Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005664

Physical Location & Seq

Genomic Coordinates Forward (+)

3826023 .. 3828190

Gene Structure 2168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCCTCGAATCCGGAGAACGAACCTACGGCCTCGAGAGAGGTCGAGAAGCCACCGATTGAGCCCATACGGCTGCCCACGGTGGAGGAGATGCGCGGCCAAGACATTTGGAACAACTGCGCCGTACGCAGCGTTGTTAGTGGAGTTATGGGTGGTGGGCTTGGGTTGATGATGGGTTTGCTTCTCGGAGCGTTAGACACCCCTTTAATGCAAGACGAAATGACTGGTAAACAGCAATTCATTTACCAAGCAAAGTCGATGGGCCGGAGGAGTTGGAGTTCAGCAAAAGCATTTGCAGTTATGGGATTTGTTTTCTCAGCTGCTGAGTGTGTTGTTGAAAAGGCACGAGCTAAACATGACACAACAAATACAGTTGTTGCTGGATGTGTAACTGGTGGTGCACTCTCAGCCAAAGCTGGTCCACAAGCGGCCTGTGTTGGTTGTGCCGGCTTTGCTGCATTTTCGGTGCTGATAGAGAAGTTTTTGGATAGACATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008104 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0034613 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051641 GO:0061458 GO:0070727

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

167

Amino Acids

17.58

Weight (kDa)

