Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007736

Physical Location & Seq

Genomic Coordinates Reverse (-)

9664071 .. 9669458

Gene Structure 5388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10480.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTCTGGTACCCTCGTCTTCCCCACTGATCGCGGAGGTCGACATGGGAACCGACTACTCCGCCCCCACTGTCCGCGCCACCGTTGTCCAAGCCTCCACCGTCTTCTACGACACCCCTGCCACTCTAGATAAGGCTGAGAGGTTATTGGCTGAAGCAGCAGGATATGGTGCCCAGTTGGTTGTGTTTCCTGAAGCATTTGTGGGTGGTTATCCACGGGGGTCGAATTTTGGCGTTGTCATTGGGAACAGAACAGCTAAGGGTAAAGAAGACTTCAGAAAGTATCATGCTGCTGCCATTGATGTGCCTGGTCCTGAAGTTGATCGATTGGCAGCAATGGCTGGAAAGTACAAGGTATTCCTGGTAATGGGTGTGATAGAGAGAGATGGATATACACTCTATTGCACTGTTCTGTTTTTTGATTCTCAAGGTTGCTACTTGGGAAAGCACCGAAAAATGATGCCCACAGCACTGGAGCGGATCATTTGGGGATTTGGAGATGGATCTACAATTCCTGTGTTTGAGACTCCGATTGGAAAAATAGGTGCTGCCATTTGTTGGGAAAATAAGATGCCACTTCTAAGGACAGCAATGTATGCTAAAGGCATTGAGATATATTGTGCTCCTACGGCTGATTCCAGGGATTTATGGCAAGCATCAATGACTCATATTGCCTTAGAGGGTGGGTGTTTTGTCCTATCAGCCAATCAGTTCTGTCGAAGGAAAGACTACCCCCCTCCTCCAGAATATGCATTTGCAGGAGAGGAACCTGCTCCAGATTCTGTCGTCTGTGCCGGAGGCAGTGTTATTATCTCACCGTCAGGGACTGTTCTTGCTGGACCCAATTATGATGGGGAGGCACTCATCTCAGCAGATCTTGATCTTGGAGAAATAGCAAGGGCGAAATTTGACTTTGATGTGGTTGGCCACTATTCACGGCCCGAAGTGCTTAGCTTGATCGTGAGGGACCATCCAGCAACTCCAGTTACTTTCACATCAGCCTCAGCAAAGACCGATCGCGAAGTCTCACATAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00380 ko00460 ko00627 ko00643 ko00910 ko01100 ko01110 ko01120 map00380 map00460 map00627 map00643 map00910 map01100 map01110 map01120

Pfam Domains

Protein Families

CN_hydrolase

Protein Analysis

347

Amino Acids

37.24

Weight (kDa)

