Amino Acids

123.18

Weight (kDa)

5.55

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec5	PF15469	184 - 1047	3e-143	Exocyst complex component Sec5
Dor1	PF04124	250 - 430	1.4e-07	Dor1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0003765)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21170 AT1G21170 AT1G76850
fragaria_vesca	FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280 FvH4_7g05280
malus_domestica	MD02G1241200.v1.1 MD02G1241400.v1.1 MD07G1075500.v1.1
prunus_persica	Prupe.8G058700_v2.0.a1 Prupe.8G058700_v2.0.a1
pyrus_communis	pycom02g20640 pycom02g20660 pycom02g20670 pycom02g20680 pycom02g20750 pycom02g20760 pycom07g05950
rosa_chinensis	RchiOBHm_Chr1g0332001
rosa_laevigata	RLG00000029699
rosa_multiflora	Rmu_co8474765.1_g000001 Rmu_sc0003358.1_g000014
rosa_roxburghii	Rroxscaffold_4G00318510
rosa_rugosa	Rorug01G0097700
rosa_samantha	Rh1AG121600 Rh1BG093100 Rh1CG116400 Rh1DG127300
rosa_wichuraiana	Rw1G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2641
AasI	GACNNNNNNGTC	1 cut(s)	824
Acc16I	TGCGCA	1 cut(s)	2172
Acc36I	ACCTGC	3 cut(s)	479, 2225, 2641
AccB1I	GGYRCC	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	9
AccI	GTMKAC	2 cut(s)	225, 2552
AccII	CGCG	1 cut(s)	318
AclWI	GGATC	6 cut(s)	545, 878, 1214, 1283, 1296, 2115
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	4 cut(s)	680, 1326, 1628, 2569
AcuI	CTGAAG	6 cut(s)	68, 909, 1002, 1440, 1913, 2930
AcvI	CACGTG	1 cut(s)	2999
AcyI	GRCGYC	1 cut(s)	3280
AfaI	GTAC	3 cut(s)	1051, 2438, 2691
AfiI	CCNNNNNNNGG	4 cut(s)	40, 503, 3204, 3276
AflIII	ACRYGT	4 cut(s)	304, 1153, 2296, 2996
AgeI	ACCGGT	1 cut(s)	451
AjnI	CCWGG	6 cut(s)	376, 1005, 2150, 2974, 3034, 3269
AjuI	GAANNNNNNNTTGG	2 cut(s)	2207, 2239
AloI	GAACNNNNNNTCC	2 cut(s)	3241, 3273
Alw21I	GWGCWC	4 cut(s)	33, 751, 1352, 1927
Alw26I	GTCTC	8 cut(s)	100, 431, 583, 832, 967, 1370, 2858, 3054
Alw44I	GTGCAC	1 cut(s)	1348
AlwI	GGATC	6 cut(s)	545, 878, 1214, 1283, 1296, 2115
AlwNI	CAGNNNCTG	1 cut(s)	2633
Ama87I	CYCGRG	2 cut(s)	289, 1920
AoxI	GGCC	3 cut(s)	402, 456, 559
ApaLI	GTGCAC	1 cut(s)	1348
ApoI	RAATTY	4 cut(s)	680, 1326, 1628, 2569
ArsI	GACNNNNNNTTYG	4 cut(s)	231, 263, 892, 924
AsiGI	ACCGGT	1 cut(s)	451
