pycom03g04840

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0007365
Physical Location & Seq
Reverse (-)
3779140 .. 3780739
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1110 bp
ATGGCTGGAATGTACGGTCAAGATGGCGATGGCGCCCCTCCTCCATACGGATCTAGCGGCGGCGGTGGCTATGGTGGCTCTGGCGGGTACGGAGGCGGTTCTGGTGGTTATGGAGGTGGTGGTGGCGGTGGAGGCTATGGTGGAAGCGGCGGTGGTGGCTATGGAGGTAAGGGCAGCGATGGTTATGGAGGCGGTGGCGGACGTGGCGGTCGAGGTGGAGGATATCAAGGAGATCGCGGTGGTGGCGGCAGAGGTGGTGACCGCGGTGGCGGCGGTAGAGGTGGCCGCGGTGGCAGTGGAAGAGATGGCGATTGGCTGTGCCCTAATCCAGGCTGTGGGAATTTGAACTTTGCAAGAAGAGTTGAGTGTAACAAGTGTGGCACTCCCTCTCCTTCGGGTGCCGCCGGTGGTGATCGTGGCAGTGGTGGTGGAGGCAATTATAACAGAGGAGGAACTGGTGGTGGTAACCGTGGTGGTAGGGGTGGTAACTATGATGGGGGTCGAAGTGGTAACTATGATGGTGGTCGAAGTGGTAACTATGAAGGAGGTAAAGGTAGCAGTTATGACGAAGGTAGAGGCGGTAGTTATGAAAGTAGAGGTGAAGGTGGTAGTAGGGGTGGTTCTTATGGTGGTAGCCAAGGAAGAGATGATGGGGGTTACGGTCAGGTTCCTCCAAATGCACCACCGTCCTATGGTACAGCTGGAGGCAATTACCCATCTTACAATGCTAGTTATGGAACAGATGCTGTTCCGCCTCCTACAAGTTATACTGGTGGACCTGCATCATATCCCCCATCTTATGGTGGTCCTGCAGGCGGTTATGGTGGTGATGGTCCTGGTGATGCAAGGGGTGGTGCCCGAGGGGGCCCTCCTGCTAAATATGATGGTGGATACGGTGCTGGTGGTCGTGGTGGATATGGAAGTGCTGCTACGGAAGCCCCAGCTAAGGTGAAGCAGTGCGACCAGAATTGTGATGATACTTGTGGCAATGCTAGAATCTACATATCAAACTTGCCACCAGATGTTACTGTTGACGAACTTCAGCAGCTCTTTGGAGGCATTGGACAAGTGGGAAGAATCAAACAGAAACGTGGCTATAAGGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
RRM_1 zf-RanBP

Protein Analysis

370

Amino Acids

35.1

Weight (kDa)