5.35

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44300 AT3G44310 AT3G44310 AT3G44310 AT3G44310 AT3G44320 AT5G22300 AT5G22300
fragaria_vesca	FvH4_3g25810 FvH4_3g25810 FvH4_3g25810
malus_domestica	MD03G1150700.v1.1
prunus_persica	Prupe.6G137600_v2.0.a1
pyrus_communis	pycom03g10480
rosa_chinensis	RchiOBHm_Chr5g0047031
rosa_laevigata	RLG00000034459
rosa_multiflora	Rmu_sc0002756.1_g000007 Rmu_sc0005544.1_g000009
rosa_roxburghii	Rroxscaffold_1G00034410
rosa_rugosa	Rorug05G0233300
rosa_samantha	Rh5AG312500 Rh5BG321600 Rh5CG347800
rosa_wichuraiana	Rw5G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	778
Acc65I	GGTACC	1 cut(s)	10
AccB1I	GGYRCC	2 cut(s)	10, 170
AccB7I	CCANNNNNTGG	1 cut(s)	558
AccBSI	CCGCTC	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	3 cut(s)	35, 78, 1020
AciI	CCGC	4 cut(s)	35, 63, 76, 478
AclWI	GGATC	2 cut(s)	488, 511
AcoI	YGGCCR	1 cut(s)	925
AcsI	RAATTY	2 cut(s)	226, 905
AcuI	CTGAAG	4 cut(s)	174, 213, 259, 336
AfaI	GTAC	2 cut(s)	12, 350
AfiI	CCNNNNNNNGG	2 cut(s)	367, 558
AjnI	CCWGG	3 cut(s)	307, 360, 638
AluBI	AGCT	2 cut(s)	257, 954
AluI	AGCT	2 cut(s)	257, 954
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	2 cut(s)	518, 1030
AlwI	GGATC	2 cut(s)	488, 511
AlwNI	CAGNNNCTG	2 cut(s)	782, 827
AoxI	GGCC	2 cut(s)	925, 938
ApeKI	GCWGC	5 cut(s)	158, 290, 293, 332, 548
ApoI	RAATTY	2 cut(s)	226, 905
Asp718I	GGTACC	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	4 cut(s)	311, 839, 939, 967
AsuHPI	GGTGA	1 cut(s)	807
AvaII	GGWCC	3 cut(s)	311, 839, 967
BaeGI	GKGCMC	1 cut(s)	175
BaeI	ACNNNNGTAYC	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	927
BanI	GGYRCC	2 cut(s)	10, 170
BbsI	GAAGAC	3 cut(s)	12, 97, 276
Bbv12I	GWGCWC	1 cut(s)	625
BbvCI	CCTCAGC	1 cut(s)	1003
BbvI	GCAGC	5 cut(s)	170, 277, 280, 344, 535
BccI	CCATC	4 cut(s)	380, 494, 845, 978
BceAI	ACGGC	2 cut(s)	645, 953
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	3 cut(s)	309, 362, 640
BcoDI	GTCTC	2 cut(s)	518, 1030
BfaI	CTAG	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	778
BglII	AGATCT	1 cut(s)	874
BisI	GCNGC	5 cut(s)	159, 291, 294, 333, 549
BlpI	GCTNAGC	1 cut(s)	950
BlsI	GCNGC	5 cut(s)	160, 292, 295, 334, 550
Bme1390I	CCNGG	3 cut(s)	309, 362, 640
Bme18I	GGWCC	3 cut(s)	311, 839, 967
BmgT120I	GGNCC	4 cut(s)	311, 839, 939, 967
BmiI	GGNNCC	6 cut(s)	12, 52, 172, 768, 841, 968
BmrFI	CCNGG	3 cut(s)	309, 362, 640
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	3 cut(s)	450, 561, 665
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	3 cut(s)	12, 97, 276
BpmI	CTGGAG	4 cut(s)	494, 726, 759, 966
Bpu10I	CCTNAGC	2 cut(s)	258, 1003
Bpu1102I	GCTNAGC	1 cut(s)	950
BpuEI	CTTGAG	1 cut(s)	411
Bsa29I	ATCGAT	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	879
BsaJI	CCNNGG	2 cut(s)	215, 639
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 558
Bse1I	ACTGG	3 cut(s)	175, 477, 983
Bse3DI	GCAATG	2 cut(s)	342, 597
Bse8I	GATNNNNATC	1 cut(s)	879
BseBI	CCWGG	3 cut(s)	309, 362, 640
BseCI	ATCGAT	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	215, 639
BseGI	GGATG	1 cut(s)	970
BseJI	GATNNNNATC	1 cut(s)	879
BseLI	CCNNNNNNNGG	2 cut(s)	367, 558
BseMI	GCAATG	2 cut(s)	342, 597
BseMII	CTCAG	3 cut(s)	129, 882, 1017
BseNI	ACTGG	3 cut(s)	175, 477, 983
BseRI	GAGGAG	1 cut(s)	729
BseSI	GKGCMC	1 cut(s)	175
BseXI	GCAGC	5 cut(s)	170, 277, 280, 344, 535
Bsh1236I	CGCG	3 cut(s)	35, 78, 1020
Bsh1285I	CGRYCG	1 cut(s)	1018