AspA2I	CCTAGG	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	2173
AspS9I	GGNCC	2 cut(s)	2017, 2366
AsuC2I	CCSGG	2 cut(s)	103, 706
AsuHPI	GGTGA	3 cut(s)	704, 1088, 1532
AsuII	TTCGAA	1 cut(s)	2591
AsuNHI	GCTAGC	1 cut(s)	2074
AvaI	CYCGRG	2 cut(s)	289, 1920
AvaII	GGWCC	2 cut(s)	2017, 2366
AvrII	CCTAGG	1 cut(s)	556
BaeGI	GKGCMC	1 cut(s)	1352
BalI	TGGCCA	1 cut(s)	458
BamHI	GGATCC	1 cut(s)	1288
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	33
BauI	CACGAG	2 cut(s)	531, 1969
BbrPI	CACGTG	1 cut(s)	2999
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	4 cut(s)	33, 751, 1352, 1927
BbvCI	CCTCAGC	1 cut(s)	2098
BccI	CCATC	5 cut(s)	34, 1416, 1700, 1906, 2379
BceAI	ACGGC	2 cut(s)	382, 2598
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	6 cut(s)	378, 1007, 2152, 2976, 3036, 3271
BclI	TGATCA	1 cut(s)	2574
BcnI	CCSGG	2 cut(s)	103, 706
BcoDI	GTCTC	8 cut(s)	100, 431, 583, 832, 967, 1370, 2858, 3054
BfaI	CTAG	7 cut(s)	557, 1340, 1355, 1368, 2075, 2280, 2324
BfmI	CTRYAG	5 cut(s)	486, 1016, 1761, 2462, 3232
BfuAI	ACCTGC	3 cut(s)	479, 2225, 2641
BglII	AGATCT	3 cut(s)	1231, 1947, 2276
BlnI	CCTAGG	1 cut(s)	556
BlpI	GCTNAGC	2 cut(s)	257, 2715
Bme1390I	CCNGG	8 cut(s)	103, 378, 706, 1007, 2152, 2976, 3036, 3271
Bme18I	GGWCC	2 cut(s)	2017, 2366
BmeT110I	CYCGRG	2 cut(s)	289, 1920
BmgT120I	GGNCC	2 cut(s)	2017, 2366
BmiI	GGNNCC	9 cut(s)	314, 331, 1025, 1278, 1290, 2018, 2019, 2367, 2368
BmrFI	CCNGG	8 cut(s)	103, 378, 706, 1007, 2152, 2976, 3036, 3271
BmrI	ACTGGG	3 cut(s)	1041, 2015, 3216
BmtI	GCTAGC	1 cut(s)	2078
BmuI	ACTGGG	3 cut(s)	1041, 2015, 3216
BpiI	GAAGAC	1 cut(s)	688
BpmI	CTGGAG	6 cut(s)	20, 1295, 1659, 2264, 3036, 3253
Bpu10I	CCTNAGC	3 cut(s)	2098, 2562, 2807
Bpu1102I	GCTNAGC	2 cut(s)	257, 2715
Bpu14I	TTCGAA	1 cut(s)	2591
BpuEI	CTTGAG	3 cut(s)	607, 2867, 3131
BpuMI	CCSGG	2 cut(s)	103, 706
BsaAI	YACGTR	2 cut(s)	1397, 2999
BsaBI	GATNNNNATC	1 cut(s)	1446
BsaHI	GRCGYC	1 cut(s)	3280
BsaI	GGTCTC	2 cut(s)	100, 2858
BsaJI	CCNNGG	8 cut(s)	316, 497, 556, 562, 624, 690, 1006, 3035
BsaWI	WCCGGW	1 cut(s)	451
BsaXI	ACNNNNNCTCC	6 cut(s)	1268, 1298, 3034, 3064, 3241, 3271
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 503, 3204, 3276
Bse118I	RCCGGY	2 cut(s)	451, 2985
Bse1I	ACTGG	5 cut(s)	1047, 1522, 2021, 3216, 3222