8.8

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 101 - 132 2.3e-06 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
AasI GACNNNNNNGTC 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 787
AccB1I GGYRCC 3 cut(s) 32, 398, 854
AccB7I CCANNNNNTGG 2 cut(s) 335, 800
AccII CGCG 3 cut(s) 237, 264, 288
AclWI GGATC 1 cut(s) 58
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 1 cut(s) 1025
AcyI GRCGYC 1 cut(s) 33
AfaI GTAC 3 cut(s) 14, 89, 697
AfiI CCNNNNNNNGG 7 cut(s) 47, 329, 335, 692, 800, 815, 946
AgsI TTSAA 1 cut(s) 346
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 2 cut(s) 328, 835
AluBI AGCT 3 cut(s) 701, 944, 1048
AluI AGCT 3 cut(s) 701, 944, 1048
AlwI GGATC 1 cut(s) 58
AlwNI CAGNNNCTG 1 cut(s) 746
Ama87I CYCGRG 1 cut(s) 858
AoxI GGCC 2 cut(s) 283, 865
ApaI GGGCCC 1 cut(s) 869
ApeKI GCWGC 3 cut(s) 174, 926, 1045
ApoI RAATTY 1 cut(s) 340
AspLEI GCGC 1 cut(s) 35
AspS9I GGNCC 5 cut(s) 776, 806, 833, 865, 866
AsuHPI GGTGA 6 cut(s) 269, 422, 611, 839, 851, 961
AvaI CYCGRG 1 cut(s) 858
AvaII GGWCC 3 cut(s) 776, 806, 833
BaeGI GKGCMC 3 cut(s) 323, 859, 869
BanI GGYRCC 3 cut(s) 32, 398, 854
BanII GRGCYC 1 cut(s) 869
BarI GAAGNNNNNNTAC 2 cut(s) 913, 945
BbvI GCAGC 3 cut(s) 186, 913, 1057
BciT130I CCWGG 2 cut(s) 330, 837
BciVI GTATCC 1 cut(s) 884
BfaI CTAG 3 cut(s) 54, 729, 993
BfmI CTRYAG 1 cut(s) 810
BfoI RGCGCY 1 cut(s) 36
BfuAI ACCTGC 1 cut(s) 787
BfuI GTATCC 1 cut(s) 884
BglI GCCNNNNNGGC 1 cut(s) 291
Bme1390I CCNGG 2 cut(s) 330, 837
Bme18I GGWCC 3 cut(s) 776, 806, 833
BmeT110I CYCGRG 1 cut(s) 858
BmgBI CACGTC 1 cut(s) 203
BmgT120I GGNCC 5 cut(s) 776, 806, 833, 865, 866
BmiI GGNNCC 6 cut(s) 34, 400, 669, 856, 866, 867
BmrFI CCNGG 2 cut(s) 330, 837
BmsI GCATC 3 cut(s) 733, 791, 832
BpmI CTGGAG 1 cut(s) 723
Bpu10I CCTNAGC 1 cut(s) 945
Bsa29I ATCGAT 1 cut(s) 1105
BsaHI GRCGYC 1 cut(s) 33
BsaJI CCNNGG 5 cut(s) 262, 286, 469, 637, 859
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bsc4I CCNNNNNNNGG 7 cut(s) 47, 329, 335, 692, 800, 815, 946
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 2 cut(s) 460, 775
Bse3DI GCAATG 1 cut(s) 994
BseBI CCWGG 2 cut(s) 330, 837
BseCI ATCGAT 1 cut(s) 1105
BseDI CCNNGG 5 cut(s) 262, 286, 469, 637, 859
BseLI CCNNNNNNNGG 7 cut(s) 47, 329, 335, 692, 800, 815, 946
BseMI GCAATG 1 cut(s) 994
BseNI ACTGG 2 cut(s) 460, 775
BseRI GAGGAG 2 cut(s) 30, 462
BseSI GKGCMC 3 cut(s) 323, 859, 869
BseXI GCAGC 3 cut(s) 186, 913, 1057
BseYI CCCAGC 1 cut(s) 940
Bsh1236I CGCG 3 cut(s) 237, 264, 288
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 285, 867
BshNI GGYRCC 3 cut(s) 32, 398, 854
BshVI ATCGAT 1 cut(s) 1105
BsiEI CGRYCG 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 858
BsiSI CCGG 1 cut(s) 405
BslI CCNNNNNNNGG 7 cut(s) 47, 329, 335, 692, 800, 815, 946
BsnI GGCC 2 cut(s) 285, 867
BsoBI CYCGRG 1 cut(s) 858
Bsp120I GGGCCC 1 cut(s) 865
Bsp1286I GDGCHC 3 cut(s) 323, 859, 869
Bsp143I GATC 4 cut(s) 50, 232, 412, 1102
BspANI GGCC 2 cut(s) 285, 867
BspDI ATCGAT 1 cut(s) 1105
BspFNI CGCG 3 cut(s) 237, 264, 288
BspLI GGNNCC 6 cut(s) 34, 400, 669, 856, 866, 867
BspMAI CTGCAG 1 cut(s) 814
BspMI ACCTGC 1 cut(s) 787
BspPI GGATC 1 cut(s) 58
BspT107I GGYRCC 3 cut(s) 32, 398, 854