6.13

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	40 - 155	3.8e-30	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005664)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10110 AT3G10110 AT3G10110 AT3G10110
fragaria_vesca	FvH4_3g39470
malus_domestica	MD02G1253300.v1.1 MD03G1061000.v1.1 MD08G1143900.v1.1 MD11G1063700.v1.1 MD11G1064100.v1.1 MD11G1064200.v1.1 MD16G1117700.v1.1
prunus_persica	Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1 Prupe.6G051100_v2.0.a1
pyrus_communis	pycom03g04910 pycom05g20220 pycom10g16990 pycom11g05370
rosa_chinensis	RchiOBHm_Chr5g0071211
rosa_laevigata	RLG00000036191
rosa_roxburghii	Rroxscaffold_1G00009930
rosa_rugosa	Rorug05G0410500
rosa_samantha	Rh5AG466500 Rh5BG485000 Rh5CG509400 Rh5DG496300
rosa_wichuraiana	Rw5G043330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	2 cut(s)	96, 428
AcoI	YGGCCR	1 cut(s)	97
AfaI	GTAC	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	338
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	3 cut(s)	320, 350, 416
AluI	AGCT	3 cut(s)	320, 350, 416
Alw21I	GWGCWC	1 cut(s)	403
Alw44I	GTGCAC	1 cut(s)	399
AlwNI	CAGNNNCTG	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	34
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	5 cut(s)	3, 30, 97, 262, 429
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	4 cut(s)	73, 129, 320, 455
AspLEI	GCGC	2 cut(s)	96, 122
AspS9I	GGNCC	2 cut(s)	262, 419
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	419
BaeGI	GKGCMC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	4 cut(s)	60, 141, 307, 442
BccI	CCATC	2 cut(s)	166, 253
BceAI	ACGGC	3 cut(s)	45, 86, 107
BglI	GCCNNNNNGGC	1 cut(s)	70
BisI	GCNGC	6 cut(s)	74, 97, 130, 321, 429, 456
BlsI	GCNGC	6 cut(s)	75, 98, 131, 322, 430, 457
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	262, 419
BmsI	GCATC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	2 cut(s)	229, 397
BseAI	TCCGGA	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	389
BseMII	CTCAG	3 cut(s)	315, 330, 420
BseNI	ACTGG	2 cut(s)	229, 397
BseRI	GAGGAG	2 cut(s)	101, 283
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	4 cut(s)	60, 141, 307, 442
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	5 cut(s)	5, 32, 99, 264, 431
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	3 cut(s)	14, 265, 447
BsiWI	CGTACG	1 cut(s)	124
BsnI	GGCC	5 cut(s)	5, 32, 99, 264, 431
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	66, 403
Bsp13I	TCCGGA	1 cut(s)	13
BspACI	CCGC	2 cut(s)	96, 428
BspANI	GGCC	5 cut(s)	5, 32, 99, 264, 431
BspCNI	CTCAG	3 cut(s)	316, 329, 419
BspEI	TCCGGA	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	2 cut(s)	229, 397
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	82, 373
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	3 cut(s)	316, 324, 406
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	96, 122
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 126, 407, 452
BstSLI	GKGCMC	1 cut(s)	403
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	4 cut(s)	60, 141, 307, 442
BsuRI	GGCC	5 cut(s)	5, 32, 99, 264, 431
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	448
CaiI	CAGNNNCTG	1 cut(s)	323
CfoI	GCGC	2 cut(s)	96, 122
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	2 cut(s)	262, 419
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	2 cut(s)	356, 494
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	3 cut(s)	316, 324, 406
EaeI	YGGCCR	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	66
FaeI	CATG	2 cut(s)	359, 497
FaiI	YATR	5 cut(s)	68, 149, 302, 357, 495
FatI	CATG	2 cut(s)	355, 493
Fnu4HI	GCNGC	6 cut(s)	74, 97, 130, 321, 429, 456
FokI	GGATG	1 cut(s)	396
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	6 cut(s)	74, 97, 130, 321, 429, 456
GlaI	GCGC	2 cut(s)	95, 121
GluI	GCNGC	6 cut(s)	74, 97, 130, 321, 429, 456
HaeIII	GGCC	5 cut(s)	5, 32, 99, 264, 431
HapII	CCGG	3 cut(s)	14, 265, 447
HhaI	GCGC	2 cut(s)	96, 122
Hin1II	CATG	2 cut(s)	359, 497
Hin6I	GCGC	2 cut(s)	94, 120
HinP1I	GCGC	2 cut(s)	94, 120
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	3 cut(s)	14, 265, 447
Hpy166II	GTNNAC	3 cut(s)	230, 401, 422
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	3 cut(s)	14, 36, 46
Hpy8I	GTNNAC	3 cut(s)	230, 401, 422
HpyCH4III	ACNGT	2 cut(s)	82, 373
HpyCH4V	TGCA	4 cut(s)	211, 296, 401, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 126, 407, 452
HpyF3I	CTNAG	3 cut(s)	316, 324, 406
Hsp92II	CATG	2 cut(s)	359, 497
HspAI	GCGC	2 cut(s)	94, 120
Kpn2I	TCCGGA	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	446
KroNI	GCCGGC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	8 cut(s)	27, 210, 278, 366, 378, 402, 445, 460
Lsp1109I	GCAGC	4 cut(s)	60, 141, 307, 442
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	388
MhlI	GDGCHC	2 cut(s)	66, 403
MluCI	AATT	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	5 cut(s)	16, 34, 43, 79, 261
MroI	TCCGGA	1 cut(s)	13
MroNI	GCCGGC	1 cut(s)	446
MseI	TTAA	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	3 cut(s)	14, 265, 447
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	70, 126, 407, 452
NaeI	GCCGGC	1 cut(s)	448
NgoMIV	GCCGGC	1 cut(s)	446
NlaIII	CATG	2 cut(s)	359, 497
PaeR7I	CTCGAG	1 cut(s)	34
PdiI	GCCGGC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	10
Pfl23II	CGTACG	1 cut(s)	124
PkrI	GCNGC	6 cut(s)	75, 98, 131, 322, 430, 457
PspLI	CGTACG	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	262, 419
PstNI	CAGNNNCTG	1 cut(s)	323
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	6 cut(s)	74, 97, 130, 321, 429, 456
Sau96I	GGNCC	2 cut(s)	262, 419
SduI	GDGCHC	2 cut(s)	66, 403
SetI	ASST	5 cut(s)	28, 45, 322, 352, 418
SfaNI	GCATC	1 cut(s)	81
Sfr274I	CTCGAG	1 cut(s)	34
SinI	GGWCC	1 cut(s)	419
SlaI	CTCGAG	1 cut(s)	34
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	236
SsiI	CCGC	2 cut(s)	96, 428
TaaI	ACNGT	2 cut(s)	82, 373
TaqI	TCGA	4 cut(s)	8, 35, 45, 257
TasI	AATT	1 cut(s)	236
TauI	GCSGC	2 cut(s)	99, 431
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseI	GCWGC	4 cut(s)	73, 129, 320, 455
TspDTI	ATGAA	1 cut(s)	229
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.