Bse3DI	GCAATG	1 cut(s)	2109
Bse8I	GATNNNNATC	1 cut(s)	1446
BseBI	CCWGG	6 cut(s)	378, 1007, 2152, 2976, 3036, 3271
BseDI	CCNNGG	8 cut(s)	316, 497, 556, 562, 624, 690, 1006, 3035
BseGI	GGATG	6 cut(s)	31, 250, 634, 1640, 1980, 3045
BseJI	GATNNNNATC	1 cut(s)	1446
BseLI	CCNNNNNNNGG	4 cut(s)	40, 503, 3204, 3276
BseMI	GCAATG	1 cut(s)	2109
BseNI	ACTGG	5 cut(s)	1047, 1522, 2021, 3216, 3222
BseRI	GAGGAG	4 cut(s)	23, 126, 129, 132
BseSI	GKGCMC	1 cut(s)	1352
BseYI	CCCAGC	1 cut(s)	3075
BsgI	GTGCAG	1 cut(s)	2657
Bsh1236I	CGCG	1 cut(s)	318
BshFI	GGCC	3 cut(s)	404, 458, 561
BshNI	GGYRCC	1 cut(s)	329
BshTI	ACCGGT	1 cut(s)	451
BsiHKAI	GWGCWC	4 cut(s)	33, 751, 1352, 1927
BsiHKCI	CYCGRG	2 cut(s)	289, 1920
BsiSI	CCGG	5 cut(s)	103, 146, 452, 706, 2986
BslFI	GGGAC	5 cut(s)	377, 519, 913, 2003, 2352
BslI	CCNNNNNNNGG	4 cut(s)	40, 503, 3204, 3276
BsmAI	GTCTC	8 cut(s)	100, 431, 583, 832, 967, 1370, 2858, 3054
BsmBI	CGTCTC	1 cut(s)	832
BsmFI	GGGAC	5 cut(s)	377, 519, 913, 2003, 2352
BsmI	GAATGC	4 cut(s)	435, 1017, 1592, 2742
BsnI	GGCC	3 cut(s)	404, 458, 561
Bso31I	GGTCTC	2 cut(s)	100, 2858
BsoBI	CYCGRG	2 cut(s)	289, 1920
Bsp119I	TTCGAA	1 cut(s)	2591
Bsp1286I	GDGCHC	4 cut(s)	33, 751, 1352, 1927
Bsp1407I	TGTACA	2 cut(s)	2436, 2689
Bsp1720I	GCTNAGC	2 cut(s)	257, 2715
BspANI	GGCC	3 cut(s)	404, 458, 561
BspFNI	CGCG	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	1360
BspLI	GGNNCC	9 cut(s)	314, 331, 1025, 1278, 1290, 2018, 2019, 2367, 2368
BspMAI	CTGCAG	2 cut(s)	490, 1020
BspMI	ACCTGC	3 cut(s)	479, 2225, 2641
BspOI	GCTAGC	1 cut(s)	2078
BspPI	GGATC	6 cut(s)	545, 878, 1214, 1283, 1296, 2115
BspQI	GCTCTTC	2 cut(s)	328, 2412
BspT104I	TTCGAA	1 cut(s)	2591
BspT107I	GGYRCC	1 cut(s)	329
BspTNI	GGTCTC	2 cut(s)	100, 2858
BsrBI	CCGCTC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	2109
BsrFI	RCCGGY	2 cut(s)	451, 2985
BsrGI	TGTACA	2 cut(s)	2436, 2689
BsrI	ACTGG	5 cut(s)	1047, 1522, 2021, 3216, 3222
BssAI	RCCGGY	2 cut(s)	451, 2985
BssECI	CCNNGG	8 cut(s)	316, 497, 556, 562, 624, 690, 1006, 3035
BssNAI	GTATAC	1 cut(s)	2553
BssNI	GRCGYC	1 cut(s)	3280
BssSI	CACGAG	2 cut(s)	531, 1969
BssT1I	CCWWGG	4 cut(s)	497, 556, 624, 690
Bst1107I	GTATAC	1 cut(s)	2553
Bst2BI	CACGAG	2 cut(s)	531, 1969