BsrDI GCAATG 1 cut(s) 994
BsrFI RCCGGY 1 cut(s) 404
BsrI ACTGG 2 cut(s) 460, 775
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 5 cut(s) 262, 286, 469, 637, 859
BssMI GATC 4 cut(s) 50, 232, 412, 1102
BssNI GRCGYC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 637
Bst2UI CCWGG 2 cut(s) 330, 837
Bst4CI ACNGT 6 cut(s) 17, 470, 662, 687, 896, 1030
Bst6I CTCTTC 3 cut(s) 295, 352, 637
BstACI GRCGYC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 814
BstDEI CTNAG 1 cut(s) 945
BstDSI CCRYGG 3 cut(s) 262, 286, 469
BstEII GGTNACC 2 cut(s) 257, 464
BstENI CCTNNNNNAGG 1 cut(s) 327
BstFNI CGCG 3 cut(s) 237, 264, 288
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 4 cut(s) 53, 235, 415, 1105
BstMBI GATC 4 cut(s) 50, 232, 412, 1102
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 9 cut(s) 66, 75, 132, 156, 204, 243, 270, 291, 935
BstNI CCWGG 2 cut(s) 330, 837
BstPI GGTNACC 2 cut(s) 257, 464
BstSCI CCNGG 2 cut(s) 328, 835
BstSFI CTRYAG 1 cut(s) 810
BstSLI GKGCMC 3 cut(s) 323, 859, 869
BstUI CGCG 3 cut(s) 237, 264, 288
BstV1I GCAGC 3 cut(s) 186, 913, 1057
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 1105
BsuI GTATCC 1 cut(s) 884
BsuRI GGCC 2 cut(s) 285, 867
BsuTUI ATCGAT 1 cut(s) 1105
BtgI CCRYGG 3 cut(s) 262, 286, 469
BtgZI GCGATG 2 cut(s) 42, 192
BtrI CACGTC 1 cut(s) 203
BtsI GCAGTG 3 cut(s) 301, 427, 962
BtsIMutI CAGTG 3 cut(s) 301, 427, 962
BveI ACCTGC 1 cut(s) 787
Cac8I GCNNGC 1 cut(s) 814
CaiI CAGNNNCTG 1 cut(s) 746
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 404
Cfr13I GGNCC 5 cut(s) 776, 806, 833, 865, 866
Cfr42I CCGCGG 2 cut(s) 265, 289
ClaI ATCGAT 1 cut(s) 1105
Csp6I GTAC 3 cut(s) 13, 88, 696
CviQI GTAC 3 cut(s) 13, 88, 696
DdeI CTNAG 1 cut(s) 945
DinI GGCGCC 1 cut(s) 34
DpnI GATC 4 cut(s) 52, 234, 414, 1104
DpnII GATC 4 cut(s) 50, 232, 412, 1102
DrdI GACNNNNNNGTC 1 cut(s) 207
DseDI GACNNNNNNGTC 1 cut(s) 207
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 3 cut(s) 295, 352, 637
EarI CTCTTC 3 cut(s) 295, 352, 637
EciI GGCGGA 2 cut(s) 213, 741
Eco130I CCWWGG 1 cut(s) 637
Eco24I GRGCYC 1 cut(s) 869
Eco32I GATATC 1 cut(s) 224
Eco47I GGWCC 3 cut(s) 776, 806, 833
Eco57I CTGAAG 1 cut(s) 1025
Eco88I CYCGRG 1 cut(s) 858
Eco91I GGTNACC 2 cut(s) 257, 464
EcoNI CCTNNNNNAGG 1 cut(s) 327
EcoO109I RGGNCCY 2 cut(s) 865, 866
EcoO65I GGTNACC 2 cut(s) 257, 464
EcoRII CCWGG 2 cut(s) 328, 835
EcoRV GATATC 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 637
EcoT38I GRGCYC 1 cut(s) 869
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 637
FauI CCCGC 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 869
FspBI CTAG 3 cut(s) 54, 729, 993
GlaI GCGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 944
GsuI CTGGAG 1 cut(s) 723
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 2 cut(s) 285, 867
HapII CCGG 1 cut(s) 405
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 33
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 1033
HindII GTYRAC 1 cut(s) 1033
HinfI GANTC 2 cut(s) 996, 1077
HpaII CCGG 1 cut(s) 405
HphI GGTGA 6 cut(s) 269, 422, 611, 839, 851, 961
Hpy166II GTNNAC 2 cut(s) 776, 1033
Hpy188III TCNNGA 1 cut(s) 20
Hpy8I GTNNAC 2 cut(s) 776, 1033
HpyAV CCTTC 4 cut(s) 402, 536, 563, 596