BshFI	GGCC	2 cut(s)	927, 940
BshNI	GGYRCC	2 cut(s)	10, 170
BshVI	ATCGAT	1 cut(s)	325
BsiEI	CGRYCG	1 cut(s)	1018
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	1 cut(s)	795
BslFI	GGGAC	2 cut(s)	838, 980
BslI	CCNNNNNNNGG	2 cut(s)	367, 558
BsmAI	GTCTC	2 cut(s)	518, 1030
BsmFI	GGGAC	2 cut(s)	838, 980
BsnI	GGCC	2 cut(s)	927, 940
Bsp1286I	GDGCHC	2 cut(s)	175, 625
Bsp143I	GATC	8 cut(s)	30, 322, 480, 503, 874, 880, 957, 1015
Bsp1720I	GCTNAGC	1 cut(s)	950
Bsp68I	TCGCGA	1 cut(s)	1020
BspACI	CCGC	4 cut(s)	35, 63, 76, 478
BspANI	GGCC	2 cut(s)	927, 940
BspCNI	CTCAG	3 cut(s)	130, 881, 1016
BspDI	ATCGAT	1 cut(s)	325
BspFNI	CGCG	3 cut(s)	35, 78, 1020
BspLI	GGNNCC	6 cut(s)	12, 52, 172, 768, 841, 968
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	2 cut(s)	488, 511
BspT107I	GGYRCC	2 cut(s)	10, 170
BsrBI	CCGCTC	1 cut(s)	478
BsrDI	GCAATG	2 cut(s)	342, 597
BsrI	ACTGG	3 cut(s)	175, 477, 983
BssECI	CCNNGG	2 cut(s)	215, 639
BssMI	GATC	8 cut(s)	30, 322, 480, 503, 874, 880, 957, 1015
Bst2UI	CCWGG	3 cut(s)	309, 362, 640
Bst4CI	ACNGT	6 cut(s)	73, 85, 103, 409, 819, 829
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	1 cut(s)	654
BstDEI	CTNAG	7 cut(s)	138, 258, 581, 676, 868, 950, 1003
BstDSI	CCRYGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	970
BstFNI	CGCG	3 cut(s)	35, 78, 1020
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	8 cut(s)	33, 325, 483, 506, 877, 883, 960, 1018
BstMAI	GTCTC	2 cut(s)	518, 1030
BstMBI	GATC	8 cut(s)	30, 322, 480, 503, 874, 880, 957, 1015
BstMCI	CGRYCG	1 cut(s)	1018
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 338, 596, 629, 946
BstNI	CCWGG	3 cut(s)	309, 362, 640
BstSCI	CCNGG	3 cut(s)	307, 360, 638
BstSLI	GKGCMC	1 cut(s)	175
BstUI	CGCG	3 cut(s)	35, 78, 1020
BstV1I	GCAGC	5 cut(s)	170, 277, 280, 344, 535
BstV2I	GAAGAC	3 cut(s)	12, 97, 276
BstX2I	RGATCY	2 cut(s)	503, 874
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	2 cut(s)	503, 874
Bsu15I	ATCGAT	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	927, 940
BsuTUI	ATCGAT	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	970
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	5 cut(s)	26, 69, 405, 470, 808
BtuMI	TCGCGA	1 cut(s)	1020
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	1 cut(s)	654
CaiI	CAGNNNCTG	2 cut(s)	782, 827
CfoI	GCGC	1 cut(s)	80
Cfr13I	GGNCC	4 cut(s)	311, 839, 939, 967
ClaI	ATCGAT	1 cut(s)	325
Csp6I	GTAC	2 cut(s)	11, 349
CviAII	CATG	2 cut(s)	46, 287
CviQI	GTAC	2 cut(s)	11, 349
DdeI	CTNAG	7 cut(s)	138, 258, 581, 676, 868, 950, 1003
DpnI	GATC	8 cut(s)	32, 324, 482, 505, 876, 882, 959, 1017
DpnII	GATC	8 cut(s)	30, 322, 480, 503, 874, 880, 957, 1015
EaeI	YGGCCR	1 cut(s)	925
EciI	GGCGGA	1 cut(s)	52
Eco47I	GGWCC	3 cut(s)	311, 839, 967
Eco57I	CTGAAG	4 cut(s)	174, 213, 259, 336
EcoRII	CCWGG	3 cut(s)	307, 360, 638
EcoT22I	ATGCAT	1 cut(s)	754
FaeI	CATG	2 cut(s)	49, 290
FaqI	GGGAC	2 cut(s)	838, 980
FatI	CATG	2 cut(s)	45, 286
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	5 cut(s)	159, 291, 294, 333, 549
FokI	GGATG	1 cut(s)	957
Fsp4HI	GCNGC	5 cut(s)	159, 291, 294, 333, 549
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	5 cut(s)	159, 291, 294, 333, 549
GsuI	CTGGAG	4 cut(s)	494, 726, 759, 966
HaeIII	GGCC	2 cut(s)	927, 940
HapII	CCGG	1 cut(s)	795
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	2 cut(s)	49, 290
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	5 cut(s)	422, 526, 635, 664, 779