Bst2UI	CCWGG	6 cut(s)	378, 1007, 2152, 2976, 3036, 3271
Bst4CI	ACNGT	8 cut(s)	90, 1255, 1266, 1990, 2379, 2466, 2550, 3046
Bst6I	CTCTTC	6 cut(s)	328, 1158, 2322, 2412, 2478, 2526
BstACI	GRCGYC	1 cut(s)	3280
BstAPI	GCANNNNNTGC	2 cut(s)	307, 2633
BstAUI	TGTACA	2 cut(s)	2436, 2689
BstBAI	YACGTR	2 cut(s)	1397, 2999
BstBI	TTCGAA	1 cut(s)	2591
BstC8I	GCNNGC	7 cut(s)	411, 415, 1980, 2076, 2837, 2991, 3136
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	6 cut(s)	31, 250, 634, 1640, 1980, 3045
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	2173
BstMAI	GTCTC	8 cut(s)	100, 431, 583, 832, 967, 1370, 2858, 3054
BstNI	CCWGG	6 cut(s)	378, 1007, 2152, 2976, 3036, 3271
BstNSI	RCATGY	4 cut(s)	395, 2300, 2696, 3138
BstSCI	CCNGG	8 cut(s)	101, 376, 704, 1005, 2150, 2974, 3034, 3269
BstSFI	CTRYAG	5 cut(s)	486, 1016, 1761, 2462, 3232
BstSLI	GKGCMC	1 cut(s)	1352
BstUI	CGCG	1 cut(s)	318
BstV2I	GAAGAC	1 cut(s)	688
BstX2I	RGATCY	5 cut(s)	1219, 1231, 1288, 1947, 2276
BstXI	CCANNNNNNTGG	1 cut(s)	1596
BstYI	RGATCY	5 cut(s)	1219, 1231, 1288, 1947, 2276
BstZ17I	GTATAC	1 cut(s)	2553
BsuRI	GGCC	3 cut(s)	404, 458, 561
BtgI	CCRYGG	1 cut(s)	316
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	6 cut(s)	31, 250, 634, 1640, 1980, 3045
BtsI	GCAGTG	3 cut(s)	19, 483, 3021
BtsIMutI	CAGTG	4 cut(s)	19, 483, 3021, 3209
BveI	ACCTGC	3 cut(s)	479, 2225, 2641
Cac8I	GCNNGC	7 cut(s)	411, 415, 1980, 2076, 2837, 2991, 3136
CaiI	CAGNNNCTG	1 cut(s)	2633
CciI	TCATGA	1 cut(s)	1360
CfoI	GCGC	1 cut(s)	2173
Cfr10I	RCCGGY	2 cut(s)	451, 2985
Cfr13I	GGNCC	2 cut(s)	2017, 2366
Cfr42I	CCGCGG	1 cut(s)	319
CseI	GACGC	3 cut(s)	468, 786, 3269
CsiI	ACCWGGT	1 cut(s)	2150
Csp6I	GTAC	3 cut(s)	1050, 2437, 2690
CspAI	ACCGGT	1 cut(s)	451
CviQI	GTAC	3 cut(s)	1050, 2437, 2690
DraI	TTTAAA	3 cut(s)	1192, 1308, 2874
DrdI	GACNNNNNNGTC	1 cut(s)	824
DseDI	GACNNNNNNGTC	1 cut(s)	824
EaeI	YGGCCR	1 cut(s)	456
Eam1104I	CTCTTC	6 cut(s)	328, 1158, 2322, 2412, 2478, 2526
EarI	CTCTTC	6 cut(s)	328, 1158, 2322, 2412, 2478, 2526
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	4 cut(s)	497, 556, 624, 690
Eco147I	AGGCCT	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	2 cut(s)	100, 2858
Eco32I	GATATC	1 cut(s)	853