HpyCH4III ACNGT 6 cut(s) 17, 470, 662, 687, 896, 1030
HpyCH4IV ACGT 2 cut(s) 202, 1090
HpyCH4V TGCA 5 cut(s) 353, 680, 782, 812, 845
HpyF10VI GCNNNNNNNGC 9 cut(s) 66, 75, 132, 156, 204, 243, 270, 291, 935
HpyF3I CTNAG 1 cut(s) 945
HpySE526I ACGT 2 cut(s) 202, 1090
Hsp92I GRCGYC 1 cut(s) 33
HspAI GCGC 1 cut(s) 33
KasI GGCGCC 1 cut(s) 32
KspI CCGCGG 2 cut(s) 265, 289
Kzo9I GATC 4 cut(s) 50, 232, 412, 1102
Lsp1109I GCAGC 3 cut(s) 186, 913, 1057
LweI GCATC 3 cut(s) 733, 791, 832
MaeI CTAG 3 cut(s) 54, 729, 993
MaeII ACGT 2 cut(s) 202, 1090
MaeIII GTNAC 8 cut(s) 257, 368, 464, 485, 509, 533, 656, 1024
MalI GATC 4 cut(s) 52, 234, 414, 1104
MboI GATC 4 cut(s) 50, 232, 412, 1102
MboII GAAGA 4 cut(s) 312, 369, 654, 1086
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 3 cut(s) 323, 859, 869
MluCI AATT 4 cut(s) 340, 436, 709, 967
Mly113I GGCGCC 1 cut(s) 33
MspA1I CMGCKG 3 cut(s) 264, 288, 701
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 2 cut(s) 330, 837
MvaI CCWGG 2 cut(s) 330, 837
MvnI CGCG 3 cut(s) 237, 264, 288
MwoI GCNNNNNNNGC 9 cut(s) 66, 75, 132, 156, 204, 243, 270, 291, 935
NarI GGCGCC 1 cut(s) 33
NdeII GATC 4 cut(s) 50, 232, 412, 1102
NlaIV GGNNCC 6 cut(s) 34, 400, 669, 856, 866, 867
NmuCI GTSAC 1 cut(s) 257
PcsI WCGNNNNNNNCGW 1 cut(s) 208
PfeI GAWTC 2 cut(s) 996, 1077
PflMI CCANNNNNTGG 2 cut(s) 335, 800
PluTI GGCGCC 1 cut(s) 36
PsiI TTATAA 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 328, 835
PspEI GGTNACC 2 cut(s) 257, 464
PspFI CCCAGC 1 cut(s) 940
PspGI CCWGG 2 cut(s) 328, 835
PspN4I GGNNCC 6 cut(s) 34, 400, 669, 856, 866, 867
PspOMI GGGCCC 1 cut(s) 865
PspPI GGNCC 5 cut(s) 776, 806, 833, 865, 866
PsrI GAACNNNNNNTAC 2 cut(s) 604, 636
PstI CTGCAG 1 cut(s) 814
PstNI CAGNNNCTG 1 cut(s) 746
PsuI RGATCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 3 cut(s) 14, 89, 697
RsaNI GTAC 3 cut(s) 13, 88, 696
SacII CCGCGG 2 cut(s) 265, 289
Sau3AI GATC 4 cut(s) 50, 232, 412, 1102
Sau96I GGNCC 5 cut(s) 776, 806, 833, 865, 866
SbfI CCTGCAGG 1 cut(s) 814
ScrFI CCNGG 2 cut(s) 330, 837
SdaI CCTGCAGG 1 cut(s) 814
SduI GDGCHC 3 cut(s) 323, 859, 869
SfaNI GCATC 3 cut(s) 733, 791, 832
SfcI CTRYAG 1 cut(s) 810
SfoI GGCGCC 1 cut(s) 34
Sfr303I CCGCGG 2 cut(s) 265, 289
SgrAI CRCCGGYG 1 cut(s) 404
SgrBI CCGCGG 2 cut(s) 265, 289
SinI GGWCC 3 cut(s) 776, 806, 833
Sse8387I CCTGCAGG 1 cut(s) 814
Sse9I AATT 4 cut(s) 340, 436, 709, 967
SspDI GGCGCC 1 cut(s) 32
SspMI CTAG 3 cut(s) 54, 729, 993
StyD4I CCNGG 2 cut(s) 328, 835
StyI CCWWGG 1 cut(s) 637
TaaI ACNGT 6 cut(s) 17, 470, 662, 687, 896, 1030
TaiI ACGT 2 cut(s) 205, 1093
TaqI TCGA 4 cut(s) 211, 502, 526, 1105
TasI AATT 4 cut(s) 340, 436, 709, 967
TauI GCSGC 7 cut(s) 60, 63, 150, 249, 273, 288, 404
TfiI GAWTC 2 cut(s) 996, 1077
TscAI CASTG 3 cut(s) 301, 427, 962
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 3 cut(s) 174, 926, 1045
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 2 cut(s) 555, 603
TspGWI ACGGA 3 cut(s) 63, 105, 947
TspRI CASTG 3 cut(s) 301, 427, 962
Van91I CCANNNNNTGG 2 cut(s) 335, 800
VpaK11BI GGWCC 3 cut(s) 776, 806, 833
XagI CCTNNNNNAGG 1 cut(s) 327
XapI RAATTY 1 cut(s) 340
XspI CTAG 3 cut(s) 54, 729, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.