HpaII	CCGG	1 cut(s)	795
HphI	GGTGA	1 cut(s)	807
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	278, 531
Hpy188III	TCNNGA	8 cut(s)	128, 191, 314, 743, 776, 878, 961, 1019
Hpy8I	GTNNAC	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	714
HpyCH4III	ACNGT	6 cut(s)	73, 85, 103, 409, 819, 829
HpyCH4V	TGCA	3 cut(s)	405, 752, 758
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 338, 596, 629, 946
HpyF3I	CTNAG	7 cut(s)	138, 258, 581, 676, 868, 950, 1003
Hsp92II	CATG	2 cut(s)	49, 290
HspAI	GCGC	1 cut(s)	78
KpnI	GGTACC	1 cut(s)	14
Kzo9I	GATC	8 cut(s)	30, 322, 480, 503, 874, 880, 957, 1015
LmnI	GCTCC	3 cut(s)	475, 628, 778
Lsp1109I	GCAGC	5 cut(s)	170, 277, 280, 344, 535
LweI	GCATC	3 cut(s)	450, 561, 665
MaeI	CTAG	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	985
MalI	GATC	8 cut(s)	32, 324, 482, 505, 876, 882, 959, 1017
MbiI	CCGCTC	1 cut(s)	478
MboI	GATC	8 cut(s)	30, 322, 480, 503, 874, 880, 957, 1015
MboII	GAAGA	3 cut(s)	12, 97, 281
MflI	RGATCY	2 cut(s)	503, 874
MhlI	GDGCHC	2 cut(s)	175, 625
MlsI	TGGCCA	1 cut(s)	927
MluCI	AATT	4 cut(s)	226, 510, 844, 905
MluNI	TGGCCA	1 cut(s)	927
MlyI	GAGTC	2 cut(s)	520, 658
Mox20I	TGGCCA	1 cut(s)	927
Mph1103I	ATGCAT	1 cut(s)	754
MscI	TGGCCA	1 cut(s)	927
MslI	CAYNNNNRTG	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	927
MspI	CCGG	1 cut(s)	795
MspR9I	CCNGG	3 cut(s)	309, 362, 640
MvaI	CCWGG	3 cut(s)	309, 362, 640
MvnI	CGCG	3 cut(s)	35, 78, 1020
MwoI	GCNNNNNNNGC	5 cut(s)	158, 338, 596, 629, 946
NdeII	GATC	8 cut(s)	30, 322, 480, 503, 874, 880, 957, 1015
NlaIII	CATG	2 cut(s)	49, 290
NlaIV	GGNNCC	6 cut(s)	12, 52, 172, 768, 841, 968
NruI	TCGCGA	1 cut(s)	1020
NsiI	ATGCAT	1 cut(s)	754
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	422, 635, 779
PflMI	CCANNNNNTGG	1 cut(s)	558
PkrI	GCNGC	5 cut(s)	160, 292, 295, 334, 550
Ple19I	CGATCG	1 cut(s)	1018
PleI	GAGTC	2 cut(s)	520, 658
PpsI	GAGTC	2 cut(s)	520, 658
Psp6I	CCWGG	3 cut(s)	307, 360, 638
PspGI	CCWGG	3 cut(s)	307, 360, 638
PspN4I	GGNNCC	6 cut(s)	12, 52, 172, 768, 841, 968
PspPI	GGNCC	4 cut(s)	311, 839, 939, 967
PstNI	CAGNNNCTG	2 cut(s)	782, 827
PsuI	RGATCY	2 cut(s)	503, 874
PvuI	CGATCG	1 cut(s)	1018
RruI	TCGCGA	1 cut(s)	1020
RsaI	GTAC	2 cut(s)	12, 350
RsaNI	GTAC	2 cut(s)	11, 349
RseI	CAYNNNNRTG	1 cut(s)	302
SalI	GTCGAC	1 cut(s)	41
SatI	GCNGC	5 cut(s)	159, 291, 294, 333, 549
Sau3AI	GATC	8 cut(s)	30, 322, 480, 503, 874, 880, 957, 1015
Sau96I	GGNCC	4 cut(s)	311, 839, 939, 967
SchI	GAGTC	2 cut(s)	520, 658
ScrFI	CCNGG	3 cut(s)	309, 362, 640
SduI	GDGCHC	2 cut(s)	175, 625
SetI	ASST	8 cut(s)	42, 146, 259, 357, 433, 547, 772, 956
SfaNI	GCATC	3 cut(s)	450, 561, 665
SinI	GGWCC	3 cut(s)	311, 839, 967
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	4 cut(s)	226, 510, 844, 905
SsiI	CCGC	4 cut(s)	35, 63, 76, 478
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	3 cut(s)	307, 360, 638
TaaI	ACNGT	6 cut(s)	73, 85, 103, 409, 819, 829
TaqI	TCGA	4 cut(s)	42, 224, 325, 718
TaqII	GACCGA	1 cut(s)	1028
TasI	AATT	4 cut(s)	226, 510, 844, 905
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	3 cut(s)	422, 635, 779
TscAI	CASTG	5 cut(s)	33, 76, 412, 477, 808
TseI	GCWGC	5 cut(s)	158, 290, 293, 332, 548
TspRI	CASTG	5 cut(s)	33, 76, 412, 477, 808
Van91I	CCANNNNNTGG	1 cut(s)	558
VpaK11BI	GGWCC	3 cut(s)	311, 839, 967
XapI	RAATTY	2 cut(s)	226, 905
XbaI	TCTAGA	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.