Eco47I	GGWCC	2 cut(s)	2017, 2366
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	6 cut(s)	68, 909, 1002, 1440, 1913, 2930
Eco72I	CACGTG	1 cut(s)	2999
Eco88I	CYCGRG	2 cut(s)	289, 1920
EcoICRI	GAGCTC	1 cut(s)	31
EcoO109I	RGGNCCY	2 cut(s)	2017, 2366
EcoRI	GAATTC	1 cut(s)	1326
EcoRII	CCWGG	6 cut(s)	376, 1005, 2150, 2974, 3034, 3269
EcoRV	GATATC	1 cut(s)	853
EcoT14I	CCWWGG	4 cut(s)	497, 556, 624, 690
EcoT22I	ATGCAT	2 cut(s)	923, 1185
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	4 cut(s)	497, 556, 624, 690
Esp3I	CGTCTC	1 cut(s)	832
FalI	AAGNNNNNCTT	8 cut(s)	1593, 1625, 2406, 2438, 2913, 2945, 3093, 3125
FaqI	GGGAC	5 cut(s)	377, 519, 913, 2003, 2352
FauI	CCCGC	1 cut(s)	1971
FauNDI	CATATG	1 cut(s)	1771
FbaI	TGATCA	1 cut(s)	2574
FblI	GTMKAC	2 cut(s)	225, 2552
FokI	GGATG	6 cut(s)	38, 257, 641, 1627, 1987, 3052
FriOI	GRGCYC	1 cut(s)	33
FspBI	CTAG	7 cut(s)	557, 1340, 1355, 1368, 2075, 2280, 2324
FspI	TGCGCA	1 cut(s)	2172
GlaI	GCGC	1 cut(s)	2172
GsaI	CCCAGC	1 cut(s)	3079
GsuI	CTGGAG	6 cut(s)	20, 1295, 1659, 2264, 3036, 3253
HaeIII	GGCC	3 cut(s)	404, 458, 561
HapII	CCGG	5 cut(s)	103, 146, 452, 706, 2986
HgaI	GACGC	3 cut(s)	468, 786, 3269
HhaI	GCGC	1 cut(s)	2173
Hin1I	GRCGYC	1 cut(s)	3280
Hin6I	GCGC	1 cut(s)	2171
HinP1I	GCGC	1 cut(s)	2171
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	1863
HpaII	CCGG	5 cut(s)	103, 146, 452, 706, 2986
HphI	GGTGA	3 cut(s)	704, 1088, 1532
Hpy166II	GTNNAC	6 cut(s)	226, 397, 483, 1350, 2294, 2553
Hpy8I	GTNNAC	6 cut(s)	226, 397, 483, 1350, 2294, 2553
Hpy99I	CGWCG	7 cut(s)	230, 233, 236, 239, 353, 374, 3285
HpyCH4III	ACNGT	8 cut(s)	90, 1255, 1266, 1990, 2379, 2466, 2550, 3046
HpyCH4IV	ACGT	6 cut(s)	123, 304, 1153, 1396, 2998, 3184
HpySE526I	ACGT	6 cut(s)	123, 304, 1153, 1396, 2998, 3184
Hsp92I	GRCGYC	1 cut(s)	3280
HspAI	GCGC	1 cut(s)	2171
KflI	GGGWCCC	2 cut(s)	2017, 2366
Ksp22I	TGATCA	1 cut(s)	2574
KspI	CCGCGG	1 cut(s)	319
LguI	GCTCTTC	2 cut(s)	328, 2412
LmnI	GCTCC	7 cut(s)	36, 52, 1270, 1276, 1900, 2245, 2624
MabI	ACCWGGT	1 cut(s)	2150
MaeI	CTAG	7 cut(s)	557, 1340, 1355, 1368, 2075, 2280, 2324
MaeII	ACGT	6 cut(s)	123, 304, 1153, 1396, 2998, 3184
MaeIII	GTNAC	5 cut(s)	2492, 2811, 2953, 3093, 3207
MbiI	CCGCTC	1 cut(s)	9
MfeI	CAATTG	2 cut(s)	797, 843
MflI	RGATCY	5 cut(s)	1219, 1231, 1288, 1947, 2276
MhlI	GDGCHC	4 cut(s)	33, 751, 1352, 1927
MlsI	TGGCCA	1 cut(s)	458
MluNI	TGGCCA	1 cut(s)	458
MmeI	TCCRAC	6 cut(s)	618, 633, 644, 1248, 1266, 1681
Mox20I	TGGCCA	1 cut(s)	458
Mph1103I	ATGCAT	2 cut(s)	923, 1185
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	9 cut(s)	462, 759, 866, 1191, 1307, 1562, 1958, 2135, 2873
Msp20I	TGGCCA	1 cut(s)	458
MspA1I	CMGCKG	4 cut(s)	270, 318, 731, 1623
MspI	CCGG	5 cut(s)	103, 146, 452, 706, 2986
MspR9I	CCNGG	8 cut(s)	103, 378, 706, 1007, 2152, 2976, 3036, 3271
MunI	CAATTG	2 cut(s)	797, 843
Mva1269I	GAATGC	4 cut(s)	435, 1017, 1592, 2742
MvaI	CCWGG	6 cut(s)	378, 1007, 2152, 2976, 3036, 3271
MvnI	CGCG	1 cut(s)	318
NciI	CCSGG	2 cut(s)	103, 706
NdeI	CATATG	1 cut(s)	1771
NheI	GCTAGC	1 cut(s)	2074
NlaIV	GGNNCC	9 cut(s)	314, 331, 1025, 1278, 1290, 2018, 2019, 2367, 2368
NmeAIII	GCCGAG	3 cut(s)	430, 543, 2718
NmuCI	GTSAC	4 cut(s)	2492, 2811, 2953, 3207
NsbI	TGCGCA	1 cut(s)	2172
NsiI	ATGCAT	2 cut(s)	923, 1185
NspI	RCATGY	4 cut(s)	395, 2300, 2696, 3138
NspV	TTCGAA	1 cut(s)	2591
PaeI	GCATGC	1 cut(s)	3138
PaeR7I	CTCGAG	2 cut(s)	289, 1920
PagI	TCATGA	1 cut(s)	1360
PaqCI	CACCTGC	1 cut(s)	2641
PceI	AGGCCT	1 cut(s)	561
PciI	ACATGT	1 cut(s)	2296
PciSI	GCTCTTC	2 cut(s)	328, 2412
PcsI	WCGNNNNNNNCGW	5 cut(s)	231, 234, 421, 430, 2588
PctI	GAATGC	4 cut(s)	435, 1017, 1592, 2742
PflFI	GACNNNGTC	2 cut(s)	2152, 3046
PfoI	TCCNGGA	4 cut(s)	101, 704, 2974, 3269
PinAI	ACCGGT	1 cut(s)	451
PmaCI	CACGTG	1 cut(s)	2999
PmlI	CACGTG	1 cut(s)	2999
Ppu21I	YACGTR	2 cut(s)	1397, 2999
PpuMI	RGGWCCY	2 cut(s)	2017, 2366
PscI	ACATGT	1 cut(s)	2296
Psp124BI	GAGCTC	1 cut(s)	33
Psp5II	RGGWCCY	2 cut(s)	2017, 2366
Psp6I	CCWGG	6 cut(s)	376, 1005, 2150, 2974, 3034, 3269
PspCI	CACGTG	1 cut(s)	2999
PspFI	CCCAGC	1 cut(s)	3075
PspGI	CCWGG	6 cut(s)	376, 1005, 2150, 2974, 3034, 3269
PspN4I	GGNNCC	9 cut(s)	314, 331, 1025, 1278, 1290, 2018, 2019, 2367, 2368
PspPI	GGNCC	2 cut(s)	2017, 2366
PspPPI	RGGWCCY	2 cut(s)	2017, 2366
PspXI	VCTCGAGB	1 cut(s)	1920
PstI	CTGCAG	2 cut(s)	490, 1020
PstNI	CAGNNNCTG	1 cut(s)	2633
PsuI	RGATCY	5 cut(s)	1219, 1231, 1288, 1947, 2276
PsyI	GACNNNGTC	2 cut(s)	2152, 3046
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	3 cut(s)	1051, 2438, 2691
RsaNI	GTAC	3 cut(s)	1050, 2437, 2690
SacI	GAGCTC	1 cut(s)	33
SacII	CCGCGG	1 cut(s)	319
SalI	GTCGAC	1 cut(s)	224
SapI	GCTCTTC	2 cut(s)	328, 2412
SaqAI	TTAA	9 cut(s)	462, 759, 866, 1191, 1307, 1562, 1958, 2135, 2873
Sau96I	GGNCC	2 cut(s)	2017, 2366
ScrFI	CCNGG	8 cut(s)	103, 378, 706, 1007, 2152, 2976, 3036, 3271
SduI	GDGCHC	4 cut(s)	33, 751, 1352, 1927
SexAI	ACCWGGT	1 cut(s)	2150
SfcI	CTRYAG	5 cut(s)	486, 1016, 1761, 2462, 3232
Sfr274I	CTCGAG	2 cut(s)	289, 1920
Sfr303I	CCGCGG	1 cut(s)	319
SfuI	TTCGAA	1 cut(s)	2591
SgrAI	CRCCGGYG	1 cut(s)	451
SgrBI	CCGCGG	1 cut(s)	319
SinI	GGWCC	2 cut(s)	2017, 2366
SlaI	CTCGAG	2 cut(s)	289, 1920
SmiI	ATTTAAAT	1 cut(s)	1308
SmlI	CTYRAG	5 cut(s)	289, 586, 1920, 2846, 3110
SmoI	CTYRAG	5 cut(s)	289, 586, 1920, 2846, 3110
SphI	GCATGC	1 cut(s)	3138
SseBI	AGGCCT	1 cut(s)	561
SspI	AATATT	3 cut(s)	1819, 2401, 2858
SspMI	CTAG	7 cut(s)	557, 1340, 1355, 1368, 2075, 2280, 2324
SstI	GAGCTC	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	561
StyD4I	CCNGG	8 cut(s)	101, 376, 704, 1005, 2150, 2974, 3034, 3269
StyI	CCWWGG	4 cut(s)	497, 556, 624, 690
SwaI	ATTTAAAT	1 cut(s)	1308
TaaI	ACNGT	8 cut(s)	90, 1255, 1266, 1990, 2379, 2466, 2550, 3046
TaiI	ACGT	6 cut(s)	126, 307, 1156, 1399, 3001, 3187
TatI	WGTACW	3 cut(s)	1049, 2436, 2689
TauI	GCSGC	9 cut(s)	12, 184, 187, 190, 217, 273, 321, 335, 2074
Tru1I	TTAA	9 cut(s)	462, 759, 866, 1191, 1307, 1562, 1958, 2135, 2873
Tru9I	TTAA	9 cut(s)	462, 759, 866, 1191, 1307, 1562, 1958, 2135, 2873
TscAI	CASTG	4 cut(s)	19, 490, 3021, 3216
TseFI	GTSAC	4 cut(s)	2492, 2811, 2953, 3207
Tsp45I	GTSAC	4 cut(s)	2492, 2811, 2953, 3207
TspDTI	ATGAA	6 cut(s)	688, 927, 1377, 1749, 1788, 2813
TspGWI	ACGGA	5 cut(s)	886, 1670, 1732, 2053, 2072
TspRI	CASTG	4 cut(s)	19, 490, 3021, 3216
Tth111I	GACNNNGTC	2 cut(s)	2152, 3046
VneI	GTGCAC	1 cut(s)	1348
VpaK11BI	GGWCC	2 cut(s)	2017, 2366
XapI	RAATTY	4 cut(s)	680, 1326, 1628, 2569
XceI	RCATGY	4 cut(s)	395, 2300, 2696, 3138
XhoI	CTCGAG	2 cut(s)	289, 1920
XmaJI	CCTAGG	1 cut(s)	556
XmiI	GTMKAC	2 cut(s)	225, 2552
XspI	CTAG	7 cut(s)	557, 1340, 1355, 1368, 2075, 2280, 2324
Zsp2I	ATGCAT	2 cut(s)	923, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.